Rw2G015620

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000805
Physical Location & Seq
Reverse (-)
18254956 .. 18256322
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G015620.1

Sequence Viewer

Length: 918 bp
ATGACCCAGATTCCAGTGGTAGATTTCTCAGATCCCGAGTGCTTGAAGCCAGGGACAAGTTCATGGCTCTCGGCACGCAATCAAGTTTGCAATGCACTCGAGGATCAGTTTGGCTGTTTTATAGCGATACTGTCCAACAAAGTTACCTTGGAACTTCACAACACCGTCTTTGGTGCCATGAACGAGTTGTTTGAATCCCCAGACGGCATCAAAGATCAGAACAAGTACGAAAAATGGCCTTTCTGTGGCCATTTCAAGTCGAATTCTGTCCTTGAACGCTTGGGGATTTATGATCCTACAAACCCAGAAGAAATTCACAACTTTTCACGTCTTTTTTGGCCTACTGGAAATGATCAATTTTGTGATGGTGTCCATTTGTACGCAAAAGTGATGAAAGAACTAGATCAAGCTGTGACGAGAATGGTATTCGAAAACTATGGTGTAGAGAAGCACCATGATGACCACATTGAATCCAGTTTTTACTGCTTTCAATTTTCAAAATACGCGGAGCCTAAAATATCTGGAAGTAATGTGGGTATAGTGAGTCATACAGATAAGAACTTCACCTCCATACTCCATCAAAACCAGATCAATGGCCTCGAGATTTATACAAAGGATGGCGAGTGGATAGGTTTCGATCCTCATATATCCTCTACCTTCATCCTTCATATTCATAGCAACAATGACAGAATAAGAGCTTGTAAACACAGGGTCAACCTGATTCACTCAGATAAGATAAGATACTCGTTTGGGCTCTTCTCACTCAAACGAGGAGTAACAACCGTACCGGAGGAGCTGGTGGACAAGGATCACCCTTTAAAGTATAAGCCGTTGAATCAGGTTGAGTATATTCAAGCGCAGGGCTACAAAGATGGTGAAGGACATGAGTGTAAGCTCAAGGCATTCTGTGGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

305

Amino Acids

34.97

Weight (kDa)

