Rw7G020280

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000805
Physical Location & Seq
Reverse (-)
22875119 .. 22876273
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020280.1

Sequence Viewer

Length: 906 bp
ATGAATCCCCAAACAGTGGCCAAAATACCAGTGGTAGAGTTCTCCAAAGAGGACTGCTTGAAGCCAGGGACAAGCTCTTGGCTCTCGGCAAGCAAAGGTGTTTGCCAAGCACTCGAACAGCTCGGCTGTTTCATTGTAACACTTTCTAGTAACAAAGTTTCTTTGGAGCTTCACAACACAATCTTCAGAACGTTGAACGAGTTGTTTGATCTCCCGATGGCAATCAAAGTGCCAAATACTAACAAAAACGACGGCGCTGGTGGCTACTCGACTTTGCATCCTGCCCATGAAAGCTTTGGGATTGTTAATAGTACGAACCCGGAAGAAACACAGAAGTTCACAAATCGCTTTTGGACTAATGGAAACGATCAGTTTCGTGAGAGTGTTGATTCGTATGCAAAAGTGATGGCAGAACTAGATCGAGCTGTGACAAGAATGGTATTCGAAAACTATGGTGTAGACAAGTACCACGATGATCACGTTCAATCTACTTTCACGAAAACTGGAATTGACGTCGGTCTAGGCAGTCATACAGATAAGACCTTTACCACCATCCTCCATCAAAATAATGTGAATGGTCTAGAGATAAATACGAAGAACGACGAGTGGATACGCTGTGATTATCCTCTTCCTTCATCCTTCCTATTCCTAGCAGGCGATGTATTCCAGGTCTGGAGCAATGACAGAATACGACCTTGTAGACATAGAGTCAGCTTGACTGAGAATCACGTGAGATACTCTTTCGGACTCTATTCGATCAAGGAAGGAGTGACAAACATACCGGACGAGCTTGTGGACGAGGACCATCCCCTACGGTTTAAGCCATTGAATCATATAGAATATGCTAGAGCAAGATATGACAGCCATGGGACTGACTTGGGCGTCAAGTCATATTGTGGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

301

Amino Acids

34.04

Weight (kDa)

5.83

Isoelectric Point (pI)

