MD03G1213900.v1.1

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
29321125 .. 29327303
6179 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1213900.v1.1.491

Sequence Viewer

Length: 546 bp
ATGGAAACGATCAATTTCGTGTTGGCAGAACTAGATCAAACTGTGACAAGAATGATGTTTGAAAATTACGGTGTGGAGAAGTACCACGACGATCTCATTCAATCGACTGTATACTCTTTCAGAATGATGAAATATGACGAACCCAAGAAAATTGAAACTAATGTAGGGTTTCCCAGTCATACCGACAGGACATTTTCCACCATAATCCATCAAAACCATGTCAGCGGTCTGGAAATAAATACAAAGGGCGATGACTGGGTACTTTTTGAGCCTCCACCTTCGTCGGTCATATTCTTAGCAGGTGACGCATTTCAGATTTGGAGCAACAACAGAATTCGACCTTGTAGACATAAAGTGACCTTGAGGGAAAATGATGTAAGATACATGTTTGGTGTCTTCGCAAGGAACAAAGGGGTGATACACGTACCAAATGAGCTCGTGGACGAAGACCACCCTTTACTGTACAAGCCTATAAATCATTTGGACTTCCTTAGAGCACGGAGAATTGCTGGTACAGGTGCATATGAGTATGCCACAAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

21.07

Weight (kDa)

6.23

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 45 - 134 2.2e-17 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 290
AccI GTMKAC 2 cut(s) 111, 346
AciI CCGC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 333
AfaI GTAC 5 cut(s) 83, 261, 426, 464, 514
AflIII ACRYGT 2 cut(s) 384, 421
AgsI TTSAA 3 cut(s) 62, 101, 155
AluBI AGCT 1 cut(s) 436
AluI AGCT 1 cut(s) 436
Alw21I GWGCWC 2 cut(s) 438, 499
ApoI RAATTY 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 314, 427
BanII GRGCYC 1 cut(s) 438
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 2 cut(s) 388, 453
Bbv12I GWGCWC 2 cut(s) 438, 499
BccI CCATC 1 cut(s) 216
BfaI CTAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 290
BglI GCCNNNNNGGC 1 cut(s) 539
BmrI ACTGGG 2 cut(s) 168, 265
BmuI ACTGGG 2 cut(s) 168, 265
BpiI GAAGAC 2 cut(s) 388, 453
BpuEI CTTGAG 1 cut(s) 382
BsaAI YACGTR 1 cut(s) 424
Bse1I ACTGG 2 cut(s) 174, 260
BseNI ACTGG 2 cut(s) 174, 260
BsiHKAI GWGCWC 2 cut(s) 438, 499
Bsp1286I GDGCHC 2 cut(s) 438, 499
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 3 cut(s) 9, 34, 91
BspACI CCGC 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 2 cut(s) 174, 260
BssMI GATC 3 cut(s) 9, 34, 91
BssNAI GTATAC 1 cut(s) 112
BssSI CACGAG 1 cut(s) 437
Bst1107I GTATAC 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 437
Bst4CI ACNGT 4 cut(s) 43, 71, 109, 462
BstAUI TGTACA 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 424
BstDEI CTNAG 2 cut(s) 295, 491
BstKTI GATC 3 cut(s) 12, 37, 94
BstMBI GATC 3 cut(s) 9, 34, 91
BstMWI GCNNNNNNNGC 2 cut(s) 305, 539
BstNSI RCATGY 1 cut(s) 388
BstV2I GAAGAC 2 cut(s) 388, 453
BstZ17I GTATAC 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 290
CseI GACGC 1 cut(s) 314
Csp6I GTAC 5 cut(s) 82, 260, 425, 463, 513
CviAII CATG 2 cut(s) 218, 385
CviJI RGCY 3 cut(s) 271, 436, 469
CviKI_1 RGCY 3 cut(s) 271, 436, 469
CviQI GTAC 5 cut(s) 82, 260, 425, 463, 513
DdeI CTNAG 2 cut(s) 295, 491
DpnI GATC 3 cut(s) 11, 36, 93
DpnII GATC 3 cut(s) 9, 34, 91
Ecl136II GAGCTC 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 436
EcoRI GAATTC 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 438
FaeI CATG 2 cut(s) 221, 388
FatI CATG 2 cut(s) 217, 384
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 2 cut(s) 111, 346
FriOI GRGCYC 1 cut(s) 438
FspBI CTAG 1 cut(s) 32
HgaI GACGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 221, 388
HphI GGTGA 2 cut(s) 314, 427
Hpy166II GTNNAC 3 cut(s) 112, 347, 442
Hpy188I TCNGA 2 cut(s) 122, 315
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 3 cut(s) 112, 347, 442
Hpy99I CGWCG 2 cut(s) 92, 286
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 4 cut(s) 43, 71, 109, 462
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 1 cut(s) 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 539
HpyF3I CTNAG 2 cut(s) 295, 491
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 2 cut(s) 221, 388
Kzo9I GATC 3 cut(s) 9, 34, 91
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 7 cut(s) 172, 187, 215, 241, 285, 495, 501
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 3 cut(s) 43, 302, 355
MalI GATC 3 cut(s) 11, 36, 93
MboI GATC 3 cut(s) 9, 34, 91
MboII GAAGA 2 cut(s) 388, 458
MhlI GDGCHC 2 cut(s) 438, 499
MluCI AATT 5 cut(s) 13, 64, 150, 333, 504
MnlI CCTC 2 cut(s) 282, 357
MspA1I CMGCKG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 305, 539
NdeI CATATG 1 cut(s) 523
NdeII GATC 3 cut(s) 9, 34, 91
NlaIII CATG 2 cut(s) 221, 388
NmuCI GTSAC 3 cut(s) 43, 302, 355
NspI RCATGY 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 290
PciI ACATGT 1 cut(s) 384
Ppu21I YACGTR 1 cut(s) 424
PscI ACATGT 1 cut(s) 384
Psp124BI GAGCTC 1 cut(s) 438
RsaI GTAC 5 cut(s) 83, 261, 426, 464, 514
RsaNI GTAC 5 cut(s) 82, 260, 425, 463, 513
SacI GAGCTC 1 cut(s) 438
Sau3AI GATC 3 cut(s) 9, 34, 91
SduI GDGCHC 2 cut(s) 438, 499
SetI ASST 7 cut(s) 280, 304, 343, 362, 426, 438, 520
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 5 cut(s) 13, 64, 150, 333, 504
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 438
TaaI ACNGT 4 cut(s) 43, 71, 109, 462
TaiI ACGT 1 cut(s) 426
TaqI TCGA 2 cut(s) 104, 337
TaqII GACCGA 1 cut(s) 274
TasI AATT 5 cut(s) 13, 64, 150, 333, 504
TatI WGTACW 1 cut(s) 462
TseFI GTSAC 3 cut(s) 43, 302, 355
Tsp45I GTSAC 3 cut(s) 43, 302, 355
TspDTI ATGAA 1 cut(s) 143
TspGWI ACGGA 1 cut(s) 514
XapI RAATTY 1 cut(s) 333
XceI RCATGY 1 cut(s) 388
XmiI GTMKAC 2 cut(s) 111, 346
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.