Rh2DG007900

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000805
Physical Location & Seq
Forward (+)
461565 .. 462068
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG007900.1

Sequence Viewer

Length: 504 bp
ATGATATTTGAGCACTATGGGGTGGAGAAGTACTGTGACTCTCATATTGGATCCACTGATTATGTTCTTAGACTCCACAAATACAATGCAGCTGACAAGGAGAAAACCCACAAGGCTCTTCCGGAGCACAGTGACTTGAACCTCACTACCATTATTCATCAAAACCATGTGAATGGCTTGGAGGTCAAGACAAAGCATGGTGATCAATGGATTGGCTTTGATGCCTCCCCTAACTCTTTTATATTCATGACTGGGGACGGGTTTCAGGTATGGAGCAATGACAGAATTCAACCTTGTCTGCATAGAGTGATGATGAGCGAAAATGCAGTGAGATACTCGGTTATACTCTCTACATTCCACAATGGGATCATAACTGTGCCCGAGGAGTTGATCGATGACGAACACCCTTTGAAATATAAGCCACTGAGTCATCTTGAATACCTTGTTTCACAACTTGCTCTAACTAACAGCAGGGTTTGTCTTAAGAACTTCTGTGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

167

Amino Acids

19.17

Weight (kDa)

6.15

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 20 - 115 2.4e-18 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 121
AclWI GGATC 3 cut(s) 45, 58, 374
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 1 cut(s) 32
AflII CTTAAG 1 cut(s) 482
AgsI TTSAA 4 cut(s) 139, 290, 412, 437
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw21I GWGCWC 2 cut(s) 15, 129
AlwI GGATC 3 cut(s) 45, 58, 374
Ama87I CYCGRG 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 381
BamHI GGATCC 1 cut(s) 50
Bbv12I GWGCWC 2 cut(s) 15, 129
BbvI GCAGC 1 cut(s) 101
BclI TGATCA 1 cut(s) 202
BfrI CTTAAG 1 cut(s) 482
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmcAI AGTACT 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 52
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 283
BseAI TCCGGA 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 381
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 398
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 393
BsiHKAI GWGCWC 2 cut(s) 15, 129
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 15, 129, 381
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 4 cut(s) 50, 202, 366, 390
BspCNI CTCAG 1 cut(s) 417
BspDI ATCGAT 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 121
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 3 cut(s) 45, 58, 374
BspQI GCTCTTC 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 4 cut(s) 50, 202, 366, 390
Bst4CI ACNGT 3 cut(s) 35, 131, 376
Bst6I CTCTTC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 482
BstDEI CTNAG 2 cut(s) 68, 425
BstKTI GATC 4 cut(s) 53, 205, 369, 393
BstMBI GATC 4 cut(s) 50, 202, 366, 390
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 393
BsuTUI ATCGAT 1 cut(s) 393
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 4 cut(s) 54, 136, 333, 422
CciI TCATGA 1 cut(s) 246
ClaI ATCGAT 1 cut(s) 393
Csp6I GTAC 1 cut(s) 31
CviAII CATG 3 cut(s) 167, 197, 247
CviJI RGCY 5 cut(s) 92, 116, 177, 216, 421
CviKI_1 RGCY 5 cut(s) 92, 116, 177, 216, 421
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 68, 425
DpnI GATC 4 cut(s) 52, 204, 368, 392
DpnII GATC 4 cut(s) 50, 202, 366, 390
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 285
FaeI CATG 3 cut(s) 170, 200, 250
FaqI GGGAC 1 cut(s) 269
FatI CATG 3 cut(s) 166, 196, 246
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
HapII CCGG 1 cut(s) 122
Hin1II CATG 3 cut(s) 170, 200, 250
HinfI GANTC 3 cut(s) 38, 72, 427
HpaII CCGG 1 cut(s) 122
HphI GGTGA 1 cut(s) 212
Hpy188III TCNNGA 4 cut(s) 122, 187, 247, 434
HpyCH4III ACNGT 3 cut(s) 35, 131, 376
HpyCH4V TGCA 3 cut(s) 89, 301, 326
HpyF3I CTNAG 2 cut(s) 68, 425
Hsp92II CATG 3 cut(s) 170, 200, 250
Kpn2I TCCGGA 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 4 cut(s) 50, 202, 366, 390
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 124, 273
LpnPI CCDG 4 cut(s) 135, 237, 251, 457
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 211
MaeIII GTNAC 2 cut(s) 35, 131
MalI GATC 4 cut(s) 52, 204, 368, 392
MboI GATC 4 cut(s) 50, 202, 366, 390
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 3 cut(s) 15, 129, 381
MluCI AATT 1 cut(s) 285
MlyI GAGTC 3 cut(s) 32, 66, 436
MnlI CCTC 4 cut(s) 152, 175, 235, 376
MroI TCCGGA 1 cut(s) 121
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 2 cut(s) 171, 374
MspA1I CMGCKG 1 cut(s) 92
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 1 cut(s) 122
NdeII GATC 4 cut(s) 50, 202, 366, 390
NlaIII CATG 3 cut(s) 170, 200, 250
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 35, 131
PagI TCATGA 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 3 cut(s) 32, 66, 435
PpsI GAGTC 3 cut(s) 32, 66, 435
PspN4I GGNNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 171, 374
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 4 cut(s) 50, 202, 366, 390
ScaI AGTACT 1 cut(s) 32
SchI GAGTC 3 cut(s) 32, 66, 436
SduI GDGCHC 3 cut(s) 15, 129, 381
SetI ASST 6 cut(s) 94, 144, 186, 270, 295, 444
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 2 cut(s) 171, 374
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 1 cut(s) 285
TaaI ACNGT 3 cut(s) 35, 131, 376
TaqI TCGA 1 cut(s) 393
TasI AATT 1 cut(s) 285
TatI WGTACW 1 cut(s) 30
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 4 cut(s) 61, 136, 333, 429
TseFI GTSAC 2 cut(s) 35, 131
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 2 cut(s) 35, 131
TspDTI ATGAA 2 cut(s) 146, 235
TspRI CASTG 4 cut(s) 61, 136, 333, 429
Vha464I CTTAAG 1 cut(s) 482
XapI RAATTY 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.