MD06G1027500.v1.1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000805
Physical Location & Seq
Forward (+)
3362571 .. 3364274
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1027500.v1.1.491

Sequence Viewer

Length: 867 bp
ATGGCCAAAATTCCAGTGGTAGATTTCTCGAAAGATGACTGCTTGAAGCCGGGGACAAGTTCTTGGCTCTCGGCACGCAAAGACGTTTGCCGTGCACTGGAAGATATCGGCTGTTTCACGGCAATTCTTCCCAACAAAGTTCCAAAGGAACTTGCCAACACCTTCTTCTCTACATTTGACGACTTGTTTGATTTTCCAACCAGTACTCCTGAAAAGCCTTTCTTCTATGCAACTTCTAATTCCGGGCAACGAACCTACGGGATCATCAACGGCACAAACCCTCAAGATGTTCAACAATTCACACATCTCATTTGGCCCGATGGAAATGATCAATTTAGTGAGAGTGCTGACTTTTATGCAAAAGTGCTGTCGGAATTAGATCAAACTGTGACAAGAATGGTGTTTGAAAACTACGGTGTAGAGAAGTACCACGACGATCACGTTCGATCGATGTTTTACGATTTGAGAATGATTAGATACGAGAAACCCGAGAAACTTGATAGTGATGTAGGTTTAAAGATTCATACGGACAAGAACTTCTCCACCATAATCCATCAAAACCATATCAACGGTCTGGAGATAAATACAAAGGATGATGAGTGGGTGCTTTTTGATCCTCCACCTTCATCCATTATATTCATAGCAGCCGACGGATTTCAGACATATAGAGTGACCTTGACTGAAAATGTCGTAAGATACACATTTGGTGTCTTCTCTGTCAAGAAAGGGGTGATACGCGTACCAAATGAGCTCGTGGACGAAGACCACCCGTTACTGTATAAGCCTTTGAATCATGTTGAGTTCCTCATGGCACAGAGACATACTGGTGAAACTGAGTATGCCGCAAAGGCATATTGTGCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

289

Amino Acids

33.01

Weight (kDa)

