Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Reverse (-)

36207463 .. 36208976

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G417300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAACATGAGTTCCCAAACTGTGGCCAGGATTCCAGTGGTAGATTTCTCGAAAGCGGACTGCCTGAAGCCGGGGACAAGCTCTTGGCTCTCAGCACGCAAAGACGTTTGTCGGGCGCTCGAAGAGCTCGGATGTTTCATGGCAATCCTACCCAGCAAAGTTCCTCCTGAACTTCACAAAACCATCTTTAATGCATTTGACGAGTTGTTTAATTTCCCCGTCGATACTCCTGACAACCCTTTACGTGCTGGCTACGTAACTTCCTGTTCTGGGCAGAATACCTTTGGAATTATTAATGGCACAAACCCTCAAGAAACTCAGGAATTCACACATCTTTTTTGGCCAAATGGAAACGACCAATTTCGTGAGACTGCTGACTTGTATGCAAAAGTGATGGCAGAGATAGATGAAGCTGTGACAAGAATGGTATTTGAAAACTATGGTGTAGAAAAGTACCATGACGATCACTTCCGATCGACTTTTTACTATCTCCGTCTTATAAAATACGAAGTACCCAAGAAACTTGGAGTTGATGTGGGTTTACGCAGTCATACGGACAAGACCTTTTCCTCCATACTCCATCAAAATCATGTCACTGGTCTGGAGATCAATACAAAGACTAATGAGTGGGTAGTTTTTGATCCTCTGCCTTCATCCGTGATATTCATGGCGGGAGACGTATTTCAGGTTTGGAGTAACGATCGAGTTCGACCGTGTAGACATAGAGTGACATTGAAGGAAAATGAGGTGAGATACTCGTTCGGACTGTTTTCACTGCATAAAGGGGTGATACATGTACCAGATGAGCTTCTGGACAAGGACCACCCCTTAAGGTATAAGCCTTTCAATCATCTAGAATTTCTTAGAGCACAGAAAGACCTCAGTGAAACTGAGTATGCCGCAAAGGCATATTGTGCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

35.25

Weight (kDa)

