Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Forward (+)

3407583 .. 3409287

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1028500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGTGTCACAAGTGTTACCCAAACGGTACCCAAAATTCCAGTAGTAGATTTCTCCCAAGAGGGTTGCTTGAAGCCAGGGAGAAGTTCTTGGCTCTCAGTACGTGGGAATGTTTGCCGCGCACTCGAAGAGTTTGGCTGTTTCATGGCAGTCCTGCCCAACAAAGTTTCACCTGAGCTTCAGGACAGCATGTTTGGGACATTAAAAGAGCTGTTTGATTTCCCAATTGAAACTAAAGCACAAACTCCGCAGGAAAAACCTGTAACTGATGGTTATACATCTACGTCTTTCCATGAAAGCTTGGCAGCTGGTACAGACAGTGAAAAATCACGCACATTCGAACATCACTTTTGGCCTAATGGAAATGATCAATATCGCCCTGTGCGATTGCACTTTTTACTCCCCCTCAACGCCGCCTCTGTATCTAGTGAGAGTGCTGATGCGTATACAAAAGTGATGGCAGAACTACATCAAGTGGTGACAAGAATGGTATTCGAAAACTATAATGTAGAAAAATACCATGATGATCACGTCCAATCGATTGTATCCACTCTCCGCTTTATGAAATATAAGAAACCCGAGAAAACCGGAACTGGACAGGGTCTACCCGCGCATACAGACAAGACTTTTACTACCATACTCCACCAAAATCATGTCAAAGGTCTTGAGATATTGTTCATGGCGTGCGAAGGATTTCAGGTTTGGAGCAACGACAGAATATCATCTTGTAAACATAGAGTCAATTTGAACATAAATGAGGTAAGATCCTCGTTTGGACTATTTTCGTACTTGGAAGGGGTGATACGCGCACCAGACGAGCTTACCGCCGAGGACCAACCCCTGAAGTACAAGCCATTGCATATGTTGGATTATGTTCAATTTTTTCTGGACAATCATCGTAATGTTGGAGTTGAGTATTCTGTCAAGGAATATTGCGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

315

Amino Acids

35.69

Weight (kDa)