5.11

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 157 - 221 2.8e-07 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 738
AciI CCGC 1 cut(s) 843
AclWI GGATC 2 cut(s) 269, 608
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 3 cut(s) 205, 428, 741
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 736
AgsI TTSAA 4 cut(s) 46, 293, 407, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 1 cut(s) 751
AluI AGCT 1 cut(s) 751
Alw21I GWGCWC 2 cut(s) 97, 753
Alw26I GTCTC 1 cut(s) 811
Alw44I GTGCAC 1 cut(s) 93
AlwI GGATC 2 cut(s) 269, 608
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 2 cut(s) 3, 314
ApaLI GTGCAC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 9
ArsI GACNNNNNNTTYG 4 cut(s) 170, 202, 353, 385
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 2 cut(s) 51, 244
AsuHPI GGTGA 2 cut(s) 742, 839
AvaI CYCGRG 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 753
BauI CACGAG 1 cut(s) 752
BbsI GAAGAC 2 cut(s) 703, 768
Bbv12I GWGCWC 2 cut(s) 97, 753
BbvI GCAGC 1 cut(s) 656
BccI CCATC 2 cut(s) 314, 561
BceAI ACGGC 3 cut(s) 75, 135, 286
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 2 cut(s) 51, 244
BcoDI GTCTC 1 cut(s) 811
BglI GCCNNNNNGGC 1 cut(s) 848
BisI GCNGC 2 cut(s) 645, 843
BlsI GCNGC 2 cut(s) 646, 844
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 51, 244
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 315
BmrFI CCNGG 2 cut(s) 51, 244
BpiI GAAGAC 2 cut(s) 703, 768
BpmI CTGGAG 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 267
BpuMI CCSGG 2 cut(s) 51, 244
Bsa29I ATCGAT 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 4 cut(s) 14, 102, 201, 829
BseCI ATCGAT 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 598, 626
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 4 cut(s) 14, 102, 201, 829
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 1 cut(s) 656
Bsh1236I CGCG 1 cut(s) 738
Bsh1285I CGRYCG 1 cut(s) 449
BshFI GGCC 2 cut(s) 5, 316
BshVI ATCGAT 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 449
BsiHKAI GWGCWC 2 cut(s) 97, 753
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 2 cut(s) 50, 243
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 811
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 5, 316
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 2 cut(s) 97, 753
Bsp143I GATC 6 cut(s) 261, 328, 379, 436, 446, 613
BspACI CCGC 1 cut(s) 843
BspANI GGCC 2 cut(s) 5, 316
BspCNI CTCAG 1 cut(s) 826
BspDI ATCGAT 1 cut(s) 449
BspFNI CGCG 1 cut(s) 738
BspPI GGATC 2 cut(s) 269, 608
BsrI ACTGG 4 cut(s) 14, 102, 201, 829
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 6 cut(s) 261, 328, 379, 436, 446, 613
BssSI CACGAG 1 cut(s) 752
Bst2BI CACGAG 1 cut(s) 752
Bst4CI ACNGT 4 cut(s) 388, 416, 572, 777
BstAPI GCANNNNNTGC 1 cut(s) 857
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 834
BstF5I GGATG 2 cut(s) 598, 626
BstFNI CGCG 1 cut(s) 738
BstKTI GATC 6 cut(s) 264, 331, 382, 439, 449, 616
BstMAI GTCTC 1 cut(s) 811
BstMBI GATC 6 cut(s) 261, 328, 379, 436, 446, 613
BstMCI CGRYCG 1 cut(s) 449
BstMWI GCNNNNNNNGC 2 cut(s) 848, 857
BstSCI CCNGG 2 cut(s) 49, 242
BstSLI GKGCMC 1 cut(s) 97
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 1 cut(s) 656
BstV2I GAAGAC 2 cut(s) 703, 768
Bsu15I ATCGAT 1 cut(s) 449
BsuRI GGCC 2 cut(s) 5, 316
BsuTUI ATCGAT 1 cut(s) 449
BtsCI GGATG 2 cut(s) 598, 626
BtsIMutI CAGTG 2 cut(s) 21, 95
Cac8I GCNNGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 315
ClaI ATCGAT 1 cut(s) 449
Csp6I GTAC 3 cut(s) 204, 427, 740
CviAII CATG 2 cut(s) 794, 808
CviJI RGCY 9 cut(s) 5, 49, 67, 111, 217, 316, 647, 751, 784
CviKI_1 RGCY 9 cut(s) 5, 49, 67, 111, 217, 316, 647, 751, 784
CviQI GTAC 3 cut(s) 204, 427, 740
DdeI CTNAG 1 cut(s) 834
