pycom09g10550

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000805
Physical Location & Seq
Forward (+)
8627484 .. 8628838
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10550.4

Sequence Viewer

Length: 1050 bp
ATGTATTATTATTGTCCGTTGCCATTATACAACAGTACTCAACGTAGTGAGAAGAATAATCCATTAGATCCCTCAAAACCTTGCAGCCAATCAGAAGAAAAGGTACAAAAGGGTTGCATGGGTACCAGGCATGGATTTCTTCCGGTGATAGATTTCTCCAAAGAGGACTGCTTGAAGCCAGGGACAAGTTATTGGCTCTCCGTCCGCCGGCAGGTTGGCCGTGCACTGGAAGAGCTCGGTGGTTTCATGGCAATAATGCCCGACAAAGTTTCTGCTGAGCTCCGCCAAACCATCTTTGGTGCACTGAAGGACTTGTTTGAGTTCCCTGCCGAACTCAAAGCCAAAAACCGATACGAAGAGAATCCATTCTGTGGCCATTTCATATATAATTCTGCTCATGAGAGCTTGGGGATTCAGAATCCCACACACCCAGAAGAAACTCGGAAATTTACACATCTTTTCTGGCCTAACCAAAATGATCGATCCCGTGATAGTGTAGATTCATATGCAAAGGTGATGATGGAGCTTGATCATGTTGTAACAAGAATGGTATTCGAAAACTACGGTATGGAGAAGTACCACGACGAACACATTCGATCTACTTCTCACTTTATCCAGTTTGCTAAATACAAAGAACCCAGAAAAGCTGGAAGCGATGTGGGTTTAGCGAGTCACACTGACAAGAACTTCAACACAATTCTTCATCAAAATCATGTCAACGGTCTGGAGATAAACACGGACGATGACAAGTGGATAATGTTCGATCCACATCTACCTTCATCCTTCCTTTTCATAGCTAGTGATGTGTTTAAGGTATGGAGTAACGACAGAATACGGGCTTGTAGACATAGAGTCAACGTAAGAGAAAATGATGAGGCAAGATACTCGGTTGGATTTTTCTCTCTAAAGATAGGGGTAACAACTATACCCATGGAGCTTGTGGACGAAGAACACCCCTTACGTTACAAGTCACTAGACCAAGTGGAGTATATCGAAGCACAAAGGAAAAATGGAATTGAGTGCACACCGGAGGCATTCTGCGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

350

Amino Acids

40.48

Weight (kDa)

