RLG00000015660

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000805
Physical Location & Seq
Forward (+)
474129 .. 475479
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015660

Sequence Viewer

Length: 936 bp
ATGGGTAGTATTACTAACACAGAGGCCAAGATTCCAGTCATAGATTTCTCCGGCGACGACTTAAAGCGCGGAACAAGTTCATGGATCGAAGCCTGCAACAAAGTCTGCAGCGCACTAGAAGACTATGGCTGCTTTGTAGCAACACTGTCCGATGCAGACTGTTTAGAGCTTCACAACACCATCTTTGGTAGCTTGGACGACTTGTTTGGTTTCGCCAAAGAGATCAAGCTCCACAACACTTATGAGAAGCCTTTCCGTGGTTACCATTCACCTAACTCTGTTCATGAAGGCTTGGGGATCGATGATCCTACAAACCCTGAGGCTACTCATAAGTTCACCAAACTCTTCTGGCCCCATGGAAATCATCATTTCTGTGAGACTGCAAATTTATATGCCAAGCTGGTGACGGGGCTAGACCAGACTGTGACAAGAATGATATTTGAGCACTATGGGGTGGAGAAGTACTGTGAGTCTCATATTGGATCAACTGATTATGTTCTTAGACTCCACAAATACAATGCAGCAGACAAGGAGAAAACTCACAAGGCTCTTCCGGAGCACACAGACTTGAACCTCACTACCATCATTCATCAAAACCACGTGAATGGCTTGGAGGTCAAGACAAAGCATGGTGATCAATGGATTGGCTTTGATGCCTCCCCTAACTCTTTTATATTCATGACTGGGGACGGGTTTCAGGTATGGAGCAATGACAGAATTCAACCTTGTCTGCATAGAGTGACAATGAGCGAAAATGCAGTGAGATACTCGGTTCTACTCTCTACATTCCACAATGGGATCATAACTGTGCCCGAGGAGTTGATCGATGATGAACACCCTTTGAAATATAAGCCACTGAATCATCTTGAATACCTTGCTTCACAACTTGCTCTAACTACCAGCAGGGTTTGTGTTAAGAATTTCTGTGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

312

Amino Acids

35.13

Weight (kDa)

5.81

Isoelectric Point (pI)

