Rh2DG205500

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000805
Physical Location & Seq
Reverse (-)
19308363 .. 19309726
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG205500.1

Sequence Viewer

Length: 570 bp
ATGACCCAGATTCCAGTGGTAGATTTCTCAGATCCCGAGTGCTTGAAGCCAGGGACAAGTTCATGGCTCTCGGCACGCAATCAAGTTTGCAATGCACTCGAGGATCAGTTTGGCTGTTTTACAGCGATACTGTCCAACAAAGTTACCTTGGAACTTCACAACACCGTCTTTGGTGCCGTGAACGAGTTGTTTGAATCCCCAGATGGCATCAAAGATCAGAACAAGTACGAAAAATGGCCTTTCTGTGGCCATTTCAAGTCGAATTCCGTCCATGAAGGCTTGGGGATTTATGATCCTACAAACCCCGAAGAAATTCACAAGTTTTCACATCTTTTTTGGCCTACTGGAAATGATCAATTTTGGGTCAACCTGATTCACTCAGATCAGATAAGATACTCGTTTGGGCTCTTCTCACTCAAACGAGGAGTAACAACCGTACCGGAGGAGCTGGTGGACAAGGATCATCCTTTAAAGTATAAGCCGTTGAATCAGGTTGAGTATATTCAAGCGCAGGGTTACAAAGATGGTGAAGGACATGAGTGTAAGCTCAAGGCATTCTGTGGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

189

Amino Acids

21.51

Weight (kDa)

5.43

Isoelectric Point (pI)

23.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AclWI GGATC 4 cut(s) 26, 111, 287, 468
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 262, 312
AfaI GTAC 2 cut(s) 227, 438
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 5 cut(s) 46, 194, 256, 487, 506
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 2 cut(s) 448, 547
AluI AGCT 2 cut(s) 448, 547
AlwI GGATC 4 cut(s) 26, 111, 287, 468
Ama87I CYCGRG 2 cut(s) 35, 98
AoxI GGCC 3 cut(s) 236, 247, 338
ApoI RAATTY 2 cut(s) 262, 312
Asp700I GAANNNNTTC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 511
AsuHPI GGTGA 1 cut(s) 539
AvaI CYCGRG 2 cut(s) 35, 98
BaeI ACNNNNGTAYC 2 cut(s) 420, 453
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 408
BccI CCATC 2 cut(s) 197, 518
BceAI ACGGC 2 cut(s) 161, 466
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 51
BmeT110I CYCGRG 2 cut(s) 35, 98
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 50, 147
BsaWI WCCGGW 1 cut(s) 439
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 14, 349
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 50, 147
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 42, 393
BseNI ACTGG 2 cut(s) 14, 349
BseRI GAGGAG 2 cut(s) 438, 458
BshFI GGCC 3 cut(s) 238, 249, 340
BshNI GGYRCC 1 cut(s) 173
BsiHKCI CYCGRG 2 cut(s) 35, 98
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 3 cut(s) 238, 249, 340
BsoBI CYCGRG 2 cut(s) 35, 98
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 7 cut(s) 31, 103, 214, 292, 352, 382, 460
BspANI GGCC 3 cut(s) 238, 249, 340
BspCNI CTCAG 2 cut(s) 41, 392
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 4 cut(s) 26, 111, 287, 468
BspQI GCTCTTC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 2 cut(s) 14, 349
BssECI CCNNGG 2 cut(s) 50, 147
BssMI GATC 7 cut(s) 31, 103, 214, 292, 352, 382, 460
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 132, 166, 436
Bst6I CTCTTC 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 28, 379
BstF5I GGATG 1 cut(s) 463
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 7 cut(s) 34, 106, 217, 295, 355, 385, 463
BstMBI GATC 7 cut(s) 31, 103, 214, 292, 352, 382, 460
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 3 cut(s) 238, 249, 340
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 511
Csp6I GTAC 2 cut(s) 226, 437
CviAII CATG 3 cut(s) 63, 272, 536
CviQI GTAC 2 cut(s) 226, 437
DdeI CTNAG 2 cut(s) 28, 379
DpnI GATC 7 cut(s) 33, 105, 216, 294, 354, 384, 462
DpnII GATC 7 cut(s) 31, 103, 214, 292, 352, 382, 460
DraI TTTAAA 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 408
Eco88I CYCGRG 2 cut(s) 35, 98
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 66, 275, 539
FaiI YATR 6 cut(s) 64, 273, 291, 477, 501, 537
FaqI GGGAC 1 cut(s) 67
FatI CATG 3 cut(s) 62, 271, 535
FbaI TGATCA 1 cut(s) 352
FokI GGATG 1 cut(s) 450
FriOI GRGCYC 1 cut(s) 408
GlaI GCGC 1 cut(s) 510
HaeIII GGCC 3 cut(s) 238, 249, 340
HapII CCGG 1 cut(s) 440
HhaI GCGC 1 cut(s) 511
Hin1II CATG 3 cut(s) 66, 275, 539
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 4 cut(s) 10, 194, 373, 487
HpaII CCGG 1 cut(s) 440
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 3 cut(s) 181, 367, 454
Hpy188I TCNGA 4 cut(s) 31, 219, 382, 387
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 3 cut(s) 181, 367, 454
HpyAV CCTTC 2 cut(s) 269, 524
HpyCH4III ACNGT 3 cut(s) 132, 166, 436
HpyCH4V TGCA 2 cut(s) 90, 95
HpyF3I CTNAG 2 cut(s) 28, 379
Hsp92II CATG 3 cut(s) 66, 275, 539
HspAI GCGC 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 7 cut(s) 31, 103, 214, 292, 352, 382, 460
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 1 cut(s) 445
LweI GCATC 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 142, 427, 515
MalI GATC 7 cut(s) 33, 105, 216, 294, 354, 384, 462
MboI GATC 7 cut(s) 31, 103, 214, 292, 352, 382, 460
MboII GAAGA 2 cut(s) 320, 400
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 408
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 3 cut(s) 262, 312, 356
MluNI TGGCCA 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 3 cut(s) 94, 416, 436
Mox20I TGGCCA 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 1 cut(s) 51
NdeII GATC 7 cut(s) 31, 103, 214, 292, 352, 382, 460
NlaIII CATG 3 cut(s) 66, 275, 539
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 50
PaeR7I CTCGAG 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 413
PctI GAATGC 1 cut(s) 554
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 4 cut(s) 10, 194, 373, 487
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 98
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 2 cut(s) 227, 438
RsaNI GTAC 2 cut(s) 226, 437
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 470
Sau3AI GATC 7 cut(s) 31, 103, 214, 292, 352, 382, 460
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 408
SetI ASST 5 cut(s) 149, 372, 450, 495, 549
SfaNI GCATC 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 98, 548
SmoI CTYRAG 2 cut(s) 98, 548
Sse9I AATT 3 cut(s) 262, 312, 356
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 132, 166, 436
TaqI TCGA 2 cut(s) 99, 260
TasI AATT 3 cut(s) 262, 312, 356
TfiI GAWTC 4 cut(s) 10, 194, 373, 487
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 51, 288
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 21
XapI RAATTY 2 cut(s) 262, 312
XhoI CTCGAG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.