6.12

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 371
AccI GTMKAC 1 cut(s) 844
AciI CCGC 3 cut(s) 205, 283, 1041
AclWI GGATC 3 cut(s) 62, 477, 758
AcoI YGGCCR 2 cut(s) 217, 373
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 4 cut(s) 37, 105, 124, 578
AfiI CCNNNNNNNGG 4 cut(s) 207, 211, 226, 371
AgsI TTSAA 2 cut(s) 175, 691
AhdI GACNNNNNGTC 1 cut(s) 851
AjnI CCWGG 2 cut(s) 125, 178
AluBI AGCT 7 cut(s) 235, 280, 405, 526, 647, 797, 937
AluI AGCT 7 cut(s) 235, 280, 405, 526, 647, 797, 937
Alw21I GWGCWC 5 cut(s) 226, 237, 282, 304, 1025
Alw44I GTGCAC 3 cut(s) 222, 300, 1021
AlwI GGATC 3 cut(s) 62, 477, 758
AoxI GGCC 3 cut(s) 217, 373, 464
ApaLI GTGCAC 3 cut(s) 222, 300, 1021
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 2 cut(s) 365, 591
Asp718I GGTACC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 157, 526
AsuII TTCGAA 1 cut(s) 555
BaeGI GKGCMC 3 cut(s) 226, 304, 1025
BalI TGGCCA 1 cut(s) 375
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 2 cut(s) 237, 282
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
Bbv12I GWGCWC 5 cut(s) 226, 237, 282, 304, 1025
BbvI GCAGC 1 cut(s) 96
BccI CCATC 2 cut(s) 299, 514
BceAI ACGGC 1 cut(s) 204
BcgI CGANNNNNNTGC 2 cut(s) 867, 901
BciT130I CCWGG 2 cut(s) 127, 180
BclI TGATCA 1 cut(s) 529
BfaI CTAG 2 cut(s) 798, 974
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 85
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 86
BmcAI AGTACT 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 127, 180
BmeRI GACNNNNNGTC 1 cut(s) 851
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 127, 180
BpmI CTGGAG 1 cut(s) 746
Bpu1102I GCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 555
Bsa29I ATCGAT 1 cut(s) 481
BsaBI GATNNNNATC 1 cut(s) 768
BsaJI CCNNGG 2 cut(s) 179, 930
BsaWI WCCGGW 2 cut(s) 142, 1027
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 211, 226, 371
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 231, 616
Bse8I GATNNNNATC 1 cut(s) 768
BseBI CCWGG 2 cut(s) 127, 180
BseCI ATCGAT 1 cut(s) 481
BseDI CCNNGG 2 cut(s) 179, 930
BseGI GGATG 1 cut(s) 779
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 4 cut(s) 207, 211, 226, 371
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 231, 616
BseSI GKGCMC 3 cut(s) 226, 304, 1025
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 3 cut(s) 219, 375, 466
BshNI GGYRCC 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 481
BsiHKAI GWGCWC 5 cut(s) 226, 237, 282, 304, 1025
BsiSI CCGG 3 cut(s) 143, 208, 1028
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 4 cut(s) 207, 211, 226, 371
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 1034
BsnI GGCC 3 cut(s) 219, 375, 466
Bsp119I TTCGAA 1 cut(s) 555
Bsp1286I GDGCHC 5 cut(s) 226, 237, 282, 304, 1025
Bsp143I GATC 6 cut(s) 67, 478, 482, 529, 596, 763
Bsp1720I GCTNAGC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 3 cut(s) 205, 283, 1041
BspANI GGCC 3 cut(s) 219, 375, 466
BspCNI CTCAG 1 cut(s) 268
BspDI ATCGAT 1 cut(s) 481
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 124
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 3 cut(s) 62, 477, 758
BspQI GCTCTTC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 555
BspT107I GGYRCC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 2 cut(s) 231, 616
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 2 cut(s) 179, 930
BssMI GATC 6 cut(s) 67, 478, 482, 529, 596, 763
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 2 cut(s) 127, 180
Bst4CI ACNGT 3 cut(s) 35, 566, 722
Bst6I CTCTTC 2 cut(s) 225, 351
BstBI TTCGAA 1 cut(s) 555
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 276
BstDSI CCRYGG 1 cut(s) 930
BstF5I GGATG 1 cut(s) 779
BstKTI GATC 6 cut(s) 70, 481, 485, 532, 599, 766
BstMBI GATC 6 cut(s) 67, 478, 482, 529, 596, 763
BstNI CCWGG 2 cut(s) 127, 180
BstSCI CCNGG 2 cut(s) 125, 178
BstSLI GKGCMC 3 cut(s) 226, 304, 1025
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 481
BsuRI GGCC 3 cut(s) 219, 375, 466
BsuTUI ATCGAT 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 930
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 1 cut(s) 779
BtsIMutI CAGTG 3 cut(s) 224, 302, 675
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 209
CciI TCATGA 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 481
Csp6I GTAC 4 cut(s) 36, 104, 123, 577
CviAII CATG 7 cut(s) 118, 131, 247, 398, 533, 713, 931
CviQI GTAC 4 cut(s) 36, 104, 123, 577
DdeI CTNAG 1 cut(s) 276
DpnI GATC 6 cut(s) 69, 480, 484, 531, 598, 765
DpnII GATC 6 cut(s) 67, 478, 482, 529, 596, 763
DriI GACNNNNNGTC 1 cut(s) 851
EaeI YGGCCR 2 cut(s) 217, 373
Eam1104I CTCTTC 2 cut(s) 225, 351
Eam1105I GACNNNNNGTC 1 cut(s) 851
EarI CTCTTC 2 cut(s) 225, 351
EciI GGCGGA 2 cut(s) 194, 272
Ecl136II GAGCTC 2 cut(s) 235, 280
Eco130I CCWWGG 1 cut(s) 930
Eco24I GRGCYC 2 cut(s) 237, 282
