pycom09g10590

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000805
Physical Location & Seq
Reverse (-)
8651083 .. 8652230
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10590.3

Sequence Viewer

Length: 933 bp
ATGGATACCAGGGATGGATTTCTTCCGGTGTTAGATTTCTCCAAAGAGGACTGCTTGAAGCCAGGGACAAGTTCTTGGCTCTCCGTCCGCAGGGAGGTTTGCCGTGCACTGGAAGAGCTCGGCGGTTTCATGGCGATAATGCCCGACAAAGTTTCTGCTGAGCTCCACCAAACCATCTTTGGTGCACTGAAGGACTTGTTTGAGTTCCCTGCCGAACTCAAATCCAAAAACCGATACGAAGAGAATCCATTTTGTGGCCATTTCATATATAATTCTGTCCATGAGAGCTTGGGGATTCAGAATCCCACACACTCGGAAGAAACTCAGAAATTCACACATCTTTTCTGGCCTAACCAAAATGATCGATTCCGTGATAGTGTAGATTCATATGCAAAGGTGATGATGGAGCTTGATCATGTTGTAACAAGAATGGTATTCGAAAACTACGGTATGGAGAAGTACCATGACAAACACATTCGATCTACTTCTCACTTTATCCAGTTTGCTAAATACAAAGAACCCAGAAAAGCTGGAAGCGATGTGGGTTTAGTGAGTCACACTGACAAGAACTTCAACACAATTCTTCATCAAAATCATGTCAACGGTCTGGAGATAAACACGGACGATGACGAGTGGATAATGTTCAATCCACATCTACCTTCATCCTTCCTTTTCATAGCTAGTGATGTGTTTAAGGTATGGAGTAACGGCAGAATACGAGCTTGTAGACACAGAGTCAACGTAAGAGAAAATGATGAGGCAAGATACTCGGTTGGATTTTTCTCTCTAAAGATAGGAGTAACAACCGTACCCAAGGAGCTTGTGGACGAAGAACACCCCTTACGTTACAAGTCACTAGACCAAGTGGAGTATATTCAAGCACAAAGGAAAAATGGAATTGAGTGCACACCTGAGGCATACTGCGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

311

Amino Acids

35.99

Weight (kDa)

5.92

Isoelectric Point (pI)

