Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Reverse (-)

4809631 .. 4811372

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACTTCATATTCGCAAACTGTGGCCGGCATTCCAGTGGTAGATTTCTCAAACGCGGACTGCTTGAAGCCGGGGACAAGCTCTTGGCTCTCAGCACGGAAAGACGTTTGCCGGGCACTCGAAGAGCTCGGCTGTTTCATGGCAATCCTACCCAGCAAAGTTCCTCCGGAACTTCAAAAAACCTTCTTTGATGCATTTGGCGAGTTGTTTAATTTCCCCGTCGATACTCCTGAGAAGCCTTTCCGTGCTGGCTACATAACTTCAAGTTCTAGGCAGAAAGGCCTTGGAATTGTTAATGGCACAAACCCTAAAGAAACTCAGGAATTCACACATCATTTTTGGCCAGATGGAAACGACCAATTTCGTGAGAGTGCTGACTTGTATGCAAGAGTGATGGCAGAAATAGATCATGCTGTGACAAGAATGGTATTTGAGAACTATGGTGTAGAGAAGTACCATGACGATCATTTTCAGTCGACTTCGCACACTCTCCGATTTTTAAAATACGAAGAACCCAAGAAATTTGAAGTTGATGTGGGTTTACGCAGTCATACGGACAAGAACTTTTCCACCATACTCCATCAAAATCATGTCAATGGTCTGGAGATCAATACAAAGAATGATGAGTGGGTAGTTTTTGATCCTCTGCCTTCATCCGTGATATTCATAGCAGGTGATGGATTTCAGGTTTGGAGCAACGATCGAATTCGACCATGTAGGCATAGAGTGATACTGAGAGAAAATGAGGCGAGATACTCGTCCGAACTACTTTCAGTTAATAAAGGGATGATACGAGTACCAGATGAGCTCGTGGACAAGGAGCACCCCTTACGGTATAAGCCTTTGAATCATCTAGAATTTCTTATGGCATATAAAGACGTCGGTGAAACTGAGTATGCTGCACATGCATATTGTGCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

35.2

Weight (kDa)

