Rw0G010850

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00466
OG0000805
Physical Location & Seq
Reverse (-)
34429 .. 35726
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010850.1

Sequence Viewer

Length: 618 bp
ATGGCTCTCGGCACGCAATCAAGTTTGCAATGCACTCGAGGATCAGTTTGGCTGTTTTATAGCGATACTGTCAACAAAGTTACCTTGGAACTTCACAACACCGTCTTTGGTGCCATGAACGAGTTGTTTGAATCCCCAGACGGCATCAAAGATCAGAACAATGATGGTGTCCATTTGTACGCAAAAGTGATGAAAGAACTAGATCAAGCTGTGACGAGAATGGTATTCGAAAACTATGGTGTAGAGAAGCACCATGATGACCACATTGAATCCAGTTTTTACTGCTTTCAATTTTCAAAATACGCGGAGCCTAAAATATCTGGAAGTAATGTGGGTATAGTGAGTCATACAGATAAGAACTTCACCTCCATACTCCATCAAAACCAGATCAATGGCCTCGAGATTTATACAAAGGATGGCGAGTGGATAGATAAGATAAGATACTCGTTTGGGCTCTTCTCACTCAAACGAGGAGTAACAACCGTACCGGAGGAGCTGGTGGACAAGGATCACCCTTTAAAGTATAAGCCGTTGAATCAGGTTGAGTATATTCAAGCGCAGGGCTACAAAGATGGTGAAGGACATGAGTGTAAGCTCAAGGCATTCTGTGGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

205

Amino Acids

23.36

Weight (kDa)

5.69

Isoelectric Point (pI)

24.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccII CGCG 1 cut(s) 305
AciI CCGC 1 cut(s) 305
AclWI GGATC 2 cut(s) 49, 516
AfaI GTAC 2 cut(s) 179, 486
AgsI TTSAA 6 cut(s) 131, 269, 290, 297, 535, 554
AloI GAACNNNNNNTCC 2 cut(s) 350, 382
AluBI AGCT 3 cut(s) 209, 496, 595
AluI AGCT 3 cut(s) 209, 496, 595
AlwI GGATC 2 cut(s) 49, 516
Ama87I CYCGRG 2 cut(s) 36, 398
AoxI GGCC 1 cut(s) 394
AspLEI GCGC 1 cut(s) 559
AsuHPI GGTGA 3 cut(s) 355, 503, 587
AsuII TTCGAA 1 cut(s) 228
AvaI CYCGRG 2 cut(s) 36, 398
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 456
BccI CCATC 4 cut(s) 158, 384, 410, 566
BceAI ACGGC 2 cut(s) 157, 514
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BfaI CTAG 1 cut(s) 200
BmeT110I CYCGRG 2 cut(s) 36, 398
BmiI GGNNCC 2 cut(s) 112, 309
BmsI GCATC 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bse1I ACTGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 2 cut(s) 486, 506
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 110
BsiHKCI CYCGRG 2 cut(s) 36, 398
BsiSI CCGG 1 cut(s) 488
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 1 cut(s) 396
BsoBI CYCGRG 2 cut(s) 36, 398
Bsp119I TTCGAA 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 5 cut(s) 41, 151, 202, 387, 508
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 396
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 112, 309
BspPI GGATC 2 cut(s) 49, 516
BspQI GCTCTTC 1 cut(s) 461
BspT104I TTCGAA 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 5 cut(s) 41, 151, 202, 387, 508
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 70, 103, 484
Bst6I CTCTTC 1 cut(s) 461
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 14
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 5 cut(s) 44, 154, 205, 390, 511
BstMBI GATC 5 cut(s) 41, 151, 202, 387, 508
BstUI CGCG 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 392
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 14
CfoI GCGC 1 cut(s) 559
Csp6I GTAC 2 cut(s) 178, 485
CviAII CATG 3 cut(s) 115, 254, 584
CviQI GTAC 2 cut(s) 178, 485
DpnI GATC 5 cut(s) 43, 153, 204, 389, 510
DpnII GATC 5 cut(s) 41, 151, 202, 387, 508
DraI TTTAAA 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 456
Eco88I CYCGRG 2 cut(s) 36, 398
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 3 cut(s) 118, 257, 587
FatI CATG 3 cut(s) 114, 253, 583
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 456
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 558
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 488
HhaI GCGC 1 cut(s) 559
Hin1II CATG 3 cut(s) 118, 257, 587
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 4 cut(s) 131, 269, 343, 535
HpaII CCGG 1 cut(s) 488
HphI GGTGA 3 cut(s) 355, 503, 587
Hpy166II GTNNAC 2 cut(s) 73, 502
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 321, 400
Hpy8I GTNNAC 2 cut(s) 73, 502
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 3 cut(s) 70, 103, 484
HpyCH4V TGCA 2 cut(s) 28, 33
Hsp92II CATG 3 cut(s) 118, 257, 587
HspAI GCGC 1 cut(s) 557
Kzo9I GATC 5 cut(s) 41, 151, 202, 387, 508
LguI GCTCTTC 1 cut(s) 461
LmnI GCTCC 2 cut(s) 307, 493
LpnPI CCDG 8 cut(s) 150, 286, 306, 398, 482, 501, 524, 545
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 3 cut(s) 79, 211, 475
MalI GATC 5 cut(s) 43, 153, 204, 389, 510
MboI GATC 5 cut(s) 41, 151, 202, 387, 508
MboII GAAGA 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 1 cut(s) 290
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 5 cut(s) 32, 376, 407, 464, 484
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 602
MvnI CGCG 1 cut(s) 305
NdeII GATC 5 cut(s) 41, 151, 202, 387, 508
NlaIII CATG 3 cut(s) 118, 257, 587
NlaIV GGNNCC 2 cut(s) 112, 309
NmuCI GTSAC 1 cut(s) 211
NspV TTCGAA 1 cut(s) 228
PaeR7I CTCGAG 2 cut(s) 36, 398
PciSI GCTCTTC 1 cut(s) 461
PctI GAATGC 1 cut(s) 602
PfeI GAWTC 3 cut(s) 131, 269, 535
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 112, 309
PspXI VCTCGAGB 1 cut(s) 36
RsaI GTAC 2 cut(s) 179, 486
RsaNI GTAC 2 cut(s) 178, 485
RseI CAYNNNNRTG 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 461
SaqAI TTAA 1 cut(s) 518
Sau3AI GATC 5 cut(s) 41, 151, 202, 387, 508
SchI GAGTC 1 cut(s) 352
SduI GDGCHC 1 cut(s) 456
SetI ASST 6 cut(s) 86, 211, 368, 498, 543, 597
SfaNI GCATC 1 cut(s) 153
Sfr274I CTCGAG 2 cut(s) 36, 398
SfuI TTCGAA 1 cut(s) 228
SlaI CTCGAG 2 cut(s) 36, 398
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 3 cut(s) 36, 398, 596
SmoI CTYRAG 3 cut(s) 36, 398, 596
Sse9I AATT 1 cut(s) 290
SsiI CCGC 1 cut(s) 305
SspMI CTAG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 70, 103, 484
TaqI TCGA 3 cut(s) 37, 228, 399
TasI AATT 1 cut(s) 290
TfiI GAWTC 3 cut(s) 131, 269, 535
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 131, 206
XhoI CTCGAG 2 cut(s) 36, 398
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.