pycom11g24320

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000805
Physical Location & Seq
Forward (+)
27262221 .. 27263028
808 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g24320.2

Sequence Viewer

Length: 402 bp
ATGACCATGAGCACCCAAGCAGCAGCGGCCAAAATTCCAGTGGTAGATTTCTCCATGGACGGCATGAAGCCCGGGACAAGTTCTTGGTTCTCAATACGTGATGACGTTTGCCATGCACTTGAAGAGCTTGGCTGTTTCATAGCAATCCTGCCCAACAAACTTCCTTTGGAGGAGCTCCACAACTCCTTTGTTGGTGCATTGAAAGAGTTGTTAGATTTCCCTATGGACGTCAAAGTGCGAGACAAAAAAGGGGCCTATTTATCTATCCATCCTGCCCATGAAGGCTTGGGGGTGCTTAATAACACCTCTGAAGAAATTCAGAAGTTCACTCGTCATTTTTGGCCTAATGGAAACGATCTTTTTTGGGTGCACTTGAGTATGCAAAAGCGATGGAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

134

Amino Acids

15.08

Weight (kDa)

6.28

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AciI CCGC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 2 cut(s) 33, 315
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 228
AgsI TTSAA 2 cut(s) 122, 202
AluBI AGCT 2 cut(s) 127, 175
AluI AGCT 2 cut(s) 127, 175
Alw21I GWGCWC 3 cut(s) 14, 177, 372
Alw26I GTCTC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 3 cut(s) 27, 252, 341
ApaLI GTGCAC 1 cut(s) 368
ApeKI GCWGC 2 cut(s) 20, 23
ApoI RAATTY 2 cut(s) 33, 315
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 2 cut(s) 72, 73
AvaI CYCGRG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 3 cut(s) 14, 177, 372
BbvI GCAGC 2 cut(s) 32, 35
BccI CCATC 2 cut(s) 276, 384
BceAI ACGGC 1 cut(s) 76
BcnI CCSGG 2 cut(s) 72, 73
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 400
BisI GCNGC 3 cut(s) 21, 24, 27
BlsI GCNGC 3 cut(s) 22, 25, 28
Bme1390I CCNGG 2 cut(s) 72, 73
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 72, 73
BpuEI CTTGAG 1 cut(s) 394
BpuMI CCSGG 2 cut(s) 72, 73
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 54, 71
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 54, 71
BseGI GGATG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 2 cut(s) 32, 35
BshFI GGCC 3 cut(s) 29, 254, 343
BsiHKAI GWGCWC 3 cut(s) 14, 177, 372
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 3 cut(s) 29, 254, 343
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 14, 177, 372
Bsp143I GATC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 1 cut(s) 26
BspANI GGCC 3 cut(s) 29, 254, 343
BspLI GGNNCC 1 cut(s) 253
BspQI GCTCTTC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 54, 71
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 70, 71
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 32, 35
BsuRI GGCC 3 cut(s) 29, 254, 343
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 252
Cfr9I CCCGGG 1 cut(s) 71
CviAII CATG 5 cut(s) 7, 55, 64, 113, 278
CviJI RGCY 8 cut(s) 29, 70, 127, 132, 175, 254, 285, 343
CviKI_1 RGCY 8 cut(s) 29, 70, 127, 132, 175, 254, 285, 343
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 10, 58, 67, 116, 281
FaiI YATR 8 cut(s) 8, 56, 65, 114, 140, 224, 279, 380
FaqI GGGAC 1 cut(s) 88
FatI CATG 5 cut(s) 6, 54, 63, 112, 277
Fnu4HI GCNGC 3 cut(s) 21, 24, 27
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 21, 24, 27
FspBI CTAG 1 cut(s) 400
GluI GCNGC 3 cut(s) 21, 24, 27
HaeIII GGCC 3 cut(s) 29, 254, 343
HapII CCGG 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 5 cut(s) 10, 58, 67, 116, 281
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 327, 370
Hpy188I TCNGA 2 cut(s) 310, 321
Hpy8I GTNNAC 2 cut(s) 327, 370
HpyAV CCTTC 1 cut(s) 275
HpyCH4IV ACGT 3 cut(s) 97, 105, 228
HpyCH4V TGCA 4 cut(s) 116, 197, 370, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpySE526I ACGT 3 cut(s) 97, 105, 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 5 cut(s) 10, 58, 67, 116, 281
Kzo9I GATC 1 cut(s) 355
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 172, 180
LpnPI CCDG 4 cut(s) 51, 85, 161, 285
Lsp1109I GCAGC 2 cut(s) 32, 35
MaeI CTAG 1 cut(s) 400
MaeII ACGT 3 cut(s) 97, 105, 228
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 134, 323
MhlI GDGCHC 3 cut(s) 14, 177, 372
MluCI AATT 2 cut(s) 33, 315
MnlI CCTC 2 cut(s) 163, 316
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 2 cut(s) 72, 73
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 2 cut(s) 72, 73
NcoI CCATGG 1 cut(s) 54
NdeII GATC 1 cut(s) 355
NlaIII CATG 5 cut(s) 10, 58, 67, 116, 281
NlaIV GGNNCC 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 315
PkrI GCNGC 3 cut(s) 22, 25, 28
Ppu21I YACGTR 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 252
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 3 cut(s) 21, 24, 27
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 72, 73
SduI GDGCHC 3 cut(s) 14, 177, 372
SetI ASST 6 cut(s) 100, 108, 129, 177, 231, 308
SmaI CCCGGG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 2 cut(s) 33, 315
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 400
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 70, 71
StyI CCWWGG 1 cut(s) 54
TaiI ACGT 3 cut(s) 100, 108, 231
TasI AATT 2 cut(s) 33, 315
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 45
TseI GCWGC 2 cut(s) 20, 23
TspDTI ATGAA 3 cut(s) 80, 127, 294
TspMI CCCGGG 1 cut(s) 71
TspRI CASTG 1 cut(s) 45
VneI GTGCAC 1 cut(s) 368
XapI RAATTY 2 cut(s) 33, 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmaI CCCGGG 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 400
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.