Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Reverse (-)

3398507 .. 3399648

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1028300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGTGTCACAAGTGTTACCCAAACGGTACCCAAAATTCCAGTAGTAGATTTCTCCCAAGAGGATTGCTTGAAGCCAGGGACAAGTTCTTGGCTCTCAGTACGTGGAAATGTTTGTCGTTCACTCGAAGAGTTTGGCTGTTTCATGGCAGTCCTGCCCAACAAAGTTTCACCTGAGCTTCACGACAGCATGTTTGGGACATTAAAAGAGCTGTTTGATTTCCCAATTGAAACTAAAGCGCAAACTCCGCAGGAACAACCTTTAATTGATGGTCATGTAACGGGGCCTTTCCATGAAAGCTTGGCAACTGGTACAGACAGTGAAAAATCGCAAATATTCGAACATCATTTTTGGGCTAATGGAAATGATCAATATCGTGAGACTGCTGATGTGTATAGAAAAGTGATGGCAGAACTAAACCAAGTGGTTACAAGAATGGTATTCGAAAACTACAACGTAGAAAAATACCTTGACGATCACGTTCAATCGACTGTGTCCACTCTCCGCTTTAATAAATATAAGAAACCCGAGAAAATCGAAACTGGACAGGGTCTATCCGGGCATACAGACAAGACTTTTACTACCATACTCCACCAAAATCATGTCAAAGGTCTTGAGATATATACAAAAGATAACAAATGGATTGGTTTTGATCCTTTGCCTTCGTCCTTCCTATTCATGGCATGTGATGGATTTCAGGTTTGGAGCAATGACAGAATATCATCTTGTAAACATAGAGTCAATTTGAAGGAAAATGAGGAAAGATACTCGTTTGGACTATTTTCATACTTGGAAGGGGTGACACGCGCACCGGACAAGCTTACCGCAGACGACCACCCCGTGAAGTATAAGCCATTGCATATGTTGGATTATGTTCAATTTTATGTGGCCAATTATCGTAACGTTGGAGTTGGGTTTTCTGTCAAGGAATATTGCGGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

315

Amino Acids

35.93

Weight (kDa)