26.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 254
AccI GTMKAC 1 cut(s) 727
AciI CCGC 3 cut(s) 88, 123, 924
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 209
AfaI GTAC 2 cut(s) 461, 810
AfiI CCNNNNNNNGG 4 cut(s) 90, 94, 109, 254
AgsI TTSAA 4 cut(s) 58, 574, 646, 878
AhdI GACNNNNNGTC 1 cut(s) 734
AjnI CCWGG 2 cut(s) 8, 61
AluBI AGCT 8 cut(s) 118, 163, 288, 409, 530, 680, 722, 820
AluI AGCT 8 cut(s) 118, 163, 288, 409, 530, 680, 722, 820
Alw21I GWGCWC 5 cut(s) 109, 120, 165, 187, 908
Alw44I GTGCAC 3 cut(s) 105, 183, 904
AoxI GGCC 2 cut(s) 256, 347
ApaLI GTGCAC 3 cut(s) 105, 183, 904
ApoI RAATTY 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 409
AsuII TTCGAA 1 cut(s) 438
AxyI CCTNAGG 1 cut(s) 912
BaeGI GKGCMC 3 cut(s) 109, 187, 908
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BalI TGGCCA 1 cut(s) 258
BanII GRGCYC 2 cut(s) 120, 165
Bbv12I GWGCWC 5 cut(s) 109, 120, 165, 187, 908
BccI CCATC 3 cut(s) 8, 182, 397
BceAI ACGGC 2 cut(s) 87, 724
BcgI CGANNNNNNTGC 2 cut(s) 750, 784
BciT130I CCWGG 2 cut(s) 10, 63
BclI TGATCA 1 cut(s) 412
BfaI CTAG 2 cut(s) 681, 857
BlpI GCTNAGC 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 10, 63
BmeRI GACNNNNNGTC 1 cut(s) 734
BmrFI CCNGG 2 cut(s) 10, 63
BpmI CTGGAG 1 cut(s) 629
Bpu1102I GCTNAGC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 364
BsaJI CCNNGG 3 cut(s) 9, 62, 813
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 94, 109, 254
Bse1I ACTGG 2 cut(s) 114, 499
Bse21I CCTNAGG 1 cut(s) 912
BseBI CCWGG 2 cut(s) 10, 63
BseCI ATCGAT 1 cut(s) 364
BseDI CCNNGG 3 cut(s) 9, 62, 813
BseGI GGATG 2 cut(s) 19, 662
BseLI CCNNNNNNNGG 4 cut(s) 90, 94, 109, 254
BseMII CTCAG 3 cut(s) 150, 338, 903
BseNI ACTGG 2 cut(s) 114, 499
BseSI GKGCMC 3 cut(s) 109, 187, 908
BshFI GGCC 2 cut(s) 258, 349
BshVI ATCGAT 1 cut(s) 364
BsiHKAI GWGCWC 5 cut(s) 109, 120, 165, 187, 908
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 4 cut(s) 90, 94, 109, 254
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 258, 349
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 5 cut(s) 109, 120, 165, 187, 908
Bsp143I GATC 3 cut(s) 361, 412, 479
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 3 cut(s) 88, 123, 924
BspANI GGCC 2 cut(s) 258, 349
BspCNI CTCAG 3 cut(s) 151, 337, 904
BspDI ATCGAT 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 438
BsrI ACTGG 2 cut(s) 114, 499
BssECI CCNNGG 3 cut(s) 9, 62, 813
BssMI GATC 3 cut(s) 361, 412, 479
BssT1I CCWWGG 1 cut(s) 813
Bst2UI CCWGG 2 cut(s) 10, 63
Bst4CI ACNGT 3 cut(s) 449, 605, 808
Bst6I CTCTTC 2 cut(s) 108, 234
BstBI TTCGAA 1 cut(s) 438
BstDEI CTNAG 3 cut(s) 159, 324, 912
BstF5I GGATG 2 cut(s) 19, 662
BstKTI GATC 3 cut(s) 364, 415, 482
BstMBI GATC 3 cut(s) 361, 412, 479
BstNI CCWGG 2 cut(s) 10, 63
BstSCI CCNGG 2 cut(s) 8, 61
BstSLI GKGCMC 3 cut(s) 109, 187, 908
Bsu15I ATCGAT 1 cut(s) 364
Bsu36I CCTNAGG 1 cut(s) 912
BsuRI GGCC 2 cut(s) 258, 349
BsuTUI ATCGAT 1 cut(s) 364
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 2 cut(s) 19, 662
BtsIMutI CAGTG 3 cut(s) 107, 185, 558
ClaI ATCGAT 1 cut(s) 364
Csp6I GTAC 2 cut(s) 460, 809
CviAII CATG 5 cut(s) 130, 281, 416, 464, 596
CviQI GTAC 2 cut(s) 460, 809
DdeI CTNAG 3 cut(s) 159, 324, 912
DpnI GATC 3 cut(s) 363, 414, 481
DpnII GATC 3 cut(s) 361, 412, 479
DriI GACNNNNNGTC 1 cut(s) 734
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 108, 234
Eam1105I GACNNNNNGTC 1 cut(s) 734
EarI CTCTTC 2 cut(s) 108, 234
Ecl136II GAGCTC 2 cut(s) 118, 163
Eco130I CCWWGG 1 cut(s) 813
Eco24I GRGCYC 2 cut(s) 120, 165
Eco53kI GAGCTC 2 cut(s) 118, 163
Eco57I CTGAAG 1 cut(s) 209
Eco81I CCTNAGG 1 cut(s) 912