26.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 164 - 258 1.1e-17 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 69
AccIII TCCGGA 1 cut(s) 553
AciI CCGC 1 cut(s) 69
AclWI GGATC 5 cut(s) 92, 299, 305, 490, 806
AcsI RAATTY 3 cut(s) 385, 717, 919
AcvI CACGTG 1 cut(s) 601
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 571, 722, 844, 869
AluBI AGCT 4 cut(s) 169, 192, 229, 400
AluI AGCT 4 cut(s) 169, 192, 229, 400
Alw21I GWGCWC 2 cut(s) 447, 561
Alw26I GTCTC 2 cut(s) 371, 477
AlwI GGATC 5 cut(s) 92, 299, 305, 490, 806
Ama87I CYCGRG 1 cut(s) 812
Aor13HI TCCGGA 1 cut(s) 553
AoxI GGCC 2 cut(s) 24, 350
ApeKI GCWGC 3 cut(s) 108, 129, 521
ApoI RAATTY 3 cut(s) 385, 717, 919
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 2 cut(s) 76, 251
AspLEI GCGC 2 cut(s) 69, 113
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 4 cut(s) 261, 328, 415, 644
AvaI CYCGRG 1 cut(s) 812
AxyI CCTNAGG 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 813
BbrPI CACGTG 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 447, 561
BbvI GCAGC 3 cut(s) 116, 120, 533
BccI CCATC 2 cut(s) 188, 590
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 2 cut(s) 371, 477
BfaI CTAG 2 cut(s) 116, 413
BfmI CTRYAG 1 cut(s) 106
BisI GCNGC 3 cut(s) 109, 130, 522
BlsI GCNGC 3 cut(s) 110, 131, 523
BmcAI AGTACT 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 693
BmsI GCATC 2 cut(s) 142, 643
BmuI ACTGGG 1 cut(s) 693
BpiI GAAGAC 1 cut(s) 126
Bsa29I ATCGAT 2 cut(s) 300, 825
BsaAI YACGTR 1 cut(s) 601
BsaJI CCNNGG 3 cut(s) 256, 355, 813
BsaWI WCCGGW 1 cut(s) 553
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 35, 688
Bse21I CCTNAGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 715
BseAI TCCGGA 1 cut(s) 553
BseCI ATCGAT 2 cut(s) 300, 825
BseDI CCNNGG 3 cut(s) 256, 355, 813
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 35, 688
BseRI GAGGAG 1 cut(s) 830
BseSI GKGCMC 1 cut(s) 813
BseXI GCAGC 3 cut(s) 116, 120, 533
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 2 cut(s) 26, 352
BshVI ATCGAT 2 cut(s) 300, 825
BsiHKAI GWGCWC 2 cut(s) 447, 561
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 2 cut(s) 51, 554
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 371, 477
BsmFI GGGAC 1 cut(s) 701
BsnI GGCC 2 cut(s) 26, 352
BsoBI CYCGRG 1 cut(s) 812
Bsp1286I GDGCHC 3 cut(s) 447, 561, 813
Bsp13I TCCGGA 1 cut(s) 553
Bsp143I GATC 8 cut(s) 84, 222, 297, 304, 482, 634, 798, 822
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 26, 352
BspCNI CTCAG 1 cut(s) 310
BspDI ATCGAT 2 cut(s) 300, 825
BspEI TCCGGA 1 cut(s) 553
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 2 cut(s) 283, 678
BspLI GGNNCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 110
BspPI GGATC 5 cut(s) 92, 299, 305, 490, 806
BspQI GCTCTTC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 715
BsrI ACTGG 2 cut(s) 35, 688
BssECI CCNNGG 3 cut(s) 256, 355, 813
BssMI GATC 8 cut(s) 84, 222, 297, 304, 482, 634, 798, 822
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 5 cut(s) 147, 161, 424, 467, 808
Bst6I CTCTTC 2 cut(s) 350, 555
BstBAI YACGTR 1 cut(s) 601
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 318, 500
BstDSI CCRYGG 2 cut(s) 256, 355
BstEII GGTNACC 1 cut(s) 260
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 2 cut(s) 69, 113
BstKTI GATC 8 cut(s) 87, 225, 300, 307, 485, 637, 801, 825
BstMAI GTCTC 2 cut(s) 371, 477
BstMBI GATC 8 cut(s) 84, 222, 297, 304, 482, 634, 798, 822
BstPI GGTNACC 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 813
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 116, 120, 533
BstV2I GAAGAC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 605
Bsu15I ATCGAT 2 cut(s) 300, 825
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 26, 352
BsuTUI ATCGAT 2 cut(s) 300, 825
BtgI CCRYGG 2 cut(s) 256, 355
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 3 cut(s) 143, 765, 854
Cac8I GCNNGC 1 cut(s) 94
CciI TCATGA 2 cut(s) 283, 678
CfoI GCGC 2 cut(s) 69, 113
Cfr13I GGNCC 1 cut(s) 351
ClaI ATCGAT 2 cut(s) 300, 825
Csp6I GTAC 1 cut(s) 463
CviAII CATG 5 cut(s) 81, 284, 356, 629, 679
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 318, 500
DpnI GATC 8 cut(s) 86, 224, 299, 306, 484, 636, 800, 824