DpnI GATC 6 cut(s) 263, 330, 381, 438, 448, 615
DpnII GATC 6 cut(s) 261, 328, 379, 436, 446, 613
DraI TTTAAA 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 753
Eco32I GATATC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 751
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 751
EcoRV GATATC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 753
FaeI CATG 2 cut(s) 797, 811
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 1 cut(s) 67
FatI CATG 2 cut(s) 793, 807
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 645, 843
FokI GGATG 2 cut(s) 605, 613
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 2 cut(s) 645, 843
GluI GCNGC 2 cut(s) 645, 843
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 2 cut(s) 5, 316
HapII CCGG 2 cut(s) 50, 243
Hin1II CATG 2 cut(s) 797, 811
HinfI GANTC 2 cut(s) 520, 790
HpaII CCGG 2 cut(s) 50, 243
HphI GGTGA 2 cut(s) 742, 839
Hpy166II GTNNAC 2 cut(s) 95, 757
Hpy188I TCNGA 2 cut(s) 373, 660
Hpy188III TCNNGA 5 cut(s) 28, 209, 284, 575, 721
Hpy8I GTNNAC 2 cut(s) 95, 757
Hpy99I CGWCG 2 cut(s) 437, 653
HpyAV CCTTC 2 cut(s) 172, 633
HpyCH4III ACNGT 4 cut(s) 388, 416, 572, 777
HpyCH4IV ACGT 2 cut(s) 84, 441
HpyCH4V TGCA 3 cut(s) 95, 230, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 848, 857
HpyF3I CTNAG 1 cut(s) 834
HpySE526I ACGT 2 cut(s) 84, 441
Hsp92II CATG 2 cut(s) 797, 811
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 6 cut(s) 261, 328, 379, 436, 446, 613
LpnPI CCDG 8 cut(s) 27, 63, 83, 214, 222, 256, 560, 810
Lsp1109I GCAGC 1 cut(s) 656
MaeII ACGT 2 cut(s) 84, 441
MaeIII GTNAC 3 cut(s) 388, 670, 771
MalI GATC 6 cut(s) 263, 330, 381, 438, 448, 615
MboI GATC 6 cut(s) 261, 328, 379, 436, 446, 613
MboII GAAGA 6 cut(s) 113, 119, 157, 214, 703, 773
MhlI GDGCHC 2 cut(s) 97, 753
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 9, 123, 238, 296, 332, 374
MluI ACGCGT 1 cut(s) 736
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 221, 351
MnlI CCTC 3 cut(s) 291, 627, 815
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 1 cut(s) 825
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 50, 243
MspR9I CCNGG 2 cut(s) 51, 244
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 848, 857
NciI CCSGG 2 cut(s) 51, 244
NdeII GATC 6 cut(s) 261, 328, 379, 436, 446, 613
NlaIII CATG 2 cut(s) 797, 811
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 388, 670
PcsI WCGNNNNNNNCGW 2 cut(s) 438, 486
PfeI GAWTC 2 cut(s) 520, 790
PkrI GCNGC 2 cut(s) 646, 844
Ple19I CGATCG 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 753
PspPI GGNCC 1 cut(s) 315
PvuI CGATCG 1 cut(s) 449
RsaI GTAC 3 cut(s) 205, 428, 741
RsaNI GTAC 3 cut(s) 204, 427, 740
RseI CAYNNNNRTG 1 cut(s) 825
SacI GAGCTC 1 cut(s) 753
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 2 cut(s) 645, 843
Sau3AI GATC 6 cut(s) 261, 328, 379, 436, 446, 613
Sau96I GGNCC 1 cut(s) 315
ScaI AGTACT 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 51, 244
SduI GDGCHC 2 cut(s) 97, 753
SetI ASST 8 cut(s) 87, 164, 257, 444, 514, 625, 677, 753
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
Sse9I AATT 6 cut(s) 9, 123, 238, 296, 332, 374
SsiI CCGC 1 cut(s) 843
SstI GAGCTC 1 cut(s) 753
StyD4I CCNGG 2 cut(s) 49, 242
TaaI ACNGT 4 cut(s) 388, 416, 572, 777
TaiI ACGT 2 cut(s) 87, 444
TaqI TCGA 3 cut(s) 29, 445, 449
TasI AATT 6 cut(s) 9, 123, 238, 296, 332, 374
TatI WGTACW 1 cut(s) 203
TauI GCSGC 1 cut(s) 845
TfiI GAWTC 2 cut(s) 520, 790
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 2 cut(s) 21, 102
TseFI GTSAC 2 cut(s) 388, 670
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 2 cut(s) 388, 670
TspDTI ATGAA 3 cut(s) 512, 615, 628
TspGWI ACGGA 2 cut(s) 542, 666
TspRI CASTG 2 cut(s) 21, 102
VneI GTGCAC 1 cut(s) 93
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.