Prupe.5G043300_v2.0.a1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000805
Physical Location & Seq
Reverse (-)
4760094 .. 4761980
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G043300.1

Sequence Viewer

Length: 438 bp
ATGGAAGAACTAGATCAAGTTGTGACAAGAATGGTATTTGAAAACTATGGCATAGAGAAGTACCATGACGATCACACTCAATCGACTGTTTCCAATCTTCGATTTACAAAATATAAAGACAAGACTAATACCACCATACTGCATCAAAATCATGTCAAGGGTTTTGATCCTTTGCCTTCATCCTGCCTGTTCCTAGCTGGTGATGGATTTCAGGTTTGGAGCAATGGCAGAATAAGCTCTTGTAAACATAGAGCGACTTTGAAGGAAAATGAGGTCAGATACTCGTTGGGGCTATTTTCTTTCCAGGAAGGGCTTATCAACAAGGACCACCCAATCCAATATAAGCCAGTGCACTTCTTGGAATATGTTCAATATTATCAAGCAAATTACTCCACCATTGGAACTGATTATTCCGTCGAGGACTATTGCGGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

146

Amino Acids

16.88

Weight (kDa)

5.94

Isoelectric Point (pI)

28.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 161
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 3 cut(s) 41, 262, 371
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 2 cut(s) 197, 237
AluI AGCT 2 cut(s) 197, 237
Alw21I GWGCWC 1 cut(s) 354
Alw44I GTGCAC 1 cut(s) 350
AlwI GGATC 1 cut(s) 161
ApaLI GTGCAC 1 cut(s) 350
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 354
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 305
BfaI CTAG 2 cut(s) 11, 194
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 3 cut(s) 13, 70, 166
BspACI CCGC 1 cut(s) 429
BspPI GGATC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 347
BssMI GATC 3 cut(s) 13, 70, 166
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 88
BstF5I GGATG 1 cut(s) 179
BstKTI GATC 3 cut(s) 16, 73, 169
BstMBI GATC 3 cut(s) 13, 70, 166
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 354
BtsCI GGATG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 61
CviAII CATG 2 cut(s) 65, 152
CviJI RGCY 5 cut(s) 197, 237, 292, 313, 346
CviKI_1 RGCY 5 cut(s) 197, 237, 292, 313, 346
CviQI GTAC 1 cut(s) 61
DpnI GATC 3 cut(s) 15, 72, 168
DpnII GATC 3 cut(s) 13, 70, 166
Eco47I GGWCC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 303
FaeI CATG 2 cut(s) 68, 155
FaiI YATR 9 cut(s) 48, 53, 66, 114, 137, 153, 249, 342, 366
FatI CATG 2 cut(s) 64, 151
FauI CCCGC 1 cut(s) 422
FokI GGATG 1 cut(s) 166
FspBI CTAG 2 cut(s) 11, 194
Hin1II CATG 2 cut(s) 68, 155
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 245, 352
Hpy188I TCNGA 1 cut(s) 278
Hpy8I GTNNAC 2 cut(s) 245, 352
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 186, 256, 302
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 142, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
Hsp92II CATG 2 cut(s) 68, 155
Kzo9I GATC 3 cut(s) 13, 70, 166
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 7 cut(s) 183, 196, 197, 200, 290, 317, 360
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 11, 194
MaeIII GTNAC 1 cut(s) 22
MalI GATC 3 cut(s) 15, 72, 168
MboI GATC 3 cut(s) 13, 70, 166
MboII GAAGA 2 cut(s) 17, 89
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 1 cut(s) 385
MnlI CCTC 2 cut(s) 265, 412
MroXI GAANNNNTTC 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 3 cut(s) 13, 70, 166
NlaIII CATG 2 cut(s) 68, 155
NmuCI GTSAC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspPI GGNCC 1 cut(s) 325
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
Sau3AI GATC 3 cut(s) 13, 70, 166
Sau96I GGNCC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 354
SetI ASST 4 cut(s) 199, 216, 239, 276
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 325
Sse9I AATT 1 cut(s) 385
SsiI CCGC 1 cut(s) 429
SspI AATATT 1 cut(s) 374
SspMI CTAG 2 cut(s) 11, 194
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 83, 100, 417
TasI AATT 1 cut(s) 385
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 1 cut(s) 354
VneI GTGCAC 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 2 cut(s) 11, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.