Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Reverse (-)

16495956 .. 16497302

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1188700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGTACCAGGGATGGATTTCTTCCGGTGATAGATTTCTCCAAAGAGGACTGCTTGAAGCCAGGGACAAGTTCTTGGCTCTCCGTCCGCAGGGAGGTTTGCCGTGCACTGGAAGAGCTCGGCGGTTTCATGGCGACAATGCCCGACAAAGTTTCTGCTGAGCTCCACCAAACCATCTTTGGTGCACTGAAGGACTTGTTTGAGTTCCCTGCCGAACTCAAATCCAAAAACCGATACGAAGAGAATCCCTTTTGTGGCCATTTCATATATAATTCTGTCCATGAGAGCTTGGGGATTCAGAATCCCACACACTCGGAAGAAACTCAGAAATTCACACATCTTTTCTGGCCTAACCAAAATGATCAATTCCGTGATAGTGTAGACTCATATGTAAAGGTGATGATGGAACTTGATCATGTTGTAACAAGAATGGTATTCGAAAACTACGGTATGGAGAAGTACCACGACGAACACATTCGATCTACTTCTCACTTTATCCAGTTTGCTAAATACAAAGAACCCAGAAAAGCTGGAAGCGATGTGGGTATAGTGAGTCACACTGACAAGAACTTCCTTTTCATAGCTAGTGATGTGTTTAAGGTATGGAGTAACGGCAGAATACGAGCTTGTAGACACAGAGTCAACGTAAGAGAAAATGATGAGGCAAGATACTCGGTTGGGTTTTTCTCTCTAAAGATAGGGGTAACAACCGTACCCAAGGAGCTTGTGGACGAAGAACACCCCTTACGTTACAAGTCACTAGACCAAGTGGAGTATATCGAAGCACAAAGGAAAAATGGAATTGAGTGCACACCGGAGGCATTCTGCGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

279

Amino Acids

32.18

Weight (kDa)

