pycom11g24310

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000805
Physical Location & Seq
Forward (+)
27254459 .. 27254917
459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g24310.1

Sequence Viewer

Length: 459 bp
ATGACCATGAGCACCCAAGCAGCAGCGGCCAAAATTCCAGTGGTAGATTTCTCCATGGACGGCATGAAGCCCGGGACACGTTCTTGGCTCTCAATACGCGACGACGTTTGCCATGCACTTGAAGAGCTTGGCTGTTTCATAGCAATCCTGCCCAACAAACTTCCTTTGGAGGAGCTTCACAACTCCTTCGTTGGTGCATTGAAAGAGTTGTTAGATTTCCCCATGGACGTCAAAGTGCGAGACAAAAAAGGGGCCTATTTATCTATCAATCCTCCCCATGAAGGATTGGGGGCGCTTAATAACACCTCTGAAGAAATTCAGAAGTTCACTCGTCATTTTTGGCCTAATGGAAACGATCTTTTTTGGTATGATTTTGTAGACATATTTTTTACATATCAACAACTCTCGTCTTTAAGATTTAAACTCGACATAATTTACATTTTTTCTGTAGTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

153

Amino Acids

17.36

Weight (kDa)

5.28

Isoelectric Point (pI)

28.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AccI GTMKAC 1 cut(s) 378
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 2 cut(s) 33, 315
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 2 cut(s) 122, 202
AluBI AGCT 2 cut(s) 127, 175
AluI AGCT 2 cut(s) 127, 175
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 3 cut(s) 27, 252, 341
ApeKI GCWGC 2 cut(s) 20, 23
ApoI RAATTY 2 cut(s) 33, 315
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 2 cut(s) 72, 73
AvaI CYCGRG 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 32, 35
BceAI ACGGC 1 cut(s) 76
BcnI CCSGG 2 cut(s) 72, 73
BcoDI GTCTC 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 447
BfoI RGCGCY 1 cut(s) 296
BisI GCNGC 3 cut(s) 21, 24, 27
BlsI GCNGC 3 cut(s) 22, 25, 28
Bme1390I CCNGG 2 cut(s) 72, 73
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 72, 73
BpuMI CCSGG 2 cut(s) 72, 73
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 54, 71, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 54, 71, 222
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 32, 35
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 29, 254, 343
BsiHKAI GWGCWC 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 3 cut(s) 29, 254, 343
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 355
Bsp19I CCATGG 2 cut(s) 54, 222
BspACI CCGC 1 cut(s) 26
BspANI GGCC 3 cut(s) 29, 254, 343
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 253
BspQI GCTCTTC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 3 cut(s) 54, 71, 222
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 54, 222
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 228
BstDSI CCRYGG 2 cut(s) 54, 222
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 70, 71
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 32, 35
BsuRI GGCC 3 cut(s) 29, 254, 343
BtgI CCRYGG 2 cut(s) 54, 222
BtsIMutI CAGTG 1 cut(s) 45
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 252
Cfr9I CCCGGG 1 cut(s) 71
CviAII CATG 6 cut(s) 7, 55, 64, 113, 223, 278
CviJI RGCY 8 cut(s) 29, 70, 88, 127, 132, 175, 254, 343
CviKI_1 RGCY 8 cut(s) 29, 70, 88, 127, 132, 175, 254, 343
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DraI TTTAAA 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 54, 222
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 54, 222
ErhI CCWWGG 2 cut(s) 54, 222
FaeI CATG 6 cut(s) 10, 58, 67, 116, 226, 281
FaqI GGGAC 1 cut(s) 88
FatI CATG 6 cut(s) 6, 54, 63, 112, 222, 277
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 21, 24, 27
Fsp4HI GCNGC 3 cut(s) 21, 24, 27
GlaI GCGC 1 cut(s) 294
GluI GCNGC 3 cut(s) 21, 24, 27
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 3 cut(s) 29, 254, 343
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 295
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 6 cut(s) 10, 58, 67, 116, 226, 281
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 327, 379
Hpy188I TCNGA 2 cut(s) 310, 321
Hpy8I GTNNAC 2 cut(s) 327, 379
Hpy99I CGWCG 2 cut(s) 104, 107
HpyAV CCTTC 2 cut(s) 196, 275
HpyCH4IV ACGT 3 cut(s) 79, 105, 228
HpyCH4V TGCA 2 cut(s) 116, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpySE526I ACGT 3 cut(s) 79, 105, 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 6 cut(s) 10, 58, 67, 116, 226, 281
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 1 cut(s) 355
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 51, 85, 161
Lsp1109I GCAGC 2 cut(s) 32, 35
MaeII ACGT 3 cut(s) 79, 105, 228
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 134, 323
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 3 cut(s) 33, 315, 432
MnlI CCTC 3 cut(s) 163, 282, 316
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 3 cut(s) 297, 413, 420
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 2 cut(s) 72, 73
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 2 cut(s) 72, 73
NcoI CCATGG 2 cut(s) 54, 222
NdeII GATC 1 cut(s) 355
NlaIII CATG 6 cut(s) 10, 58, 67, 116, 226, 281
NlaIV GGNNCC 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 315
PkrI GCNGC 3 cut(s) 22, 25, 28
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 3 cut(s) 297, 413, 420
SatI GCNGC 3 cut(s) 21, 24, 27
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 72, 73
SduI GDGCHC 1 cut(s) 14
SetI ASST 6 cut(s) 82, 108, 129, 177, 231, 308
SfcI CTRYAG 1 cut(s) 447
SmaI CCCGGG 1 cut(s) 73
Sse9I AATT 3 cut(s) 33, 315, 432
SsiI CCGC 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 70, 71
StyI CCWWGG 2 cut(s) 54, 222
TaiI ACGT 3 cut(s) 82, 108, 231
TaqI TCGA 1 cut(s) 426
TasI AATT 3 cut(s) 33, 315, 432
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 297, 413, 420
Tru9I TTAA 3 cut(s) 297, 413, 420
TscAI CASTG 1 cut(s) 45
TseI GCWGC 2 cut(s) 20, 23
TspDTI ATGAA 3 cut(s) 80, 127, 294
TspMI CCCGGG 1 cut(s) 71
TspRI CASTG 1 cut(s) 45
XapI RAATTY 2 cut(s) 33, 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmaI CCCGGG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 315
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.