5.72

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	662
AatII	GACGTC	1 cut(s)	882
Acc36I	ACCTGC	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	476
AccII	CGCG	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	2 cut(s)	24, 341
AcsI	RAATTY	4 cut(s)	323, 521, 705, 857
AcyI	GRCGYC	1 cut(s)	879
AfaI	GTAC	2 cut(s)	455, 798
AgsI	TTSAA	5 cut(s)	67, 176, 264, 527, 847
AluBI	AGCT	3 cut(s)	81, 127, 808
AluI	AGCT	3 cut(s)	81, 127, 808
Alw21I	GWGCWC	3 cut(s)	129, 810, 825
AlwI	GGATC	1 cut(s)	635
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	3 cut(s)	24, 280, 341
ApeKI	GCWGC	1 cut(s)	899
ApoI	RAATTY	4 cut(s)	323, 521, 705, 857
ArsI	GACNNNNNNTTYG	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	239
AsuC2I	CCSGG	2 cut(s)	72, 113
AsuHPI	GGTGA	2 cut(s)	686, 896
BaeGI	GKGCMC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	343
BanII	GRGCYC	2 cut(s)	129, 810
BauI	CACGAG	1 cut(s)	809
Bbv12I	GWGCWC	3 cut(s)	129, 810, 825
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	4 cut(s)	341, 388, 588, 671
BcnI	CCSGG	2 cut(s)	72, 113
BfaI	CTAG	2 cut(s)	270, 854
BfuAI	ACCTGC	1 cut(s)	662
BisI	GCNGC	1 cut(s)	900
BlsI	GCNGC	1 cut(s)	901
Bme1390I	CCNGG	2 cut(s)	72, 113
BmrFI	CCNGG	2 cut(s)	72, 113
BmsI	GCATC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	623
BpuMI	CCSGG	2 cut(s)	72, 113
BsaHI	GRCGYC	1 cut(s)	879
BsaJI	CCNNGG	2 cut(s)	71, 283
BsaWI	WCCGGW	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	71, 283
BseGI	GGATG	2 cut(s)	653, 792
BseMII	CTCAG	5 cut(s)	105, 222, 332, 725, 882
BseNI	ACTGG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	886
BseYI	CCCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	885
Bsh1236I	CGCG	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	703
BshFI	GGCC	3 cut(s)	26, 282, 343
BsiEI	CGRYCG	1 cut(s)	703
BsiHKAI	GWGCWC	3 cut(s)	129, 810, 825
BsiSI	CCGG	4 cut(s)	27, 71, 112, 167
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	26, 282, 343
Bsp1286I	GDGCHC	4 cut(s)	118, 129, 810, 825
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	5 cut(s)	406, 463, 606, 640, 700
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	3 cut(s)	26, 282, 343
BspCNI	CTCAG	5 cut(s)	104, 223, 331, 726, 883
BspEI	TCCGGA	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	56
BspMI	ACCTGC	1 cut(s)	662
BspPI	GGATC	1 cut(s)	635
BspQI	GCTCTTC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	71, 283
BssMI	GATC	5 cut(s)	406, 463, 606, 640, 700
BssNI	GRCGYC	1 cut(s)	879
BssSI	CACGAG	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	809
Bst4CI	ACNGT	2 cut(s)	22, 834
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	879
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	2 cut(s)	28, 250
BstDEI	CTNAG	5 cut(s)	91, 231, 318, 734, 891
BstF5I	GGATG	2 cut(s)	653, 792
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	5 cut(s)	409, 466, 609, 643, 703
BstMBI	GATC	5 cut(s)	406, 463, 606, 640, 700
BstMCI	CGRYCG	1 cut(s)	703
BstMWI	GCNNNNNNNGC	2 cut(s)	905, 914
BstNSI	RCATGY	1 cut(s)	908
BstSCI	CCNGG	2 cut(s)	70, 111
BstSLI	GKGCMC	1 cut(s)	118
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	886
BsuRI	GGCC	3 cut(s)	26, 282, 343
BtsCI	GGATG	2 cut(s)	653, 792
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	2 cut(s)	28, 250
Cfr10I	RCCGGY	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	454, 797
CviAII	CATG	6 cut(s)	139, 410, 458, 590, 714, 905
CviQI	GTAC	2 cut(s)	454, 797
DdeI	CTNAG	5 cut(s)	91, 231, 318, 734, 891
DpnI	GATC	5 cut(s)	408, 465, 608, 642, 702
DpnII	GATC	5 cut(s)	406, 463, 606, 640, 700
DraI	TTTAAA	1 cut(s)	501
EaeI	YGGCCR	2 cut(s)	24, 341
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	2 cut(s)	127, 808
Eco130I	CCWWGG	1 cut(s)	283
Eco147I	AGGCCT	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	129, 810
Eco53kI	GAGCTC	2 cut(s)	127, 808
EcoICRI	GAGCTC	2 cut(s)	127, 808
EcoRI	GAATTC	2 cut(s)	323, 705
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	2 cut(s)	196, 910
EcoT38I	GRGCYC	2 cut(s)	129, 810
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	6 cut(s)	142, 413, 461, 593, 717, 908
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	6 cut(s)	138, 409, 457, 589, 713, 904