6.06

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	718
AciI	CCGC	3 cut(s)	56, 671, 900
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	2 cut(s)	24, 341
AcsI	RAATTY	2 cut(s)	323, 857
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	3 cut(s)	455, 513, 798
AfiI	CCNNNNNNNGG	3 cut(s)	22, 70, 270
AflII	CTTAAG	1 cut(s)	829
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	3 cut(s)	434, 736, 847
AjnI	CCWGG	1 cut(s)	26
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	81, 127, 413, 808
AluI	AGCT	4 cut(s)	81, 127, 413, 808
Alw21I	GWGCWC	2 cut(s)	129, 871
Alw26I	GTCTC	2 cut(s)	362, 669
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	2 cut(s)	24, 341
ApoI	RAATTY	2 cut(s)	323, 857
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	820
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	760, 799
AvaII	GGWCC	1 cut(s)	820
BalI	TGGCCA	2 cut(s)	26, 343
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	129, 871
BccI	CCATC	3 cut(s)	191, 388, 588
BciT130I	CCWGG	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	362, 669
BfaI	CTAG	1 cut(s)	854
BfoI	RGCGCY	1 cut(s)	119
BfrI	CTTAAG	1 cut(s)	829
BglI	GCCNNNNNGGC	1 cut(s)	905
BisI	GCNGC	1 cut(s)	900
BlsI	GCNGC	1 cut(s)	901
Bme1390I	CCNGG	2 cut(s)	28, 72
Bme18I	GGWCC	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	820
BmrFI	CCNGG	2 cut(s)	28, 72
BoxI	GACNNNNGTC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	2 cut(s)	245, 256
BsaJI	CCNNGG	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 70, 270
Bse1I	ACTGG	2 cut(s)	35, 601
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	137, 653
BseLI	CCNNNNNNNGG	3 cut(s)	22, 70, 270
BseMII	CTCAG	4 cut(s)	105, 332, 882, 895
BseNI	ACTGG	2 cut(s)	35, 601
BseYI	CCCAGC	1 cut(s)	152
Bsh1285I	CGRYCG	3 cut(s)	476, 703, 713
BshFI	GGCC	2 cut(s)	26, 343
BsiEI	CGRYCG	3 cut(s)	476, 703, 713
BsiHKAI	GWGCWC	2 cut(s)	129, 871
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	3 cut(s)	22, 70, 270
BsmAI	GTCTC	2 cut(s)	362, 669
BsmBI	CGTCTC	1 cut(s)	669
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	26, 343
Bsp1286I	GDGCHC	2 cut(s)	129, 871
Bsp143I	GATC	5 cut(s)	463, 473, 606, 640, 700
BspACI	CCGC	3 cut(s)	56, 671, 900
BspANI	GGCC	2 cut(s)	26, 343
BspCNI	CTCAG	4 cut(s)	104, 331, 883, 894
BspPI	GGATC	1 cut(s)	635
BspQI	GCTCTTC	1 cut(s)	117
BspTI	CTTAAG	1 cut(s)	829
BsrI	ACTGG	2 cut(s)	35, 601
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	5 cut(s)	463, 473, 606, 640, 700
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	3 cut(s)	22, 714, 768
Bst6I	CTCTTC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	829
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstBAI	YACGTR	2 cut(s)	245, 256
BstC8I	GCNNGC	2 cut(s)	97, 250
BstDEI	CTNAG	5 cut(s)	91, 318, 863, 881, 891
BstF5I	GGATG	2 cut(s)	137, 653
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	5 cut(s)	466, 476, 609, 643, 703
BstMAI	GTCTC	2 cut(s)	362, 669
BstMBI	GATC	5 cut(s)	463, 473, 606, 640, 700
BstMCI	CGRYCG	3 cut(s)	476, 703, 713
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 905, 914
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	797
BstPAI	GACNNNNGTC	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	26, 70
BstSNI	TACGTA	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	26, 343
BtsCI	GGATG	2 cut(s)	137, 653
BtsI	GCAGTG	1 cut(s)	773
BtsIMutI	CAGTG	4 cut(s)	42, 594, 773, 889
Cac8I	GCNNGC	2 cut(s)	97, 250
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	820
Csp6I	GTAC	3 cut(s)	454, 512, 797
CviAII	CATG	6 cut(s)	7, 139, 458, 590, 667, 794
CviQI	GTAC	3 cut(s)	454, 512, 797
DdeI	CTNAG	5 cut(s)	91, 318, 863, 881, 891
DpnI	GATC	5 cut(s)	465, 475, 608, 642, 702
DpnII	GATC	5 cut(s)	463, 473, 606, 640, 700
EaeI	YGGCCR	2 cut(s)	24, 341
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	127
Eco105I	TACGTA	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	820
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	6 cut(s)	10, 142, 461, 593, 670, 797