5.85

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	13 - 118	2.8e-06	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	168 - 261	3.3e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	807
AciI	CCGC	4 cut(s)	248, 505, 825, 936
AclI	AACGTT	1 cut(s)	903
AclWI	GGATC	1 cut(s)	647
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	841
AfaI	GTAC	3 cut(s)	30, 102, 313
AfiI	CCNNNNNNNGG	1 cut(s)	679
AgsI	TTSAA	5 cut(s)	73, 230, 485, 748, 878
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	178, 211, 300, 820
AluI	AGCT	4 cut(s)	178, 211, 300, 820
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	647
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	2 cut(s)	284, 888
ApoI	RAATTY	1 cut(s)	36
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
Asp718I	GGTACC	1 cut(s)	28
AspLEI	GCGC	2 cut(s)	241, 809
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	162, 811
AsuII	TTCGAA	2 cut(s)	339, 444
AvaI	CYCGRG	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	890
BanI	GGYRCC	1 cut(s)	28
BccI	CCATC	3 cut(s)	263, 400, 683
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	374
Bme1390I	CCNGG	2 cut(s)	78, 559
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	2 cut(s)	30, 285
BmrFI	CCNGG	2 cut(s)	78, 559
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu14I	TTCGAA	2 cut(s)	339, 444
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	559
BsaAI	YACGTR	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse1I	ACTGG	3 cut(s)	41, 313, 547
Bse3DI	GCAATG	2 cut(s)	715, 854
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	77
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMI	GCAATG	2 cut(s)	715, 854
BseMII	CTCAG	2 cut(s)	111, 165
BseNI	ACTGG	3 cut(s)	41, 313, 547
Bsh1236I	CGCG	1 cut(s)	807
BshFI	GGCC	2 cut(s)	286, 890
BshNI	GGYRCC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	2 cut(s)	558, 812
BslFI	GGGAC	2 cut(s)	94, 211
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	94, 211
BsnI	GGCC	2 cut(s)	286, 890
BsoBI	CYCGRG	1 cut(s)	527
Bsp119I	TTCGAA	2 cut(s)	339, 444
Bsp143I	GATC	3 cut(s)	367, 475, 652
BspACI	CCGC	4 cut(s)	248, 505, 825, 936
BspANI	GGCC	2 cut(s)	286, 890
BspCNI	CTCAG	2 cut(s)	110, 166
BspFNI	CGCG	1 cut(s)	807
BspLI	GGNNCC	2 cut(s)	30, 285
BspPI	GGATC	1 cut(s)	647
BspT104I	TTCGAA	2 cut(s)	339, 444
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	715, 854
BsrI	ACTGG	3 cut(s)	41, 313, 547
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	3 cut(s)	367, 475, 652
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	28, 320, 493
Bst6I	CTCTTC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	104
BstBI	TTCGAA	2 cut(s)	339, 444
BstDEI	CTNAG	2 cut(s)	97, 174
BstFNI	CGCG	1 cut(s)	807
BstHHI	GCGC	2 cut(s)	241, 809
BstKTI	GATC	3 cut(s)	370, 478, 655
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	3 cut(s)	367, 475, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	193, 687
BstSCI	CCNGG	2 cut(s)	76, 557
BstUI	CGCG	1 cut(s)	807
BsuRI	GGCC	2 cut(s)	286, 890
BtsIMutI	CAGTG	1 cut(s)	325
CfoI	GCGC	2 cut(s)	241, 809
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	29, 101, 312
CviAII	CATG	7 cut(s)	145, 190, 275, 293, 602, 679, 684
CviQI	GTAC	3 cut(s)	29, 101, 312
DdeI	CTNAG	2 cut(s)	97, 174
DpnI	GATC	3 cut(s)	369, 477, 654
DpnII	GATC	3 cut(s)	367, 475, 652
DraIII	CACNNNGTG	1 cut(s)	841
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	7 cut(s)	148, 193, 278, 296, 605, 682, 687
FaqI	GGGAC	2 cut(s)	94, 211
FatI	CATG	7 cut(s)	144, 189, 274, 292, 601, 678, 683
FauI	CCCGC	1 cut(s)	929
FauNDI	CATATG	1 cut(s)	861
FbaI	TGATCA	1 cut(s)	367
GlaI	GCGC	2 cut(s)	240, 808
HaeIII	GGCC	2 cut(s)	286, 890
HapII	CCGG	2 cut(s)	558, 812
HhaI	GCGC	2 cut(s)	241, 809
Hin1II	CATG	7 cut(s)	148, 193, 278, 296, 605, 682, 687
Hin6I	GCGC	2 cut(s)	239, 807
HinP1I	GCGC	2 cut(s)	239, 807
HindIII	AAGCTT	2 cut(s)	298, 818
HinfI	GANTC	1 cut(s)	738
HpaII	CCGG	2 cut(s)	558, 812
HphI	GGTGA	2 cut(s)	162, 811
Hpy166II	GTNNAC	3 cut(s)	122, 498, 731
Hpy188III	TCNNGA	3 cut(s)	182, 377, 614
Hpy8I	GTNNAC	3 cut(s)	122, 498, 731
HpyAV	CCTTC	4 cut(s)	672, 679, 742, 788
HpyCH4III	ACNGT	3 cut(s)	28, 320, 493
HpyCH4IV	ACGT	4 cut(s)	103, 456, 480, 903
HpyCH4V	TGCA	1 cut(s)	859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	97, 174
HpySE526I	ACGT	4 cut(s)	103, 456, 480, 903
Hsp92II	CATG	7 cut(s)	148, 193, 278, 296, 605, 682, 687
HspAI	GCGC	2 cut(s)	239, 807
KpnI	GGTACC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	367, 475, 652
LmnI	GCTCC	1 cut(s)	705
MaeII	ACGT	4 cut(s)	103, 456, 480, 903
MaeIII	GTNAC	6 cut(s)	7, 16, 277, 427, 799, 899
MalI	GATC	3 cut(s)	369, 477, 654
MboI	GATC	3 cut(s)	367, 475, 652
MboII	GAAGA	1 cut(s)	140
MfeI	CAATTG	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	6 cut(s)	36, 225, 264, 742, 878, 892
MluNI	TGGCCA	1 cut(s)	890
MlyI	GAGTC	1 cut(s)	747
MmeI	TCCRAC	2 cut(s)	846, 886
MnlI	CCTC	2 cut(s)	55, 751
Mox20I	TGGCCA	1 cut(s)	890
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	3 cut(s)	203, 263, 510
Msp20I	TGGCCA	1 cut(s)	890
MspI	CCGG	2 cut(s)	558, 812
MspR9I	CCNGG	2 cut(s)	78, 559
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	807
MwoI	GCNNNNNNNGC	1 cut(s)	247
NciI	CCSGG	1 cut(s)	559
NdeI	CATATG	1 cut(s)	861
NdeII	GATC	3 cut(s)	367, 475, 652
NlaIII	CATG	7 cut(s)	148, 193, 278, 296, 605, 682, 687
NlaIV	GGNNCC	2 cut(s)	30, 285
NmuCI	GTSAC	2 cut(s)	7, 799
NspI	RCATGY	2 cut(s)	193, 687
NspV	TTCGAA	2 cut(s)	339, 444
PcsI	WCGNNNNNNNCGW	1 cut(s)	837
PflFI	GACNNNGTC	2 cut(s)	493, 549
PleI	GAGTC	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	746
Ppu21I	YACGTR	1 cut(s)	104
Psp1406I	AACGTT	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	30, 285
PspPI	GGNCC	1 cut(s)	284
PsyI	GACNNNGTC	2 cut(s)	493, 549
RsaI	GTAC	3 cut(s)	30, 102, 313
RsaNI	GTAC	3 cut(s)	29, 101, 312
SaqAI	TTAA	3 cut(s)	203, 263, 510
Sau3AI	GATC	3 cut(s)	367, 475, 652
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	747
ScrFI	CCNGG	2 cut(s)	78, 559
SfuI	TTCGAA	2 cut(s)	339, 444
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	6 cut(s)	36, 225, 264, 742, 878, 892
SsiI	CCGC	4 cut(s)	248, 505, 825, 936
SspI	AATATT	2 cut(s)	336, 932
StyD4I	CCNGG	2 cut(s)	76, 557
TaaI	ACNGT	3 cut(s)	28, 320, 493
TaiI	ACGT	4 cut(s)	106, 459, 483, 906
TaqI	TCGA	5 cut(s)	126, 339, 444, 488, 537
TasI	AATT	6 cut(s)	36, 225, 264, 742, 878, 892
Tru1I	TTAA	3 cut(s)	203, 263, 510
Tru9I	TTAA	3 cut(s)	203, 263, 510
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	7, 799
Tsp45I	GTSAC	2 cut(s)	7, 799
TspDTI	ATGAA	4 cut(s)	133, 309, 667, 774
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	2 cut(s)	493, 549
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	2 cut(s)	193, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.