EcoICRI GAGCTC 2 cut(s) 118, 163
EcoRII CCWGG 2 cut(s) 8, 61
EcoT14I CCWWGG 1 cut(s) 813
EcoT38I GRGCYC 2 cut(s) 120, 165
ErhI CCWWGG 1 cut(s) 813
FaeI CATG 5 cut(s) 133, 284, 419, 467, 599
FaqI GGGAC 1 cut(s) 79
FatI CATG 5 cut(s) 129, 280, 415, 463, 595
FauNDI CATATG 1 cut(s) 388
FbaI TGATCA 1 cut(s) 412
FblI GTMKAC 1 cut(s) 727
FokI GGATG 2 cut(s) 26, 649
FriOI GRGCYC 2 cut(s) 120, 165
FspBI CTAG 2 cut(s) 681, 857
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 2 cut(s) 258, 349
HapII CCGG 1 cut(s) 26
Hin1II CATG 5 cut(s) 133, 284, 419, 467, 599
HincII GTYRAC 2 cut(s) 601, 739
HindII GTYRAC 2 cut(s) 601, 739
HinfI GANTC 7 cut(s) 244, 295, 301, 366, 383, 553, 735
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 7 cut(s) 107, 185, 601, 728, 739, 826, 906
Hpy188I TCNGA 3 cut(s) 300, 316, 327
Hpy188III TCNNGA 1 cut(s) 608
Hpy8I GTNNAC 7 cut(s) 107, 185, 601, 728, 739, 826, 906
HpyAV CCTTC 3 cut(s) 184, 669, 676
HpyCH4III ACNGT 3 cut(s) 449, 605, 808
HpyCH4IV ACGT 2 cut(s) 741, 844
HpyCH4V TGCA 4 cut(s) 107, 185, 392, 906
HpyF3I CTNAG 3 cut(s) 159, 324, 912
HpySE526I ACGT 2 cut(s) 741, 844
Hsp92II CATG 5 cut(s) 133, 284, 419, 467, 599
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 361, 412, 479
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 3 cut(s) 168, 406, 817
MaeI CTAG 2 cut(s) 681, 857
MaeII ACGT 2 cut(s) 741, 844
MaeIII GTNAC 6 cut(s) 421, 554, 704, 799, 845, 852
MalI GATC 3 cut(s) 363, 414, 481
MboI GATC 3 cut(s) 361, 412, 479
MboII GAAGA 6 cut(s) 14, 125, 251, 329, 575, 842
MhlI GDGCHC 5 cut(s) 109, 120, 165, 187, 908
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 4 cut(s) 271, 329, 579, 897
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 2 cut(s) 562, 744
MmeI TCCRAC 1 cut(s) 754
MnlI CCTC 4 cut(s) 40, 88, 751, 907
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MseI TTAA 1 cut(s) 693
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 10, 63
MvaI CCWGG 2 cut(s) 10, 63
NdeI CATATG 1 cut(s) 388
NdeII GATC 3 cut(s) 361, 412, 479
NlaIII CATG 5 cut(s) 133, 284, 419, 467, 599
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 2 cut(s) 554, 852
NspV TTCGAA 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 5 cut(s) 244, 295, 301, 366, 383
PflMI CCANNNNNTGG 1 cut(s) 254
PleI GAGTC 2 cut(s) 561, 743
PpsI GAGTC 2 cut(s) 561, 743
Psp124BI GAGCTC 2 cut(s) 120, 165
Psp6I CCWGG 2 cut(s) 8, 61
PspGI CCWGG 2 cut(s) 8, 61
PsrI GAACNNNNNNTAC 2 cut(s) 825, 857
RsaI GTAC 2 cut(s) 461, 810
RsaNI GTAC 2 cut(s) 460, 809
SacI GAGCTC 2 cut(s) 120, 165
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 693
Sau3AI GATC 3 cut(s) 361, 412, 479
SchI GAGTC 2 cut(s) 562, 744
ScrFI CCNGG 2 cut(s) 10, 63
SduI GDGCHC 5 cut(s) 109, 120, 165, 187, 908
SfuI TTCGAA 1 cut(s) 438
Sse9I AATT 4 cut(s) 271, 329, 579, 897
SsiI CCGC 3 cut(s) 88, 123, 924
SspMI CTAG 2 cut(s) 681, 857
SstI GAGCTC 2 cut(s) 120, 165
StyD4I CCNGG 2 cut(s) 8, 61
StyI CCWWGG 1 cut(s) 813
TaaI ACNGT 3 cut(s) 449, 605, 808
TaiI ACGT 2 cut(s) 744, 847
TaqI TCGA 3 cut(s) 364, 438, 478
TasI AATT 4 cut(s) 271, 329, 579, 897
TfiI GAWTC 5 cut(s) 244, 295, 301, 366, 383
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 3 cut(s) 114, 192, 565
TseFI GTSAC 2 cut(s) 554, 852
Tsp45I GTSAC 2 cut(s) 554, 852
TspDTI ATGAA 6 cut(s) 118, 253, 375, 575, 651, 664
TspGWI ACGGA 3 cut(s) 73, 359, 635
TspRI CASTG 3 cut(s) 114, 192, 565
Van91I CCANNNNNTGG 1 cut(s) 254
VneI GTGCAC 3 cut(s) 105, 183, 904
XapI RAATTY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 2 cut(s) 176, 820
XmiI GTMKAC 1 cut(s) 727
XspI CTAG 2 cut(s) 681, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.