Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Forward (+)

8151791 .. 8154123

Gene Structure 2333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCGAGCCCTCCTGCAGAGGAAACCCTAGCAGAACCAGCAGCAGCATCTGAAGAAGAAGAAGAAGAAGCAGAGCAGAAGGTCTCCGACACCGACAACAGCGAGCAATCGCAAGAATGGGAGACCATGGCTCGAGCTTGGCTCTCGTCTTTCCCCGAGGCCAAAGCTGTGTCCATGGACGAGGTCGAGGCCTGGATCGACTCCAACTTCGATTTCATACCTGAAGGCATCAAATCCATGCCTCGCCTTGACGTCTGTCACCGCCTCATCGCTATCCAGAACTGCATGAGGTCCGCCAATCAGGAGAAAGAAGAAGATCAAGGTGACATTCCACATGCTCGATTTCAACGCACTGATCAGTGGAGACCGGTTTATATTTGGTTAGAATCTTTGAATAGAGATGACGTTGTGAAATCCAGAGATATAAGTGAGTGGCTAACTTCGAACCCGAAAATCCAAGAGTACTTGTGCTCTAGGCATTCTCGGTATCATTTGATGCACTACATCAAGAAATGCCATATGAAGATTCTGAAGAGGCGGGAAAGGAAGAAGGGTGTCCAGCAGTCTGACACACCAGCGTCTCTGAAGGTTCACAAAGATGTGGAAATGAAAAGAGAAGCTCCACTAGCCTGCACTAATTTAATCAATGTACCTCAAGATAGTGATCTATTTATGATGAAACGAAAGGAAGCACTTGAGAAATTTCAGATCTTAGTGGAGCTTGAGAAGCTGCTTGCCCCTACGTTCTTAAAGCGTGGAGATGGAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

257

Amino Acids

29.93

Weight (kDa)

5.43

Isoelectric Point (pI)