DpnII GATC 8 cut(s) 84, 222, 297, 304, 482, 634, 798, 822
Eam1104I CTCTTC 2 cut(s) 350, 555
EarI CTCTTC 2 cut(s) 350, 555
Eco130I CCWWGG 1 cut(s) 355
Eco72I CACGTG 1 cut(s) 601
Eco81I CCTNAGG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 812
Eco91I GGTNACC 1 cut(s) 260
EcoO65I GGTNACC 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 717
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 5 cut(s) 84, 287, 359, 632, 682
FaqI GGGAC 1 cut(s) 701
FatI CATG 5 cut(s) 80, 283, 355, 628, 678
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 3 cut(s) 109, 130, 522
Fsp4HI GCNGC 3 cut(s) 109, 130, 522
FspBI CTAG 2 cut(s) 116, 413
GlaI GCGC 2 cut(s) 68, 112
GluI GCNGC 3 cut(s) 109, 130, 522
HaeIII GGCC 2 cut(s) 26, 352
HapII CCGG 2 cut(s) 51, 554
HhaI GCGC 2 cut(s) 69, 113
Hin1II CATG 5 cut(s) 84, 287, 359, 632, 682
Hin6I GCGC 2 cut(s) 67, 111
HinP1I GCGC 2 cut(s) 67, 111
HinfI GANTC 4 cut(s) 31, 470, 504, 859
HpaII CCGG 2 cut(s) 51, 554
HphI GGTGA 4 cut(s) 261, 328, 415, 644
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 5 cut(s) 284, 554, 619, 679, 866
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 5 cut(s) 147, 161, 424, 467, 808
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 7 cut(s) 96, 108, 155, 383, 521, 733, 758
HpyF3I CTNAG 2 cut(s) 318, 500
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 5 cut(s) 84, 287, 359, 632, 682
HspAI GCGC 2 cut(s) 67, 111
Kpn2I TCCGGA 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 8 cut(s) 84, 222, 297, 304, 482, 634, 798, 822
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 3 cut(s) 234, 556, 705
Lsp1109I GCAGC 3 cut(s) 116, 120, 533
LweI GCATC 2 cut(s) 142, 643
MaeI CTAG 2 cut(s) 116, 413
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 4 cut(s) 260, 403, 424, 739
MalI GATC 8 cut(s) 86, 224, 299, 306, 484, 636, 800, 824
MboI GATC 8 cut(s) 84, 222, 297, 304, 482, 634, 798, 822
MboII GAAGA 3 cut(s) 131, 337, 542
MhlI GDGCHC 3 cut(s) 447, 561, 813
MluCI AATT 3 cut(s) 385, 717, 919
MlyI GAGTC 2 cut(s) 479, 498
MnlI CCTC 6 cut(s) 16, 313, 584, 607, 667, 808
MroI TCCGGA 1 cut(s) 553
MroXI GAANNNNTTC 2 cut(s) 76, 251
MseI TTAA 2 cut(s) 62, 915
MslI CAYNNNNRTG 3 cut(s) 372, 603, 806
MspI CCGG 2 cut(s) 51, 554
MvnI CGCG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 355
NdeII GATC 8 cut(s) 84, 222, 297, 304, 482, 634, 798, 822
NlaIII CATG 5 cut(s) 84, 287, 359, 632, 682
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 3 cut(s) 403, 424, 739
PagI TCATGA 2 cut(s) 283, 678
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 2 cut(s) 76, 251
PfeI GAWTC 2 cut(s) 31, 859
PkrI GCNGC 3 cut(s) 110, 131, 523
PleI GAGTC 2 cut(s) 478, 498
PmaCI CACGTG 1 cut(s) 601
PmlI CACGTG 1 cut(s) 601
PpsI GAGTC 2 cut(s) 478, 498
Ppu21I YACGTR 1 cut(s) 601
PspCI CACGTG 1 cut(s) 601
PspEI GGTNACC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 351
PstI CTGCAG 1 cut(s) 110
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 3 cut(s) 372, 603, 806
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 62, 915
SatI GCNGC 3 cut(s) 109, 130, 522
Sau3AI GATC 8 cut(s) 84, 222, 297, 304, 482, 634, 798, 822
Sau96I GGNCC 1 cut(s) 351
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 2 cut(s) 479, 498
SduI GDGCHC 3 cut(s) 447, 561, 813
SfaNI GCATC 2 cut(s) 142, 643
SfcI CTRYAG 1 cut(s) 106
SmiMI CAYNNNNRTG 3 cut(s) 372, 603, 806
Sse9I AATT 3 cut(s) 385, 717, 919
SsiI CCGC 1 cut(s) 69
SspMI CTAG 2 cut(s) 116, 413
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 5 cut(s) 147, 161, 424, 467, 808
TaiI ACGT 1 cut(s) 603
TaqI TCGA 3 cut(s) 87, 300, 825
TasI AATT 3 cut(s) 385, 717, 919
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 2 cut(s) 31, 859
Tru1I TTAA 2 cut(s) 62, 915
Tru9I TTAA 2 cut(s) 62, 915
TscAI CASTG 3 cut(s) 150, 765, 861
TseFI GTSAC 3 cut(s) 403, 424, 739
TseI GCWGC 3 cut(s) 108, 129, 521
Tsp45I GTSAC 3 cut(s) 403, 424, 739
TspDTI ATGAA 6 cut(s) 69, 272, 300, 578, 667, 846
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 3 cut(s) 150, 765, 861
XapI RAATTY 3 cut(s) 385, 717, 919
XmnI GAANNNNTTC 2 cut(s) 76, 251
XspI CTAG 2 cut(s) 116, 413
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.