22.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 9 - 96 1.4e-06 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 157 - 248 1.5e-17 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 881
AatII GACGTC 1 cut(s) 516
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 2 cut(s) 459, 700
AclI AACGTT 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 169
AcvI CACGTG 1 cut(s) 730
AcyI GRCGYC 2 cut(s) 513, 882
AfaI GTAC 2 cut(s) 313, 467
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 4 cut(s) 61, 196, 485, 829
AhdI GACNNNNNGTC 1 cut(s) 707
AjnI CCWGG 2 cut(s) 64, 666
AluBI AGCT 7 cut(s) 75, 121, 169, 294, 425, 714, 790
AluI AGCT 7 cut(s) 75, 121, 169, 294, 425, 714, 790
AoxI GGCC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 802
AsuC2I CCSGG 1 cut(s) 320
AsuII TTCGAA 1 cut(s) 444
AvaII GGWCC 1 cut(s) 802
BalI TGGCCA 1 cut(s) 20
BbrPI CACGTG 1 cut(s) 730
BccI CCATC 5 cut(s) 211, 400, 560, 567, 813
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 2 cut(s) 66, 668
BciVI GTATCC 1 cut(s) 603
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 320
BfaI CTAG 6 cut(s) 147, 416, 521, 581, 650, 846
BfoI RGCGCY 1 cut(s) 258
BfuI GTATCC 1 cut(s) 603
Bme1390I CCNGG 3 cut(s) 66, 320, 668
Bme18I GGWCC 1 cut(s) 802
BmeRI GACNNNNNGTC 1 cut(s) 707
BmgT120I GGNCC 1 cut(s) 802
BmrFI CCNGG 3 cut(s) 66, 320, 668
BmsI GCATC 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 694
Bpu14I TTCGAA 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 730
BsaBI GATNNNNATC 1 cut(s) 221
BsaHI GRCGYC 2 cut(s) 513, 882
BsaJI CCNNGG 2 cut(s) 65, 865
BsaWI WCCGGW 1 cut(s) 781
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 29, 508
Bse3DI GCAATG 1 cut(s) 685
Bse8I GATNNNNATC 1 cut(s) 221
BseBI CCWGG 2 cut(s) 66, 668
BseDI CCNNGG 2 cut(s) 65, 865
BseGI GGATG 4 cut(s) 277, 552, 635, 805
BseJI GATNNNNATC 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 2 cut(s) 29, 508
BshFI GGCC 1 cut(s) 20
BsiSI CCGG 2 cut(s) 320, 782
BslFI GGGAC 2 cut(s) 82, 883
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 82, 883
BsnI GGCC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 444
Bsp143I GATC 5 cut(s) 208, 367, 418, 475, 756
Bsp19I CCATGG 1 cut(s) 865
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 712
BspT104I TTCGAA 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 685
BsrI ACTGG 2 cut(s) 29, 508
BssECI CCNNGG 2 cut(s) 65, 865
BssMI GATC 5 cut(s) 208, 367, 418, 475, 756
BssNI GRCGYC 2 cut(s) 513, 882
BssT1I CCWWGG 1 cut(s) 865
Bst2UI CCWGG 2 cut(s) 66, 668
Bst4CI ACNGT 2 cut(s) 16, 816
Bst6I CTCTTC 1 cut(s) 633
BstACI GRCGYC 2 cut(s) 513, 882
BstBAI YACGTR 1 cut(s) 730
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 91, 655
BstDEI CTNAG 1 cut(s) 720
BstDSI CCRYGG 1 cut(s) 865
BstF5I GGATG 4 cut(s) 277, 552, 635, 805
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 5 cut(s) 211, 370, 421, 478, 759
BstMBI GATC 5 cut(s) 208, 367, 418, 475, 756
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstNI CCWGG 2 cut(s) 66, 668
BstPAI GACNNNNGTC 1 cut(s) 516
BstSCI CCNGG 3 cut(s) 64, 318, 666
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 865
BtgZI GCGATG 1 cut(s) 672
BtsCI GGATG 4 cut(s) 277, 552, 635, 805
BtsIMutI CAGTG 2 cut(s) 21, 36
Cac8I GCNNGC 2 cut(s) 91, 655
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 802
CseI GACGC 1 cut(s) 871
Csp6I GTAC 2 cut(s) 312, 466
CviAII CATG 2 cut(s) 287, 866
CviQI GTAC 2 cut(s) 312, 466
DdeI CTNAG 1 cut(s) 720
DpnI GATC 5 cut(s) 210, 369, 420, 477, 758
DpnII GATC 5 cut(s) 208, 367, 418, 475, 756
DrdI GACNNNNNNGTC 1 cut(s) 881
DriI GACNNNNNGTC 1 cut(s) 707
DseDI GACNNNNNNGTC 1 cut(s) 881
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 633
Eam1105I GACNNNNNGTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 865
Eco47I GGWCC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 169
