Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Reverse (-)

34457301 .. 34458985

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1268200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCCAAACTTACAGTGGTAGATTTCTCCGATAAAGACTGCTTCAAGCCAGGGACCAGTTCTTGGCTCTCATTACGCAAAGACATTTGTCATGCACTTGAAGAGCTTGGTTGTTTCGTGGCAAAACTACCCGACCTAATTCCTTCTGAGATTCACAGTCCCTTCTTTGGTACGTTGGATGAGTTGTTTGATTTCCCAACCGAAACCAAGCTGCAAATTACTTATGAAAGGCCTTTCCCCATGGGCTACATATCTTTGAACGCGGCTAATGAAAGCTTGGCGATTGGTTATCCTACAAACCCTGAAGAAACTAAAAAGTTTACGCATCACTTTTGGCCCAATGGAAACGATCAATTCTGTCAGGGTGCTGATTTGTATGCAAAAATGATGGAAAAGGTAGATCATGCTGTGACAAGAATGGTGTTTGAAAACTATGGCGTAGAGAAGTACCATGATGATCACATTCGATCAGTTATTTACTCCTGCAAATTTAATAAATACAATGAACCTGAGAAAAGTGGAATTGATGTGGGAATGCCCGGCCATACAGACAAGGGCTTTAGCACCGTACTCTGTCAAAATCATGTCAAAGGTCTGGAAATAAAGTCAAAGAACGATGAGTGGATTTCTTTTGATCCTGCGCCTTCATCCTTAATCTTTATAGCTGGTGATGGATTTAAGGTTTGGAGCAACGACAGAATTCAAGCTTGTAAACATCGAGTCACCTTAAGGGAGAATGGTGTAAGACACTCGTTAGCTCTATTTTCATACAAAGAAGGGGAAACATGCGTACCCAATGAGCTTGTAGACAAGGACCACCCCCTAAAGTATAAGCCATTGCATCTGTTAGAATATGTTCAATATTTCATGGAGAATTACCCCACACTTGGACCTAACTTTTCCATCAAGACATATTGTGGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

309

Amino Acids

35.22

Weight (kDa)

5.81

Isoelectric Point (pI)

