Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Reverse (-)

4397519 .. 4398743

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCAAACTAGCAGTAGTAGATTTATCCAATGAAGACTGCTTCAAGCCTGGGACAAGTTCTTGGCTCTCAGTACGCAAAGACATTTGCCATGCACTCGAGGATCTTGGCTGCTTCGTGGCAATATTACCCGACAAAATTTCTTCGGAGCTTCGTAGTGCCCACTTCGGTATGTTGGACGAGTTGTTTGATTTCCCAACTGAAACCAAAATGAAAAGTTCTTATGAAAAGCCTTATCCCACTGGCTACCAAAGAGTTGAGGGCGCGGCTTACGAAAGCTTGGGGATTGCTGGTGCTACAAATCCTGAACAAACTCAGATATTCGAACATCATTTTTGGCCCAATGGAAATGATGTATTTCATGAGACTGCTGATTTGTATATAAAAGTGATGGAAGAACTACATCATGCTGTCACGAGAATGGTGTTTGAAAAATATGGTGTAGTGGAGTACCTTGATGATCACCTTCAATCGACAATTCACACATGCCGATTTAGCAAATACAGTGAGCCAGCTGAGAAAACTGGAACTGATATGAGTATCCTCCGTGGTATCCACGGTCATACAGACACAAACTTTACCACCATACTCTATCAAAATGATGTCAAAGGTCTAGAAATAAAGTCAAAGGACGATGAGTGGATAGGTTTTGATCCTCTGCCTTCGTCCTTCATATTTCTAGCAGGTGATGGAGTTCAGGTTTGGAGCAACGACAGAATACGAGCTTGTAGACATCGAGTGAGCTGGAGTGAGAATGATGTACGATACTCAGGCGGATTATTTTCATTCAGGGTAGGGGAAACACATACACCAAAGGAGCTTATAGACGAGGACCACCCCTTACAGTACAAGCCATTGAATACGTCGGTATATACTGAATATAGGAAGAAAAATTACGCCAGCATTGGACCTGACTATACCGTCAAGGCATATTGTGGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

315

Amino Acids

35.79

Weight (kDa)

5.36

Isoelectric Point (pI)