Eco53kI GAGCTC 2 cut(s) 235, 280
Eco57I CTGAAG 1 cut(s) 326
EcoICRI GAGCTC 2 cut(s) 235, 280
EcoRII CCWGG 2 cut(s) 125, 178
EcoT14I CCWWGG 1 cut(s) 930
EcoT38I GRGCYC 2 cut(s) 237, 282
ErhI CCWWGG 1 cut(s) 930
FaeI CATG 7 cut(s) 121, 134, 250, 401, 536, 716, 934
FaqI GGGAC 1 cut(s) 196
FatI CATG 7 cut(s) 117, 130, 246, 397, 532, 712, 930
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 844
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 766
FriOI GRGCYC 2 cut(s) 237, 282
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 2 cut(s) 798, 974
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 746
HaeIII GGCC 3 cut(s) 219, 375, 466
HapII CCGG 3 cut(s) 143, 208, 1028
Hin1II CATG 7 cut(s) 121, 134, 250, 401, 536, 716, 934
HincII GTYRAC 2 cut(s) 718, 856
HindII GTYRAC 2 cut(s) 718, 856
HinfI GANTC 6 cut(s) 361, 412, 418, 500, 670, 852
HpaII CCGG 3 cut(s) 143, 208, 1028
HphI GGTGA 2 cut(s) 157, 526
Hpy166II GTNNAC 7 cut(s) 224, 302, 718, 845, 856, 943, 1023
Hpy188I TCNGA 3 cut(s) 94, 417, 444
Hpy188III TCNNGA 2 cut(s) 398, 725
Hpy8I GTNNAC 7 cut(s) 224, 302, 718, 845, 856, 943, 1023
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 3 cut(s) 301, 786, 793
HpyCH4III ACNGT 3 cut(s) 35, 566, 722
HpyCH4IV ACGT 3 cut(s) 43, 858, 961
HpyCH4V TGCA 6 cut(s) 84, 117, 224, 302, 509, 1023
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 3 cut(s) 43, 858, 961
Hsp92II CATG 7 cut(s) 121, 134, 250, 401, 536, 716, 934
KpnI GGTACC 1 cut(s) 126
KroI GCCGGC 1 cut(s) 207
KroNI GCCGGC 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 6 cut(s) 67, 478, 482, 529, 596, 763
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 3 cut(s) 285, 523, 934
Lsp1109I GCAGC 1 cut(s) 96
MaeI CTAG 2 cut(s) 798, 974
MaeII ACGT 3 cut(s) 43, 858, 961
MaeIII GTNAC 6 cut(s) 538, 671, 821, 916, 962, 969
MalI GATC 6 cut(s) 69, 480, 484, 531, 598, 765
MboI GATC 6 cut(s) 67, 478, 482, 529, 596, 763
MboII GAAGA 8 cut(s) 64, 107, 131, 242, 368, 446, 692, 959
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 5 cut(s) 226, 237, 282, 304, 1025
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 4 cut(s) 388, 446, 696, 1014
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 2 cut(s) 679, 861
MmeI TCCRAC 1 cut(s) 871
MnlI CCTC 4 cut(s) 82, 157, 868, 1024
Mox20I TGGCCA 1 cut(s) 375
MroNI GCCGGC 1 cut(s) 207
MroXI GAANNNNTTC 2 cut(s) 365, 591
MscI TGGCCA 1 cut(s) 375
MseI TTAA 1 cut(s) 810
Msp20I TGGCCA 1 cut(s) 375
MspI CCGG 3 cut(s) 143, 208, 1028
MspR9I CCNGG 2 cut(s) 127, 180
Mva1269I GAATGC 1 cut(s) 1034
MvaI CCWGG 2 cut(s) 127, 180
NaeI GCCGGC 1 cut(s) 209
NcoI CCATGG 1 cut(s) 930
NdeI CATATG 1 cut(s) 505
NdeII GATC 6 cut(s) 67, 478, 482, 529, 596, 763
NgoMIV GCCGGC 1 cut(s) 207
NlaIII CATG 7 cut(s) 121, 134, 250, 401, 536, 716, 934
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 671, 969
NspV TTCGAA 1 cut(s) 555
PagI TCATGA 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 225
PctI GAATGC 1 cut(s) 1034
PdiI GCCGGC 1 cut(s) 209
PdmI GAANNNNTTC 2 cut(s) 365, 591
PfeI GAWTC 4 cut(s) 361, 412, 418, 500
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 2 cut(s) 678, 860
PpsI GAGTC 2 cut(s) 678, 860
Psp124BI GAGCTC 2 cut(s) 237, 282
Psp6I CCWGG 2 cut(s) 125, 178
PspGI CCWGG 2 cut(s) 125, 178
PspN4I GGNNCC 1 cut(s) 124
PsrI GAACNNNNNNTAC 2 cut(s) 942, 974
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 4 cut(s) 37, 105, 124, 578
RsaNI GTAC 4 cut(s) 36, 104, 123, 577
SacI GAGCTC 2 cut(s) 237, 282
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 810
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 6 cut(s) 67, 478, 482, 529, 596, 763
ScaI AGTACT 1 cut(s) 37
SchI GAGTC 2 cut(s) 679, 861
ScrFI CCNGG 2 cut(s) 127, 180
SduI GDGCHC 5 cut(s) 226, 237, 282, 304, 1025
SfuI TTCGAA 1 cut(s) 555
Sse9I AATT 4 cut(s) 388, 446, 696, 1014
SsiI CCGC 3 cut(s) 205, 283, 1041
SspMI CTAG 2 cut(s) 798, 974
SstI GAGCTC 2 cut(s) 237, 282
StyD4I CCNGG 2 cut(s) 125, 178
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 3 cut(s) 35, 566, 722
TaiI ACGT 3 cut(s) 46, 861, 964
TaqI TCGA 5 cut(s) 481, 555, 595, 762, 993
TasI AATT 4 cut(s) 388, 446, 696, 1014
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 4 cut(s) 361, 412, 418, 500
Tru1I TTAA 1 cut(s) 810
Tru9I TTAA 1 cut(s) 810
TscAI CASTG 3 cut(s) 231, 309, 682
TseFI GTSAC 2 cut(s) 671, 969
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 2 cut(s) 671, 969
TspDTI ATGAA 6 cut(s) 235, 370, 492, 692, 768, 781
TspGWI ACGGA 3 cut(s) 6, 190, 752
TspRI CASTG 3 cut(s) 231, 309, 682
Van91I CCANNNNNTGG 1 cut(s) 371
VneI GTGCAC 3 cut(s) 222, 300, 1021
XapI RAATTY 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 2 cut(s) 293, 937
XmiI GTMKAC 1 cut(s) 844
XmnI GAANNNNTTC 2 cut(s) 365, 591
XspI CTAG 2 cut(s) 798, 974
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.