Eco72I CACGTG 1 cut(s) 730
EcoRII CCWGG 2 cut(s) 64, 666
EcoT14I CCWWGG 1 cut(s) 865
ErhI CCWWGG 1 cut(s) 865
FaeI CATG 2 cut(s) 290, 869
FaqI GGGAC 2 cut(s) 82, 883
FatI CATG 2 cut(s) 286, 865
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 2 cut(s) 459, 700
FokI GGATG 4 cut(s) 264, 539, 622, 792
FspBI CTAG 6 cut(s) 147, 416, 521, 581, 650, 846
GlaI GCGC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 694
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 320, 782
HgaI GACGC 1 cut(s) 871
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 2 cut(s) 513, 882
Hin1II CATG 2 cut(s) 290, 869
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 6 cut(s) 4, 389, 708, 724, 747, 829
HpaII CCGG 2 cut(s) 320, 782
Hpy166II GTNNAC 4 cut(s) 339, 460, 701, 796
Hpy188I TCNGA 2 cut(s) 188, 746
Hpy188III TCNNGA 5 cut(s) 214, 377, 496, 581, 673
Hpy8I GTNNAC 4 cut(s) 339, 460, 701, 796
Hpy99I CGWCG 3 cut(s) 254, 518, 605
HpyAV CCTTC 3 cut(s) 642, 649, 758
HpyCH4III ACNGT 2 cut(s) 16, 816
HpyCH4IV ACGT 4 cut(s) 191, 480, 513, 729
HpyCH4V TGCA 2 cut(s) 277, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
HpyF3I CTNAG 1 cut(s) 720
HpySE526I ACGT 4 cut(s) 191, 480, 513, 729
Hsp92I GRCGYC 2 cut(s) 513, 882
Hsp92II CATG 2 cut(s) 290, 869
HspAI GCGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 5 cut(s) 208, 367, 418, 475, 756
LmnI GCTCC 2 cut(s) 166, 675
LweI GCATC 1 cut(s) 286
MaeI CTAG 6 cut(s) 147, 416, 521, 581, 650, 846
MaeII ACGT 4 cut(s) 191, 480, 513, 729
MaeIII GTNAC 4 cut(s) 136, 149, 427, 769
MalI GATC 5 cut(s) 210, 369, 420, 477, 758
MboI GATC 5 cut(s) 208, 367, 418, 475, 756
MboII GAAGA 4 cut(s) 175, 335, 607, 620
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 507
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 2 cut(s) 717, 741
MnlI CCTC 4 cut(s) 43, 566, 636, 793
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 2 cut(s) 306, 819
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 2 cut(s) 320, 782
MspR9I CCNGG 3 cut(s) 66, 320, 668
MvaI CCWGG 2 cut(s) 66, 668
MwoI GCNNNNNNNGC 1 cut(s) 261
NciI CCSGG 1 cut(s) 320
NcoI CCATGG 1 cut(s) 865
NdeII GATC 5 cut(s) 208, 367, 418, 475, 756
NlaIII CATG 2 cut(s) 290, 869
NmeAIII GCCGAG 2 cut(s) 65, 102
NmuCI GTSAC 2 cut(s) 427, 769
NspV TTCGAA 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PfeI GAWTC 4 cut(s) 4, 389, 724, 829
PflMI CCANNNNNTGG 1 cut(s) 16
PleI GAGTC 2 cut(s) 716, 741
PmaCI CACGTG 1 cut(s) 730
PmlI CACGTG 1 cut(s) 730
PpsI GAGTC 2 cut(s) 716, 741
Ppu21I YACGTR 1 cut(s) 730
PshAI GACNNNNGTC 1 cut(s) 516
Psp1406I AACGTT 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 64, 666
PspCI CACGTG 1 cut(s) 730
PspGI CCWGG 2 cut(s) 64, 666
PspPI GGNCC 1 cut(s) 802
RsaI GTAC 2 cut(s) 313, 467
RsaNI GTAC 2 cut(s) 312, 466
SaqAI TTAA 2 cut(s) 306, 819
Sau3AI GATC 5 cut(s) 208, 367, 418, 475, 756
Sau96I GGNCC 1 cut(s) 802
SchI GAGTC 2 cut(s) 717, 741
ScrFI CCNGG 3 cut(s) 66, 320, 668
SfaNI GCATC 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 1 cut(s) 802
Sse9I AATT 1 cut(s) 507
SspMI CTAG 6 cut(s) 147, 416, 521, 581, 650, 846
StyD4I CCNGG 3 cut(s) 64, 318, 666
StyI CCWWGG 1 cut(s) 865
TaaI ACNGT 2 cut(s) 16, 816
TaiI ACGT 4 cut(s) 194, 483, 516, 732
TaqI TCGA 5 cut(s) 114, 269, 421, 444, 755
TaqII GACCGA 1 cut(s) 506
TasI AATT 1 cut(s) 507
TfiI GAWTC 4 cut(s) 4, 389, 724, 829
Tru1I TTAA 2 cut(s) 306, 819
Tru9I TTAA 2 cut(s) 306, 819
TscAI CASTG 2 cut(s) 21, 36
TseFI GTSAC 2 cut(s) 427, 769
Tsp45I GTSAC 2 cut(s) 427, 769
TspDTI ATGAA 4 cut(s) 17, 121, 303, 624
TspRI CASTG 2 cut(s) 21, 36
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 802
XbaI TCTAGA 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 293
XmiI GTMKAC 2 cut(s) 459, 700
XspI CTAG 6 cut(s) 147, 416, 521, 581, 650, 846
ZraI GACGTC 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.