69.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AciI	CCGC	3 cut(s)	262, 294, 538
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	4 cut(s)	72, 243, 551, 605
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	464, 651
AgeI	ACCGGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	347, 394
AjnI	CCWGG	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	5 cut(s)	137, 167, 620, 721, 730
AluI	AGCT	5 cut(s)	137, 167, 620, 721, 730
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	4 cut(s)	88, 116, 358, 585
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	2 cut(s)	132, 155
AoxI	GGCC	2 cut(s)	159, 189
ApeKI	GCWGC	3 cut(s)	41, 44, 730
ApoI	RAATTY	1 cut(s)	701
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AsiGI	ACCGGT	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	251, 335
AsuII	TTCGAA	1 cut(s)	443
AvaI	CYCGRG	2 cut(s)	132, 155
AvaII	GGWCC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	53, 56, 717
BccI	CCATC	1 cut(s)	755
BciT130I	CCWGG	1 cut(s)	193
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	4 cut(s)	88, 116, 358, 585
BfaI	CTAG	3 cut(s)	29, 474, 626
BfmI	CTRYAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	708
BisI	GCNGC	3 cut(s)	42, 45, 731
BlsI	GCNGC	3 cut(s)	43, 46, 732
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	291
BmeT110I	CYCGRG	2 cut(s)	132, 155
BmgT120I	GGNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	3 cut(s)	56, 237, 486
BoxI	GACNNNNGTC	1 cut(s)	255
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	3 cut(s)	639, 716, 743
BsaBI	GATNNNNATC	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	3 cut(s)	88, 116, 358
BsaJI	CCNNGG	3 cut(s)	126, 156, 174
BsaWI	WCCGGW	1 cut(s)	367
Bse118I	RCCGGY	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	3 cut(s)	126, 156, 174
BseJI	GATNNNNATC	1 cut(s)	663
BseXI	GCAGC	3 cut(s)	53, 56, 717
BsgI	GTGCAG	1 cut(s)	616
BshFI	GGCC	2 cut(s)	161, 191
BshTI	ACCGGT	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	2 cut(s)	132, 155
BsiSI	CCGG	1 cut(s)	368
BsmAI	GTCTC	4 cut(s)	88, 116, 358, 585
BsmBI	CGTCTC	1 cut(s)	585
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	161, 191
Bso31I	GGTCTC	3 cut(s)	88, 116, 358
BsoBI	CYCGRG	2 cut(s)	132, 155
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	11, 473
Bsp143I	GATC	5 cut(s)	195, 316, 355, 664, 708
Bsp19I	CCATGG	2 cut(s)	126, 174
BspACI	CCGC	3 cut(s)	262, 294, 538
BspANI	GGCC	2 cut(s)	161, 191
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	443
BspTNI	GGTCTC	3 cut(s)	88, 116, 358
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	126, 156, 174
BssMI	GATC	5 cut(s)	195, 316, 355, 664, 708
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	126, 174
Bst2UI	CCWGG	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	104, 631, 735
BstDEI	CTNAG	1 cut(s)	712
BstDSI	CCRYGG	2 cut(s)	126, 174
BstKTI	GATC	5 cut(s)	198, 319, 358, 667, 711
BstMAI	GTCTC	4 cut(s)	88, 116, 358, 585
BstMBI	GATC	5 cut(s)	195, 316, 355, 664, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 626, 727
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	338
BstPAI	GACNNNNGTC	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	53, 56, 717
BstX2I	RGATCY	1 cut(s)	708
BstYI	RGATCY	1 cut(s)	708
BsuRI	GGCC	2 cut(s)	161, 191
BtgI	CCRYGG	2 cut(s)	126, 174
BtgZI	GCGATG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	351, 365
Cac8I	GCNNGC	3 cut(s)	104, 631, 735
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	291
CseI	GACGC	1 cut(s)	567
Csp6I	GTAC	2 cut(s)	463, 650
CspAI	ACCGGT	1 cut(s)	367
CviAII	CATG	5 cut(s)	127, 175, 238, 286, 335
CviQI	GTAC	2 cut(s)	463, 650
DdeI	CTNAG	1 cut(s)	712
DpnI	GATC	5 cut(s)	197, 318, 357, 666, 710
DpnII	GATC	5 cut(s)	195, 316, 355, 664, 708
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	126, 174
Eco147I	AGGCCT	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	3 cut(s)	88, 116, 358
Eco47I	GGWCC	1 cut(s)	291
Eco57I	CTGAAG	4 cut(s)	72, 243, 551, 605
Eco88I	CYCGRG	2 cut(s)	132, 155
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	2 cut(s)	126, 174
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	2 cut(s)	126, 174
Esp3I	CGTCTC	1 cut(s)	585
FaeI	CATG	5 cut(s)	130, 178, 241, 289, 338
FatI	CATG	5 cut(s)	126, 174, 237, 285, 334
FauI	CCCGC	1 cut(s)	531
FauNDI	CATATG	1 cut(s)	519
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	42, 45, 731
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	3 cut(s)	42, 45, 731
FspBI	CTAG	3 cut(s)	29, 474, 626
GluI	GCNGC	3 cut(s)	42, 45, 731
HaeIII	GGCC	2 cut(s)	161, 191
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	567
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	5 cut(s)	130, 178, 241, 289, 338
HinfI	GANTC	3 cut(s)	200, 386, 526
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	2 cut(s)	251, 335
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	6 cut(s)	52, 88, 531, 568, 585, 708
Hpy188III	TCNNGA	5 cut(s)	277, 302, 417, 508, 656
Hpy8I	GTNNAC	1 cut(s)	592
HpyAV	CCTTC	4 cut(s)	73, 218, 544, 580
HpyCH4IV	ACGT	3 cut(s)	252, 405, 743
HpyCH4V	TGCA	4 cut(s)	17, 285, 499, 633
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 626, 727
HpyF3I	CTNAG	1 cut(s)	712
HpySE526I	ACGT	3 cut(s)	252, 405, 743
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	5 cut(s)	130, 178, 241, 289, 338
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	5 cut(s)	195, 316, 355, 664, 708
LmnI	GCTCC	2 cut(s)	625, 718
Lsp1109I	GCAGC	3 cut(s)	53, 56, 717
LweI	GCATC	3 cut(s)	56, 237, 486
MaeI	CTAG	3 cut(s)	29, 474, 626
MaeII	ACGT	3 cut(s)	252, 405, 743
MaeIII	GTNAC	2 cut(s)	257, 323
MalI	GATC	5 cut(s)	197, 318, 357, 666, 710
MboI	GATC	5 cut(s)	195, 316, 355, 664, 708
MflI	RGATCY	1 cut(s)	708
MhlI	GDGCHC	2 cut(s)	11, 473
MluCI	AATT	2 cut(s)	637, 701
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	111, 228
MseI	TTAA	2 cut(s)	641, 749
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	193
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	3 cut(s)	38, 626, 727
NcoI	CCATGG	2 cut(s)	126, 174
NdeI	CATATG	1 cut(s)	519
NdeII	GATC	5 cut(s)	195, 316, 355, 664, 708
NlaIII	CATG	5 cut(s)	130, 178, 241, 289, 338
NmuCI	GTSAC	2 cut(s)	257, 323
NspI	RCATGY	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	191
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	386, 526
PflFI	GACNNNGTC	1 cut(s)	182
PinAI	ACCGGT	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	43, 46, 732
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PshAI	GACNNNNGTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	291
PspXI	VCTCGAGB	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	708
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	464, 651
RsaNI	GTAC	2 cut(s)	463, 650
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	641, 749
SatI	GCNGC	3 cut(s)	42, 45, 731
Sau3AI	GATC	5 cut(s)	195, 316, 355, 664, 708
Sau96I	GGNCC	1 cut(s)	291
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	2 cut(s)	11, 473
SfaNI	GCATC	3 cut(s)	56, 237, 486
SfcI	CTRYAG	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	1 cut(s)	291
SlaI	CTCGAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	4 cut(s)	132, 654, 695, 722
SmoI	CTYRAG	4 cut(s)	132, 654, 695, 722
Sse9I	AATT	2 cut(s)	637, 701
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	3 cut(s)	262, 294, 538
SspMI	CTAG	3 cut(s)	29, 474, 626
StuI	AGGCCT	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	2 cut(s)	126, 174
TaiI	ACGT	3 cut(s)	255, 408, 746
TaqI	TCGA	7 cut(s)	5, 133, 186, 198, 210, 340, 443
TasI	AATT	2 cut(s)	637, 701
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	2 cut(s)	386, 526
Tru1I	TTAA	2 cut(s)	641, 749
Tru9I	TTAA	2 cut(s)	641, 749
TscAI	CASTG	2 cut(s)	358, 365
TseFI	GTSAC	2 cut(s)	257, 323
TseI	GCWGC	3 cut(s)	41, 44, 730
Tsp45I	GTSAC	2 cut(s)	257, 323
TspDTI	ATGAA	4 cut(s)	205, 536, 623, 692
TspRI	CASTG	2 cut(s)	358, 365
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	701
XceI	RCATGY	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	132
XspI	CTAG	3 cut(s)	29, 474, 626
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.