24.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	674
AasI	GACNNNNNNGTC	1 cut(s)	920
Acc36I	ACCTGC	1 cut(s)	674
AccI	GTMKAC	1 cut(s)	730
AccII	CGCG	1 cut(s)	266
AciI	CCGC	2 cut(s)	266, 774
AclWI	GGATC	2 cut(s)	111, 647
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	4 cut(s)	75, 452, 762, 848
AgsI	TTSAA	4 cut(s)	46, 431, 470, 859
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	6 cut(s)	151, 279, 515, 725, 744, 820
AluI	AGCT	6 cut(s)	151, 279, 515, 725, 744, 820
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	111, 647
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	3, 338
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	138
ArsI	GACNNNNNNTTYG	4 cut(s)	170, 202, 358, 390
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	339, 832, 908
AsuHPI	GGTGA	2 cut(s)	455, 698
AsuII	TTCGAA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	832, 908
BaeGI	GKGCMC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	878, 910
BauI	CACGAG	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	385, 683
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	2 cut(s)	551, 563
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	3 cut(s)	11, 614, 680
BfuAI	ACCTGC	1 cut(s)	674
BfuI	GTATCC	2 cut(s)	551, 563
BisI	GCNGC	2 cut(s)	112, 267
BlsI	GCNGC	2 cut(s)	113, 268
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	2 cut(s)	832, 908
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	339, 832, 908
BmrFI	CCNGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	766
Bpu14I	TTCGAA	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	50, 547, 556
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bse1I	ACTGG	2 cut(s)	247, 529
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	50, 547, 556
BseMII	CTCAG	4 cut(s)	84, 329, 507, 783
BseNI	ACTGG	2 cut(s)	247, 529
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	5, 340
BsiHKCI	CYCGRG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	5, 340
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	103, 460, 652
BspACI	CCGC	2 cut(s)	266, 774
BspANI	GGCC	2 cut(s)	5, 340
BspCNI	CTCAG	4 cut(s)	83, 328, 508, 782
BspFNI	CGCG	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	2 cut(s)	111, 647
BspT104I	TTCGAA	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	247, 529
BssECI	CCNNGG	3 cut(s)	50, 547, 556
BssMI	GATC	3 cut(s)	103, 460, 652
BssSI	CACGAG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	4 cut(s)	506, 560, 846, 922
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	513, 901
BstDEI	CTNAG	4 cut(s)	70, 315, 516, 769
BstDSI	CCRYGG	2 cut(s)	547, 556
BstFNI	CGCG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	106, 463, 655
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	3 cut(s)	103, 460, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 495
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	2 cut(s)	551, 563
BsuRI	GGCC	2 cut(s)	5, 340
BtgI	CCRYGG	2 cut(s)	547, 556
BtsIMutI	CAGTG	2 cut(s)	240, 511
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	2 cut(s)	513, 901
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	339, 832, 908
Csp6I	GTAC	4 cut(s)	74, 451, 761, 847
CviAII	CATG	4 cut(s)	92, 362, 407, 486
CviQI	GTAC	4 cut(s)	74, 451, 761, 847
DdeI	CTNAG	4 cut(s)	70, 315, 516, 769
DpnI	GATC	3 cut(s)	105, 462, 654
DpnII	GATC	3 cut(s)	103, 460, 652
DrdI	GACNNNNNNGTC	1 cut(s)	920
DseDI	GACNNNNNNGTC	1 cut(s)	920
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	789
Eco47I	GGWCC	2 cut(s)	832, 908
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	4 cut(s)	95, 365, 410, 489
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	4 cut(s)	91, 361, 406, 485
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	730
Fnu4HI	GCNGC	2 cut(s)	112, 267
Fsp4HI	GCNGC	2 cut(s)	112, 267
FspBI	CTAG	3 cut(s)	11, 614, 680
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	2 cut(s)	112, 267
GsuI	CTGGAG	1 cut(s)	766
HaeIII	GGCC	2 cut(s)	5, 340
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	4 cut(s)	95, 365, 410, 489
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	277
HphI	GGTGA	2 cut(s)	455, 698
Hpy166II	GTNNAC	1 cut(s)	731
Hpy188I	TCNGA	2 cut(s)	148, 318
Hpy188III	TCNNGA	4 cut(s)	305, 362, 415, 614
Hpy8I	GTNNAC	1 cut(s)	731
Hpy99I	CGWCG	1 cut(s)	868
HpyAV	CCTTC	3 cut(s)	476, 672, 679
HpyCH4III	ACNGT	4 cut(s)	506, 560, 846, 922
HpyCH4IV	ACGT	1 cut(s)	863
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 495
HpyF3I	CTNAG	4 cut(s)	70, 315, 516, 769
HpySE526I	ACGT	1 cut(s)	863
Hsp92II	CATG	4 cut(s)	95, 365, 410, 489
HspAI	GCGC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	103, 460, 652
LmnI	GCTCC	3 cut(s)	148, 705, 817
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	3 cut(s)	11, 614, 680
MaeII	ACGT	1 cut(s)	863
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	105, 462, 654
MboI	GATC	3 cut(s)	103, 460, 652
MboII	GAAGA	4 cut(s)	47, 135, 407, 898
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	138, 477, 892
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	94, 253, 554, 666, 823
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	515
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	11, 495
NdeII	GATC	3 cut(s)	103, 460, 652
NlaIII	CATG	4 cut(s)	95, 365, 410, 489
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	489
NspV	TTCGAA	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	674
PkrI	GCNGC	2 cut(s)	113, 268
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspPI	GGNCC	3 cut(s)	339, 832, 908
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	4 cut(s)	75, 452, 762, 848
RsaNI	GTAC	4 cut(s)	74, 451, 761, 847
RseI	CAYNNNNRTG	1 cut(s)	419
SatI	GCNGC	2 cut(s)	112, 267
Sau3AI	GATC	3 cut(s)	103, 460, 652
Sau96I	GGNCC	3 cut(s)	339, 832, 908
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	163
Sfr274I	CTCGAG	1 cut(s)	98
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	2 cut(s)	832, 908
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	138, 477, 892
SsiI	CCGC	2 cut(s)	266, 774
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	3 cut(s)	11, 614, 680
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	4 cut(s)	506, 560, 846, 922
TaiI	ACGT	1 cut(s)	866
TaqI	TCGA	4 cut(s)	99, 324, 473, 736
TasI	AATT	3 cut(s)	138, 477, 892
TatI	WGTACW	1 cut(s)	846
TauI	GCSGC	1 cut(s)	269
TscAI	CASTG	2 cut(s)	247, 511
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	6 cut(s)	48, 227, 240, 350, 661, 774
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	2 cut(s)	247, 511
VpaK11BI	GGWCC	2 cut(s)	832, 908
XapI	RAATTY	1 cut(s)	138
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	1 cut(s)	489
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	730
XspI	CTAG	3 cut(s)	11, 614, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.