5.96

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 167 - 253 8.8e-11 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccII CGCG 1 cut(s) 506
AciI CCGC 1 cut(s) 506
AclWI GGATC 5 cut(s) 26, 111, 287, 632, 816
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 262, 312
AfaI GTAC 3 cut(s) 227, 380, 786
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 9 cut(s) 46, 194, 256, 275, 470, 491, 498, 835, 854
AjiI CACGTC 1 cut(s) 329
AjnI CCWGG 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 551, 583
AluBI AGCT 4 cut(s) 410, 698, 796, 895
AluI AGCT 4 cut(s) 410, 698, 796, 895
AlwI GGATC 5 cut(s) 26, 111, 287, 632, 816
Ama87I CYCGRG 3 cut(s) 35, 98, 599
AoxI GGCC 4 cut(s) 236, 247, 338, 595
ApoI RAATTY 2 cut(s) 262, 312
Asp700I GAANNNNTTC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 859
AsuHPI GGTGA 3 cut(s) 556, 803, 887
AsuII TTCGAA 1 cut(s) 429
AvaI CYCGRG 3 cut(s) 35, 98, 599
BaeI ACNNNNGTAYC 2 cut(s) 768, 801
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 756
BccI CCATC 4 cut(s) 359, 585, 611, 866
BceAI ACGGC 2 cut(s) 220, 814
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 1 cut(s) 352
BfaI CTAG 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 51
BmeT110I CYCGRG 3 cut(s) 35, 98, 599
BmgBI CACGTC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 175, 510
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 881
BsaJI CCNNGG 2 cut(s) 50, 147
BsaWI WCCGGW 1 cut(s) 787
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 3 cut(s) 14, 349, 474
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 50, 147
BseGI GGATG 2 cut(s) 622, 660
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 42, 741
BseNI ACTGG 3 cut(s) 14, 349, 474
BseRI GAGGAG 2 cut(s) 786, 806
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 4 cut(s) 238, 249, 340, 597
BshNI GGYRCC 1 cut(s) 173
BsiHKCI CYCGRG 3 cut(s) 35, 98, 599
BsiSI CCGG 1 cut(s) 788
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 902
BsnI GGCC 4 cut(s) 238, 249, 340, 597
BsoBI CYCGRG 3 cut(s) 35, 98, 599
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 756
Bsp143I GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 808
BspACI CCGC 1 cut(s) 506
BspANI GGCC 4 cut(s) 238, 249, 340, 597
BspCNI CTCAG 2 cut(s) 41, 740
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 2 cut(s) 175, 510
BspPI GGATC 5 cut(s) 26, 111, 287, 632, 816
BspQI GCTCTTC 1 cut(s) 761
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 3 cut(s) 14, 349, 474
BssECI CCNNGG 2 cut(s) 50, 147
BssMI GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 808
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 132, 166, 784
Bst6I CTCTTC 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 28, 727
BstF5I GGATG 2 cut(s) 622, 660
BstFNI CGCG 1 cut(s) 506
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 9 cut(s) 34, 106, 217, 295, 355, 406, 591, 640, 811
BstMBI GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 808
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstUI CGCG 1 cut(s) 506
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 4 cut(s) 238, 249, 340, 597
BtrI CACGTC 1 cut(s) 329
BtsCI GGATG 2 cut(s) 622, 660
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 859
Csp6I GTAC 3 cut(s) 226, 379, 785
CviAII CATG 4 cut(s) 63, 178, 455, 884
CviQI GTAC 3 cut(s) 226, 379, 785
DdeI CTNAG 2 cut(s) 28, 727
DpnI GATC 9 cut(s) 33, 105, 216, 294, 354, 405, 590, 639, 810
DpnII GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 808
DraI TTTAAA 1 cut(s) 819
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 756
Eco88I CYCGRG 3 cut(s) 35, 98, 599
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 66, 181, 458, 887
FaqI GGGAC 1 cut(s) 67
FatI CATG 4 cut(s) 62, 177, 454, 883
FbaI TGATCA 1 cut(s) 352
FokI GGATG 2 cut(s) 629, 647
FriOI GRGCYC 1 cut(s) 756
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 858
HaeIII GGCC 4 cut(s) 238, 249, 340, 597
HapII CCGG 1 cut(s) 788
HhaI GCGC 1 cut(s) 859
Hin1II CATG 4 cut(s) 66, 181, 458, 887
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HinfI GANTC 6 cut(s) 10, 194, 470, 544, 721, 835
HpaII CCGG 1 cut(s) 788
HphI GGTGA 3 cut(s) 556, 803, 887
Hpy166II GTNNAC 3 cut(s) 704, 715, 802
Hpy188I TCNGA 3 cut(s) 31, 219, 730
Hpy188III TCNNGA 3 cut(s) 35, 522, 601
Hpy8I GTNNAC 3 cut(s) 704, 715, 802
HpyAV CCTTC 3 cut(s) 667, 674, 872
HpyCH4III ACNGT 3 cut(s) 132, 166, 784
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 90, 95
HpyF3I CTNAG 2 cut(s) 28, 727
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 4 cut(s) 66, 181, 458, 887
HspAI GCGC 1 cut(s) 857
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 808
LguI GCTCTTC 1 cut(s) 761
LmnI GCTCC 2 cut(s) 508, 793
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 3 cut(s) 142, 412, 775
MalI GATC 9 cut(s) 33, 105, 216, 294, 354, 405, 590, 639, 810
MboI GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 808
MboII GAAGA 2 cut(s) 320, 748
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 756
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 4 cut(s) 262, 312, 356, 491
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 7 cut(s) 94, 577, 608, 651, 661, 764, 784
Mox20I TGGCCA 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 818
MslI CAYNNNNRTG 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 788
MspR9I CCNGG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 902
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 506
NdeII GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 808
NlaIII CATG 4 cut(s) 66, 181, 458, 887
NlaIV GGNNCC 2 cut(s) 175, 510
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 412
NspV TTCGAA 1 cut(s) 429
PaeR7I CTCGAG 2 cut(s) 98, 599
PciSI GCTCTTC 1 cut(s) 761
PctI GAATGC 1 cut(s) 902
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 5 cut(s) 10, 194, 470, 721, 835
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 175, 510
PspXI VCTCGAGB 1 cut(s) 98
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 3 cut(s) 227, 380, 786
RsaNI GTAC 3 cut(s) 226, 379, 785
RseI CAYNNNNRTG 1 cut(s) 456
SapI GCTCTTC 1 cut(s) 761
SaqAI TTAA 1 cut(s) 818
Sau3AI GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 808
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 756
SfaNI GCATC 1 cut(s) 216
Sfr274I CTCGAG 2 cut(s) 98, 599
SfuI TTCGAA 1 cut(s) 429
SlaI CTCGAG 2 cut(s) 98, 599
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 3 cut(s) 98, 599, 896
SmoI CTYRAG 3 cut(s) 98, 599, 896
Sse9I AATT 4 cut(s) 262, 312, 356, 491
SsiI CCGC 1 cut(s) 506
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 132, 166, 784
TaiI ACGT 1 cut(s) 331
TaqI TCGA 5 cut(s) 99, 260, 429, 600, 636
TasI AATT 4 cut(s) 262, 312, 356, 491
TfiI GAWTC 5 cut(s) 10, 194, 470, 721, 835
Tru1I TTAA 1 cut(s) 818
Tru9I TTAA 1 cut(s) 818
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 6 cut(s) 51, 194, 407, 649, 656, 662
TspRI CASTG 1 cut(s) 21
XapI RAATTY 2 cut(s) 262, 312
XhoI CTCGAG 2 cut(s) 98, 599
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.