6.11

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	13 - 126	1.1e-09	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 261	5.7e-08	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AccI	GTMKAC	2 cut(s)	446, 604
AccII	CGCG	3 cut(s)	120, 611, 807
AciI	CCGC	7 cut(s)	118, 248, 414, 556, 609, 825, 936
AclWI	GGATC	1 cut(s)	759
AcsI	RAATTY	2 cut(s)	36, 939
AcuI	CTGAAG	2 cut(s)	164, 863
AfaI	GTAC	5 cut(s)	30, 102, 313, 788, 848
AgsI	TTSAA	4 cut(s)	73, 230, 748, 878
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	5 cut(s)	178, 211, 300, 308, 820
AluI	AGCT	5 cut(s)	178, 211, 300, 308, 820
AlwI	GGATC	1 cut(s)	759
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	2 cut(s)	36, 939
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
Asp700I	GAANNNNTTC	1 cut(s)	693
Asp718I	GGTACC	1 cut(s)	28
AspLEI	GCGC	3 cut(s)	122, 613, 809
AspS9I	GGNCC	1 cut(s)	832
AsuHPI	GGTGA	3 cut(s)	162, 490, 811
AsuII	TTCGAA	2 cut(s)	339, 495
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	832
BanI	GGYRCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	786, 818
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	2 cut(s)	263, 451
BciT130I	CCWGG	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	2 cut(s)	367, 526
BfaI	CTAG	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	3 cut(s)	118, 306, 414
BlsI	GCNGC	3 cut(s)	119, 307, 415
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	832
BmeT110I	CYCGRG	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	832
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu14I	TTCGAA	2 cut(s)	339, 495
BpuEI	CTTGAG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	539
BsaAI	YACGTR	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	77, 828
BsaWI	WCCGGW	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	41, 598
Bse3DI	GCAATG	1 cut(s)	854
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	77, 828
BseJI	GATNNNNATC	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	854
BseMII	CTCAG	2 cut(s)	111, 165
BseNI	ACTGG	2 cut(s)	41, 598
BseXI	GCAGC	1 cut(s)	317
Bsh1236I	CGCG	3 cut(s)	120, 611, 807
BshFI	GGCC	1 cut(s)	355
BshNI	GGYRCC	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	539
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	355
BsoBI	CYCGRG	1 cut(s)	578
Bsp119I	TTCGAA	2 cut(s)	339, 495
Bsp143I	GATC	3 cut(s)	367, 526, 764
BspACI	CCGC	7 cut(s)	118, 248, 414, 556, 609, 825, 936
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	110, 166
BspDI	ATCGAT	1 cut(s)	539
BspFNI	CGCG	3 cut(s)	120, 611, 807
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	759
BspT104I	TTCGAA	2 cut(s)	339, 495
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	854
BsrI	ACTGG	2 cut(s)	41, 598
BssECI	CCNNGG	2 cut(s)	77, 828
BssMI	GATC	3 cut(s)	367, 526, 764
BssNAI	GTATAC	1 cut(s)	447
Bst1107I	GTATAC	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	28, 320
Bst6I	CTCTTC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	104
BstBI	TTCGAA	2 cut(s)	339, 495
BstC8I	GCNNGC	1 cut(s)	685
BstDEI	CTNAG	2 cut(s)	97, 174
BstFNI	CGCG	3 cut(s)	120, 611, 807
BstHHI	GCGC	3 cut(s)	122, 613, 809
BstKTI	GATC	3 cut(s)	370, 529, 767
BstMBI	GATC	3 cut(s)	367, 526, 764
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	76
BstUI	CGCG	3 cut(s)	120, 611, 807
BstV1I	GCAGC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	764
BstYI	RGATCY	1 cut(s)	764
BstZ17I	GTATAC	1 cut(s)	447
Bsu15I	ATCGAT	1 cut(s)	539
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	355
BsuTUI	ATCGAT	1 cut(s)	539
BtrI	CACGTC	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	685
CfoI	GCGC	3 cut(s)	122, 613, 809
Cfr13I	GGNCC	1 cut(s)	832
ClaI	ATCGAT	1 cut(s)	539
Csp6I	GTAC	5 cut(s)	29, 101, 312, 787, 847
CviAII	CATG	6 cut(s)	145, 190, 293, 521, 653, 679
CviQI	GTAC	5 cut(s)	29, 101, 312, 787, 847
DdeI	CTNAG	2 cut(s)	97, 174