26.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	162 - 255	8.4e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	807
AccII	CGCG	1 cut(s)	263
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	2 cut(s)	3, 541
AcsI	RAATTY	2 cut(s)	488, 699
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	4 cut(s)	172, 449, 570, 792
AfiI	CCNNNNNNNGG	3 cut(s)	63, 167, 887
AflII	CTTAAG	1 cut(s)	727
AgsI	TTSAA	6 cut(s)	46, 101, 259, 428, 704, 860
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	7 cut(s)	106, 211, 276, 665, 707, 758, 802
AluI	AGCT	7 cut(s)	106, 211, 276, 665, 707, 758, 802
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	4 cut(s)	3, 230, 335, 541
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	2 cut(s)	488, 699
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	4 cut(s)	54, 336, 814, 890
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	2 cut(s)	680, 715
AvaII	GGWCC	3 cut(s)	54, 814, 890
BaeI	ACNNNNGTAYC	2 cut(s)	774, 807
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	3 cut(s)	382, 665, 911
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	540
BfrI	CTTAAG	1 cut(s)	727
BisI	GCNGC	2 cut(s)	212, 264
BlsI	GCNGC	2 cut(s)	213, 265
Bme1390I	CCNGG	2 cut(s)	51, 540
Bme18I	GGWCC	3 cut(s)	54, 814, 890
BmgT120I	GGNCC	4 cut(s)	54, 336, 814, 890
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	51, 540
BmsI	GCATC	2 cut(s)	334, 850
BoxI	GACNNNNGTC	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	50, 240
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 167, 887
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	836
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	50, 240
BseGI	GGATG	2 cut(s)	184, 647
BseLI	CCNNNNNNNGG	3 cut(s)	63, 167, 887
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	2 cut(s)	138, 501
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	4 cut(s)	5, 232, 337, 543
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	2 cut(s)	67, 144
BslI	CCNNNNNNNGG	3 cut(s)	63, 167, 887
BsmFI	GGGAC	2 cut(s)	67, 144
BsmI	GAATGC	1 cut(s)	540
BsnI	GGCC	4 cut(s)	5, 232, 337, 543
Bsp143I	GATC	5 cut(s)	349, 400, 457, 467, 634
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	4 cut(s)	5, 232, 337, 543
BspCNI	CTCAG	2 cut(s)	139, 502
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	96
BspTI	CTTAAG	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	836
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	50, 240
BssMI	GATC	5 cut(s)	349, 400, 457, 467, 634
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	3 cut(s)	16, 158, 568
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	727
BstDEI	CTNAG	2 cut(s)	147, 510
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	184, 647
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	5 cut(s)	352, 403, 460, 470, 637
BstMBI	GATC	5 cut(s)	349, 400, 457, 467, 634
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	789
BstPAI	GACNNNNGTC	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	49, 538
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	198
BsuRI	GGCC	4 cut(s)	5, 232, 337, 543
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	184, 647
BtsIMutI	CAGTG	1 cut(s)	21
CfoI	GCGC	1 cut(s)	643
Cfr13I	GGNCC	4 cut(s)	54, 336, 814, 890
Csp6I	GTAC	4 cut(s)	171, 448, 569, 791
CviAII	CATG	7 cut(s)	92, 241, 404, 452, 584, 786, 868
CviQI	GTAC	4 cut(s)	171, 448, 569, 791
DdeI	CTNAG	2 cut(s)	147, 510
DpnI	GATC	5 cut(s)	351, 402, 459, 469, 636
DpnII	GATC	5 cut(s)	349, 400, 457, 467, 634
EaeI	YGGCCR	2 cut(s)	3, 541
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	3 cut(s)	54, 814, 890
Eco57I	CTGAAG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	7 cut(s)	95, 244, 407, 455, 587, 789, 871
FaqI	GGGAC	2 cut(s)	67, 144
FatI	CATG	7 cut(s)	91, 240, 403, 451, 583, 785, 867
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	2 cut(s)	212, 264
FokI	GGATG	2 cut(s)	191, 634
Fsp4HI	GCNGC	2 cut(s)	212, 264
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	2 cut(s)	212, 264
HaeIII	GGCC	4 cut(s)	5, 232, 337, 543
HapII	CCGG	1 cut(s)	540
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	7 cut(s)	95, 244, 407, 455, 587, 789, 871
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HindIII	AAGCTT	2 cut(s)	274, 705
HinfI	GANTC	2 cut(s)	151, 720
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	2 cut(s)	680, 715
Hpy166II	GTNNAC	3 cut(s)	321, 713, 808
Hpy188I	TCNGA	2 cut(s)	31, 148
Hpy188III	TCNNGA	2 cut(s)	596, 907
Hpy8I	GTNNAC	3 cut(s)	321, 713, 808
HpyAV	CCTTC	4 cut(s)	153, 172, 654, 770
HpyCH4III	ACNGT	3 cut(s)	16, 158, 568
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	5 cut(s)	95, 214, 380, 486, 841
HpyF3I	CTNAG	2 cut(s)	147, 510
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	7 cut(s)	95, 244, 407, 455, 587, 789, 871
HspAI	GCGC	1 cut(s)	641
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	5 cut(s)	349, 400, 457, 467, 634
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	687
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	2 cut(s)	334, 850
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	409, 721
MalI	GATC	5 cut(s)	351, 402, 459, 469, 636
MboI	GATC	5 cut(s)	349, 400, 457, 467, 634
MboII	GAAGA	2 cut(s)	113, 317
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	138, 216, 353, 488, 522, 699, 874
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	729
MmeI	TCCRAC	1 cut(s)	156
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	492, 653, 678, 728
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	727
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	2 cut(s)	51, 540
Mva1269I	GAATGC	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	263
NciI	CCSGG	1 cut(s)	540
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	5 cut(s)	349, 400, 457, 467, 634
NlaIII	CATG	7 cut(s)	95, 244, 407, 455, 587, 789, 871
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	409, 721
NspI	RCATGY	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	96
PctI	GAATGC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	213, 265
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
PshAI	GACNNNNGTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	4 cut(s)	54, 336, 814, 890
RsaI	GTAC	4 cut(s)	172, 449, 570, 792
RsaNI	GTAC	4 cut(s)	171, 448, 569, 791
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	4 cut(s)	492, 653, 678, 728
SatI	GCNGC	2 cut(s)	212, 264
Sau3AI	GATC	5 cut(s)	349, 400, 457, 467, 634
Sau96I	GGNCC	4 cut(s)	54, 336, 814, 890
SchI	GAGTC	1 cut(s)	729
ScrFI	CCNGG	2 cut(s)	51, 540
SfaNI	GCATC	2 cut(s)	334, 850
SinI	GGWCC	3 cut(s)	54, 814, 890
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
Sse9I	AATT	7 cut(s)	138, 216, 353, 488, 522, 699, 874
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	263
SspI	AATATT	1 cut(s)	863
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	49, 538
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	16, 158, 568
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	466, 718
TasI	AATT	7 cut(s)	138, 216, 353, 488, 522, 699, 874
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	4 cut(s)	492, 653, 678, 728
Tru9I	TTAA	4 cut(s)	492, 653, 678, 728
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	409, 721
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	2 cut(s)	409, 721
TspDTI	ATGAA	6 cut(s)	240, 285, 519, 636, 756, 856
TspRI	CASTG	1 cut(s)	21
Van91I	CCANNNNNTGG	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	727
VpaK11BI	GGWCC	3 cut(s)	54, 814, 890
XapI	RAATTY	2 cut(s)	488, 699
XceI	RCATGY	1 cut(s)	789
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	807
XmnI	GAANNNNTTC	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.