FblI	GTMKAC	1 cut(s)	476
Fnu4HI	GCNGC	1 cut(s)	900
FokI	GGATG	2 cut(s)	640, 799
FriOI	GRGCYC	2 cut(s)	129, 810
Fsp4HI	GCNGC	1 cut(s)	900
FspBI	CTAG	2 cut(s)	270, 854
GluI	GCNGC	1 cut(s)	900
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	3 cut(s)	26, 282, 343
HapII	CCGG	4 cut(s)	27, 71, 112, 167
Hin1I	GRCGYC	1 cut(s)	879
Hin1II	CATG	6 cut(s)	142, 413, 461, 593, 717, 908
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	1 cut(s)	847
HpaII	CCGG	4 cut(s)	27, 71, 112, 167
HphI	GGTGA	2 cut(s)	686, 896
Hpy166II	GTNNAC	3 cut(s)	477, 542, 814
Hpy188I	TCNGA	2 cut(s)	494, 763
Hpy188III	TCNNGA	6 cut(s)	167, 230, 320, 365, 602, 854
Hpy8I	GTNNAC	3 cut(s)	477, 542, 814
Hpy99I	CGWCG	2 cut(s)	224, 884
HpyAV	CCTTC	2 cut(s)	193, 660
HpyCH4III	ACNGT	2 cut(s)	22, 834
HpyCH4IV	ACGT	2 cut(s)	105, 879
HpyCH4V	TGCA	4 cut(s)	194, 386, 902, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	905, 914
HpyF3I	CTNAG	5 cut(s)	91, 231, 318, 734, 891
HpySE526I	ACGT	2 cut(s)	105, 879
Hsp92I	GRCGYC	1 cut(s)	879
Hsp92II	CATG	6 cut(s)	142, 413, 461, 593, 717, 908
Kpn2I	TCCGGA	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	406, 463, 606, 640, 700
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	693, 820
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	270, 854
MaeII	ACGT	2 cut(s)	105, 879
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	5 cut(s)	408, 465, 608, 642, 702
MboI	GATC	5 cut(s)	406, 463, 606, 640, 700
MboII	GAAGA	2 cut(s)	134, 521
MhlI	GDGCHC	4 cut(s)	118, 129, 810, 825
MlsI	TGGCCA	1 cut(s)	343
MluCI	AATT	7 cut(s)	211, 288, 323, 359, 521, 705, 857
MluNI	TGGCCA	1 cut(s)	343
MnlI	CCTC	3 cut(s)	174, 654, 739
Mox20I	TGGCCA	1 cut(s)	343
Mph1103I	ATGCAT	2 cut(s)	196, 910
MroI	TCCGGA	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	343
MseI	TTAA	4 cut(s)	210, 294, 500, 777
MslI	CAYNNNNRTG	2 cut(s)	35, 594
Msp20I	TGGCCA	1 cut(s)	343
MspI	CCGG	4 cut(s)	27, 71, 112, 167
MspR9I	CCNGG	2 cut(s)	72, 113
Mva1269I	GAATGC	1 cut(s)	30
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	905, 914
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	2 cut(s)	72, 113
NdeII	GATC	5 cut(s)	406, 463, 606, 640, 700
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	6 cut(s)	142, 413, 461, 593, 717, 908
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	2 cut(s)	196, 910
NspI	RCATGY	1 cut(s)	908
PaqCI	CACCTGC	1 cut(s)	662
PceI	AGGCCT	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	30
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	847
PkrI	GCNGC	1 cut(s)	901
Ple19I	CGATCG	1 cut(s)	703
Psp124BI	GAGCTC	2 cut(s)	129, 810
PspFI	CCCAGC	1 cut(s)	152
PvuI	CGATCG	1 cut(s)	703
RsaI	GTAC	2 cut(s)	455, 798
RsaNI	GTAC	2 cut(s)	454, 797
RseI	CAYNNNNRTG	2 cut(s)	35, 594
SacI	GAGCTC	2 cut(s)	129, 810
SalI	GTCGAC	1 cut(s)	475
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	210, 294, 500, 777
SatI	GCNGC	1 cut(s)	900
Sau3AI	GATC	5 cut(s)	406, 463, 606, 640, 700
ScrFI	CCNGG	2 cut(s)	72, 113
SduI	GDGCHC	4 cut(s)	118, 129, 810, 825
SetI	ASST	8 cut(s)	83, 108, 129, 185, 676, 690, 810, 882
SfaNI	GCATC	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	35, 594
Sse9I	AATT	7 cut(s)	211, 288, 323, 359, 521, 705, 857
SseBI	AGGCCT	1 cut(s)	282
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	270, 854
SstI	GAGCTC	2 cut(s)	129, 810
StuI	AGGCCT	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	70, 111
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	22, 834
TaiI	ACGT	2 cut(s)	108, 882
TaqI	TCGA	5 cut(s)	120, 222, 476, 703, 709
TasI	AATT	7 cut(s)	211, 288, 323, 359, 521, 705, 857
TfiI	GAWTC	1 cut(s)	847
Tru1I	TTAA	4 cut(s)	210, 294, 500, 777
Tru9I	TTAA	4 cut(s)	210, 294, 500, 777
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	899
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	127, 642, 655
TspGWI	ACGGA	4 cut(s)	112, 233, 569, 646
TspRI	CASTG	1 cut(s)	42
XapI	RAATTY	4 cut(s)	323, 521, 705, 857
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	1 cut(s)	908
XmiI	GTMKAC	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	2 cut(s)	270, 854
ZraI	GACGTC	1 cut(s)	880
Zsp2I	ATGCAT	2 cut(s)	196, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.