pycom06g07340

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
11912717 .. 11913124
408 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07340.1

Sequence Viewer

Length: 408 bp
ATGTTTCAAAAAGAATCTGAAATACATCAGCCTAGCTATATATTCAGCTTGCAGTTCAATAGTCTTAGAGCCCTAGCCTCGAACTCAAGGGAAAAGATGAGCCTTACAATAGCAGCAGTGGCCAAGATTCCGGTAGTCGATTTCTCCGAAGCCGACTGCTGGAAGCCAGGGACAAGTTCTTGGCTCTCGTTACGCAAAGATGTTTGCCATGCACTCGAAGAGTGTGGCTGTTTCGTGATGGTCCTGCCAAACAAATTTACGCCGGAGCTTCAAGACAGAATATTTGGCACATTGGAGGAGTTGTTTGATTTCGCCATTGAAATTAAAGCTCAAGTTCCTCAGGAACAACCTGTTTGGTGGTTTACACAAGTGGCAATATTGGCCATGAAAGCTTGGAAACTGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.49

Weight (kDa)

5.37

Isoelectric Point (pI)

62.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 120, 381
AcsI RAATTY 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 4 cut(s) 8, 58, 272, 320
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 5 cut(s) 36, 48, 268, 329, 392
AluI AGCT 5 cut(s) 36, 48, 268, 329, 392
AoxI GGCC 2 cut(s) 120, 381
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 254
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspS9I GGNCC 1 cut(s) 241
AvaII GGWCC 1 cut(s) 241
AxyI CCTNAGG 1 cut(s) 339
BalI TGGCCA 2 cut(s) 122, 383
BanII GRGCYC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 168
BfaI CTAG 2 cut(s) 33, 74
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 70, 315
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 2 cut(s) 122, 383
BsiSI CCGG 2 cut(s) 131, 263
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 2 cut(s) 122, 383
Bsp1286I GDGCHC 1 cut(s) 73
BspANI GGCC 2 cut(s) 122, 383
BspCNI CTCAG 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 65, 339
BstMWI GCNNNNNNNGC 3 cut(s) 119, 380, 389
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 125
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 2 cut(s) 122, 383
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 241
CviAII CATG 2 cut(s) 209, 385
DdeI CTNAG 2 cut(s) 65, 339
EaeI YGGCCR 2 cut(s) 120, 381
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 241
Eco81I CCTNAGG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 2 cut(s) 212, 388
FaiI YATR 5 cut(s) 39, 41, 210, 386, 406
FaqI GGGAC 1 cut(s) 184
FatI CATG 2 cut(s) 208, 384
Fnu4HI GCNGC 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 33, 74
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 122, 383
HapII CCGG 2 cut(s) 131, 263
Hin1II CATG 2 cut(s) 212, 388
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 2 cut(s) 14, 127
HpaII CCGG 2 cut(s) 131, 263
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 2 cut(s) 19, 148
Hpy188III TCNNGA 3 cut(s) 235, 272, 341
Hpy8I GTNNAC 1 cut(s) 363
HpyCH4V TGCA 2 cut(s) 52, 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 380, 389
HpyF3I CTNAG 2 cut(s) 65, 339
Hsp92II CATG 2 cut(s) 212, 388
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 8 cut(s) 144, 145, 153, 180, 257, 276, 326, 363
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 2 cut(s) 33, 74
MaeIII GTNAC 1 cut(s) 189
MboII GAAGA 1 cut(s) 230
MhlI GDGCHC 1 cut(s) 73
MlsI TGGCCA 2 cut(s) 122, 383
MluCI AATT 2 cut(s) 254, 321
MluNI TGGCCA 2 cut(s) 122, 383
MnlI CCTC 3 cut(s) 88, 289, 348
Mox20I TGGCCA 2 cut(s) 122, 383
MscI TGGCCA 2 cut(s) 122, 383
MseI TTAA 1 cut(s) 324
Msp20I TGGCCA 2 cut(s) 122, 383
MspI CCGG 2 cut(s) 131, 263
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 119, 380, 389
NlaIII CATG 2 cut(s) 212, 388
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 2 cut(s) 14, 127
PkrI GCNGC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 73
SetI ASST 6 cut(s) 38, 50, 270, 331, 352, 394
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 2 cut(s) 85, 330
SmoI CTYRAG 2 cut(s) 85, 330
Sse9I AATT 2 cut(s) 254, 321
SspI AATATT 2 cut(s) 282, 378
SspMI CTAG 2 cut(s) 33, 74
StyD4I CCNGG 1 cut(s) 166
TaqI TCGA 3 cut(s) 80, 138, 216
TasI AATT 2 cut(s) 254, 321
TfiI GAWTC 2 cut(s) 14, 127
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 401
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 254
XspI CTAG 2 cut(s) 33, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.