Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Forward (+)

56071459 .. 56071851

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG395500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGTTCTGATCATCATCAAGTGCCCCCAAAGCTTCCAGTCCTAGATTTCTCAAACAAGGAAACTCTGAAGCCTGGCACCAACTCATGGCAATCCGCACGCAAAGATGTTCAACAAGCACTCGAAGAATTTGGCTGCTTTGTAGTTTTGTACGACAGAATCTCTCCGGACTTTTGCAATTCTCTTTTGGCTACTCTGCAAGAGTTGTTTGATCTCCCTACCGAAACTAAAATGACAAACAAATACGAGGCTAAGCCCTTAAATGGGTATGTTGGGCAAATTCCCAAACTCCCTCTCCATGAAAGCATGGGCATCGACAATGCAACTTCTCTGGAGGAAACTCAGAGATTCACAGAGCTCATGTGGCCTGGTGGAAATGATAACTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

130

Amino Acids

14.78

Weight (kDa)

4.82

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	12 - 92	3.1e-11	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	128, 279
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	87, 263, 264
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	2 cut(s)	73, 367
AluBI	AGCT	2 cut(s)	34, 358
AluI	AGCT	2 cut(s)	34, 358
Alw21I	GWGCWC	1 cut(s)	360
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	2 cut(s)	128, 279
BaeGI	GKGCMC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	2 cut(s)	75, 369
BclI	TGATCA	1 cut(s)	10
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	136
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	75, 369
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	75, 369
BmsI	GCATC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 263, 264
Bse1I	ACTGG	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	15
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	75, 369
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	87, 263, 264
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	367
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	87, 263, 264
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	27, 360
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	10, 211
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	1 cut(s)	355
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	2 cut(s)	10, 211
Bst2UI	CCWGG	2 cut(s)	75, 369
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	252, 342
BstKTI	GATC	2 cut(s)	13, 214
BstMBI	GATC	2 cut(s)	10, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 364
BstNI	CCWGG	2 cut(s)	75, 369
BstSCI	CCNGG	2 cut(s)	73, 367
BstSLI	GKGCMC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	4 cut(s)	87, 299, 307, 361
CviJI	RGCY	8 cut(s)	34, 73, 135, 191, 251, 256, 358, 367
CviKI_1	RGCY	8 cut(s)	34, 73, 135, 191, 251, 256, 358, 367
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	252, 342
DpnI	GATC	2 cut(s)	12, 213
DpnII	GATC	2 cut(s)	10, 211
Ecl136II	GAGCTC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	73, 367
EcoT38I	GRGCYC	1 cut(s)	360
FaeI	CATG	4 cut(s)	90, 302, 310, 364
FaiI	YATR	5 cut(s)	88, 270, 300, 308, 362
FatI	CATG	4 cut(s)	86, 298, 306, 360
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	4 cut(s)	90, 302, 310, 364
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	2 cut(s)	159, 348
HpaII	CCGG	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	10, 69, 345
Hpy188III	TCNNGA	2 cut(s)	167, 332
HpyCH4V	TGCA	3 cut(s)	177, 199, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 364
HpyF3I	CTNAG	2 cut(s)	252, 342
Hsp92II	CATG	4 cut(s)	90, 302, 310, 364
Kpn2I	TCCGGA	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 211
LpnPI	CCDG	7 cut(s)	51, 60, 87, 180, 317, 354, 381
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	44
MalI	GATC	2 cut(s)	12, 213
MboI	GATC	2 cut(s)	10, 211
MboII	GAAGA	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	27, 360
MluCI	AATT	3 cut(s)	128, 178, 279
MnlI	CCTC	3 cut(s)	241, 303, 328
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	1 cut(s)	260
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	75, 369
MvaI	CCWGG	2 cut(s)	75, 369
MwoI	GCNNNNNNNGC	2 cut(s)	31, 364
NdeII	GATC	2 cut(s)	10, 211
NlaIII	CATG	4 cut(s)	90, 302, 310, 364
NlaIV	GGNNCC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	159, 348
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	73, 367
PspGI	CCWGG	2 cut(s)	73, 367
PspN4I	GGNNCC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	2 cut(s)	10, 211
ScrFI	CCNGG	2 cut(s)	75, 369
SduI	GDGCHC	2 cut(s)	27, 360
SetI	ASST	2 cut(s)	36, 360
SfaNI	GCATC	1 cut(s)	321
Sse9I	AATT	3 cut(s)	128, 178, 279
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	73, 367
TaqI	TCGA	2 cut(s)	123, 315
TasI	AATT	3 cut(s)	128, 178, 279
TfiI	GAWTC	2 cut(s)	159, 348
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	315
Van91I	CCANNNNNTGG	1 cut(s)	87
XapI	RAATTY	2 cut(s)	128, 279
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.