DpnI	GATC	3 cut(s)	369, 528, 766
DpnII	GATC	3 cut(s)	367, 526, 764
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	832
Eco57I	CTGAAG	2 cut(s)	164, 863
Eco88I	CYCGRG	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	6 cut(s)	148, 193, 296, 524, 656, 682
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	6 cut(s)	144, 189, 292, 520, 652, 678
FauI	CCCGC	1 cut(s)	616
FauNDI	CATATG	1 cut(s)	861
FbaI	TGATCA	2 cut(s)	367, 526
FblI	GTMKAC	2 cut(s)	446, 604
Fnu4HI	GCNGC	3 cut(s)	118, 306, 414
Fsp4HI	GCNGC	3 cut(s)	118, 306, 414
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	3 cut(s)	121, 612, 808
GluI	GCNGC	3 cut(s)	118, 306, 414
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	1 cut(s)	588
HhaI	GCGC	3 cut(s)	122, 613, 809
Hin1II	CATG	6 cut(s)	148, 193, 296, 524, 656, 682
Hin6I	GCGC	3 cut(s)	120, 611, 807
HinP1I	GCGC	3 cut(s)	120, 611, 807
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	1 cut(s)	738
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	3 cut(s)	162, 490, 811
Hpy166II	GTNNAC	3 cut(s)	447, 605, 731
Hpy188III	TCNNGA	3 cut(s)	182, 665, 887
Hpy8I	GTNNAC	3 cut(s)	447, 605, 731
HpyAV	CCTTC	2 cut(s)	683, 788
HpyCH4III	ACNGT	2 cut(s)	28, 320
HpyCH4IV	ACGT	3 cut(s)	103, 284, 531
HpyCH4V	TGCA	2 cut(s)	391, 859
HpyF3I	CTNAG	2 cut(s)	97, 174
HpySE526I	ACGT	3 cut(s)	103, 284, 531
Hsp92II	CATG	6 cut(s)	148, 193, 296, 524, 656, 682
HspAI	GCGC	3 cut(s)	120, 611, 807
KpnI	GGTACC	1 cut(s)	32
Ksp22I	TGATCA	2 cut(s)	367, 526
Kzo9I	GATC	3 cut(s)	367, 526, 764
LmnI	GCTCC	1 cut(s)	705
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	3 cut(s)	103, 284, 531
MaeIII	GTNAC	4 cut(s)	7, 16, 262, 478
MalI	GATC	3 cut(s)	369, 528, 766
MboI	GATC	3 cut(s)	367, 526, 764
MboII	GAAGA	1 cut(s)	140
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	764
MluCI	AATT	5 cut(s)	36, 225, 742, 878, 939
MlyI	GAGTC	1 cut(s)	747
MmeI	TCCRAC	2 cut(s)	846, 886
MnlI	CCTC	6 cut(s)	55, 416, 427, 751, 778, 823
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	900
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	3 cut(s)	120, 611, 807
NdeI	CATATG	1 cut(s)	861
NdeII	GATC	3 cut(s)	367, 526, 764
NlaIII	CATG	6 cut(s)	148, 193, 296, 524, 656, 682
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	2 cut(s)	7, 478
NspI	RCATGY	1 cut(s)	193
NspV	TTCGAA	2 cut(s)	339, 495
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	693
PflFI	GACNNNGTC	1 cut(s)	600
PkrI	GCNGC	3 cut(s)	119, 307, 415
PleI	GAGTC	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	746
Ppu21I	YACGTR	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	764
PsyI	GACNNNGTC	1 cut(s)	600
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	5 cut(s)	30, 102, 313, 788, 848
RsaNI	GTAC	5 cut(s)	29, 101, 312, 787, 847
RseI	CAYNNNNRTG	1 cut(s)	900
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	3 cut(s)	118, 306, 414
Sau3AI	GATC	3 cut(s)	367, 526, 764
Sau96I	GGNCC	1 cut(s)	832
SchI	GAGTC	1 cut(s)	747
ScrFI	CCNGG	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	430
SfuI	TTCGAA	2 cut(s)	339, 495
SinI	GGWCC	1 cut(s)	832
SmiMI	CAYNNNNRTG	1 cut(s)	900
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	5 cut(s)	36, 225, 742, 878, 939
SsiI	CCGC	7 cut(s)	118, 248, 414, 556, 609, 825, 936
SspI	AATATT	1 cut(s)	932
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	28, 320
TaiI	ACGT	3 cut(s)	106, 287, 534
TaqI	TCGA	4 cut(s)	126, 339, 495, 539
TasI	AATT	5 cut(s)	36, 225, 742, 878, 939
TatI	WGTACW	1 cut(s)	846
TauI	GCSGC	2 cut(s)	120, 416
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	7, 478
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	2 cut(s)	7, 478
TspDTI	ATGAA	4 cut(s)	133, 309, 578, 667
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	2 cut(s)	36, 939
XceI	RCATGY	1 cut(s)	193
XmiI	GTMKAC	2 cut(s)	446, 604
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.