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	6 cut(s)	6, 138, 457, 589, 666, 793
FauI	CCCGC	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	718
Fnu4HI	GCNGC	1 cut(s)	900
FokI	GGATG	2 cut(s)	144, 640
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	900
FspBI	CTAG	1 cut(s)	854
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	900
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	623
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	26, 343
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	6 cut(s)	10, 142, 461, 593, 670, 797
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	760, 799
Hpy166II	GTNNAC	2 cut(s)	542, 719
Hpy188I	TCNGA	3 cut(s)	131, 473, 764
Hpy188III	TCNNGA	9 cut(s)	49, 167, 230, 311, 320, 365, 602, 812, 854
Hpy8I	GTNNAC	2 cut(s)	542, 719
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	660, 730
HpyCH4III	ACNGT	3 cut(s)	22, 714, 768
HpyCH4IV	ACGT	4 cut(s)	105, 244, 255, 678
HpyCH4V	TGCA	3 cut(s)	194, 386, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 905, 914
HpyF3I	CTNAG	5 cut(s)	91, 318, 863, 881, 891
HpySE526I	ACGT	4 cut(s)	105, 244, 255, 678
Hsp92II	CATG	6 cut(s)	10, 142, 461, 593, 670, 797
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	5 cut(s)	463, 473, 606, 640, 700
LguI	GCTCTTC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	854
MaeII	ACGT	4 cut(s)	105, 244, 255, 678
MaeIII	GTNAC	5 cut(s)	256, 415, 592, 695, 727
MalI	GATC	5 cut(s)	465, 475, 608, 642, 702
MboI	GATC	5 cut(s)	463, 473, 606, 640, 700
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	2 cut(s)	129, 871
MlsI	TGGCCA	2 cut(s)	26, 343
MluCI	AATT	5 cut(s)	211, 288, 323, 359, 857
MluNI	TGGCCA	2 cut(s)	26, 343
MnlI	CCTC	6 cut(s)	174, 318, 580, 654, 739, 890
Mox20I	TGGCCA	2 cut(s)	26, 343
Mph1103I	ATGCAT	1 cut(s)	196
MscI	TGGCCA	2 cut(s)	26, 343
MseI	TTAA	4 cut(s)	189, 210, 294, 830
Msp20I	TGGCCA	2 cut(s)	26, 343
MspCI	CTTAAG	1 cut(s)	829
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	28, 72
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	124, 905, 914
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	5 cut(s)	463, 473, 606, 640, 700
NlaIII	CATG	6 cut(s)	10, 142, 461, 593, 670, 797
NmuCI	GTSAC	3 cut(s)	415, 592, 727
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	797
PciI	ACATGT	1 cut(s)	793
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	901
Ple19I	CGATCG	2 cut(s)	476, 703
Ppu21I	YACGTR	2 cut(s)	245, 256
PscI	ACATGT	1 cut(s)	793
PshAI	GACNNNNGTC	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	820
PvuI	CGATCG	2 cut(s)	476, 703
RsaI	GTAC	3 cut(s)	455, 513, 798
RsaNI	GTAC	3 cut(s)	454, 512, 797
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	189, 210, 294, 830
SatI	GCNGC	1 cut(s)	900
Sau3AI	GATC	5 cut(s)	463, 473, 606, 640, 700
Sau96I	GGNCC	1 cut(s)	820
ScrFI	CCNGG	2 cut(s)	28, 72
SduI	GDGCHC	2 cut(s)	129, 871
SinI	GGWCC	1 cut(s)	820
SmlI	CTYRAG	2 cut(s)	309, 829
SmoI	CTYRAG	2 cut(s)	309, 829
SnaBI	TACGTA	1 cut(s)	256
Sse9I	AATT	5 cut(s)	211, 288, 323, 359, 857
SsiI	CCGC	3 cut(s)	56, 671, 900
SspMI	CTAG	1 cut(s)	854
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	26, 70
TaaI	ACNGT	3 cut(s)	22, 714, 768
TaiI	ACGT	4 cut(s)	108, 247, 258, 681
TaqI	TCGA	6 cut(s)	50, 120, 222, 476, 703, 709
TasI	AATT	5 cut(s)	211, 288, 323, 359, 857
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	4 cut(s)	189, 210, 294, 830
Tru9I	TTAA	4 cut(s)	189, 210, 294, 830
TscAI	CASTG	4 cut(s)	42, 601, 780, 889
TseFI	GTSAC	3 cut(s)	415, 592, 727
Tsp45I	GTSAC	3 cut(s)	415, 592, 727
TspDTI	ATGAA	5 cut(s)	17, 127, 423, 642, 655
TspGWI	ACGGA	3 cut(s)	482, 569, 646
TspRI	CASTG	4 cut(s)	42, 601, 780, 889
Van91I	CCANNNNNTGG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	829
VpaK11BI	GGWCC	1 cut(s)	820
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	2 cut(s)	323, 857
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	1 cut(s)	797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	718
XspI	CTAG	1 cut(s)	854
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.