5.96

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	8 - 96	2.5e-06	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	185 - 230	2e-06	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	5
AccI	GTMKAC	2 cut(s)	381, 631
AciI	CCGC	3 cut(s)	88, 123, 828
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	3 cut(s)	7, 461, 714
AfiI	CCNNNNNNNGG	4 cut(s)	90, 94, 109, 254
AgsI	TTSAA	1 cut(s)	58
AhdI	GACNNNNNGTC	1 cut(s)	638
AjnI	CCWGG	2 cut(s)	8, 61
AluBI	AGCT	7 cut(s)	118, 163, 288, 530, 584, 626, 724
AluI	AGCT	7 cut(s)	118, 163, 288, 530, 584, 626, 724
Alw21I	GWGCWC	5 cut(s)	109, 120, 165, 187, 812
Alw44I	GTGCAC	3 cut(s)	105, 183, 808
AoxI	GGCC	2 cut(s)	256, 347
ApaLI	GTGCAC	3 cut(s)	105, 183, 808
ApoI	RAATTY	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	474
Asp718I	GGTACC	1 cut(s)	5
AsuHPI	GGTGA	2 cut(s)	40, 409
AsuII	TTCGAA	1 cut(s)	438
BaeGI	GKGCMC	3 cut(s)	109, 187, 812
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	120, 165
Bbv12I	GWGCWC	5 cut(s)	109, 120, 165, 187, 812
BccI	CCATC	3 cut(s)	8, 182, 397
BceAI	ACGGC	2 cut(s)	87, 628
BcgI	CGANNNNNNTGC	2 cut(s)	654, 688
BciT130I	CCWGG	2 cut(s)	10, 63
BclI	TGATCA	2 cut(s)	361, 412
BfaI	CTAG	2 cut(s)	585, 761
BlpI	GCTNAGC	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	10, 63
BmeRI	GACNNNNNGTC	1 cut(s)	638
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	10, 63
Bpu1102I	GCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	9, 62, 717
BsaWI	WCCGGW	2 cut(s)	25, 814
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 94, 109, 254
Bse1I	ACTGG	2 cut(s)	114, 499
BseBI	CCWGG	2 cut(s)	10, 63
BseDI	CCNNGG	3 cut(s)	9, 62, 717
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	4 cut(s)	90, 94, 109, 254
BseMII	CTCAG	2 cut(s)	150, 338
BseNI	ACTGG	2 cut(s)	114, 499
BseSI	GKGCMC	3 cut(s)	109, 187, 812
BshFI	GGCC	2 cut(s)	258, 349
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	5 cut(s)	109, 120, 165, 187, 812
BsiSI	CCGG	2 cut(s)	26, 815
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	4 cut(s)	90, 94, 109, 254
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	821
BsnI	GGCC	2 cut(s)	258, 349
Bsp119I	TTCGAA	1 cut(s)	438
Bsp1286I	GDGCHC	5 cut(s)	109, 120, 165, 187, 812
Bsp143I	GATC	3 cut(s)	361, 412, 479
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	3 cut(s)	88, 123, 828
BspANI	GGCC	2 cut(s)	258, 349
BspCNI	CTCAG	2 cut(s)	151, 337
BspLI	GGNNCC	1 cut(s)	7
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	114, 499
BssECI	CCNNGG	3 cut(s)	9, 62, 717
BssMI	GATC	3 cut(s)	361, 412, 479
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	10, 63
Bst4CI	ACNGT	2 cut(s)	449, 712
Bst6I	CTCTTC	2 cut(s)	108, 234
BstBI	TTCGAA	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	159, 324
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	3 cut(s)	364, 415, 482
BstMBI	GATC	3 cut(s)	361, 412, 479
BstNI	CCWGG	2 cut(s)	10, 63
BstSCI	CCNGG	2 cut(s)	8, 61
BstSLI	GKGCMC	3 cut(s)	109, 187, 812
BsuRI	GGCC	2 cut(s)	258, 349
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	3 cut(s)	107, 185, 558
Csp6I	GTAC	3 cut(s)	6, 460, 713
CviAII	CATG	3 cut(s)	130, 281, 416
CviQI	GTAC	3 cut(s)	6, 460, 713
DdeI	CTNAG	2 cut(s)	159, 324
DpnI	GATC	3 cut(s)	363, 414, 481
DpnII	GATC	3 cut(s)	361, 412, 479
DriI	GACNNNNNGTC	1 cut(s)	638
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	108, 234
Eam1105I	GACNNNNNGTC	1 cut(s)	638
EarI	CTCTTC	2 cut(s)	108, 234
Ecl136II	GAGCTC	2 cut(s)	118, 163
Eco130I	CCWWGG	1 cut(s)	717
Eco24I	GRGCYC	2 cut(s)	120, 165
Eco53kI	GAGCTC	2 cut(s)	118, 163
Eco57I	CTGAAG	1 cut(s)	209
EcoICRI	GAGCTC	2 cut(s)	118, 163
EcoRII	CCWGG	2 cut(s)	8, 61
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	2 cut(s)	120, 165
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	3 cut(s)	133, 284, 419
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	129, 280, 415
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	2 cut(s)	361, 412
FblI	GTMKAC	2 cut(s)	381, 631
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	2 cut(s)	120, 165
FspBI	CTAG	2 cut(s)	585, 761
HaeIII	GGCC	2 cut(s)	258, 349
HapII	CCGG	2 cut(s)	26, 815
Hin1II	CATG	3 cut(s)	133, 284, 419
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	6 cut(s)	244, 295, 301, 383, 553, 639
HpaII	CCGG	2 cut(s)	26, 815
HphI	GGTGA	2 cut(s)	40, 409
Hpy166II	GTNNAC	7 cut(s)	107, 185, 382, 632, 643, 730, 810
Hpy188I	TCNGA	3 cut(s)	300, 316, 327
Hpy8I	GTNNAC	7 cut(s)	107, 185, 382, 632, 643, 730, 810
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	2 cut(s)	449, 712
HpyCH4IV	ACGT	2 cut(s)	645, 748
HpyCH4V	TGCA	3 cut(s)	107, 185, 810
HpyF3I	CTNAG	2 cut(s)	159, 324
HpySE526I	ACGT	2 cut(s)	645, 748
Hsp92II	CATG	3 cut(s)	133, 284, 419
KpnI	GGTACC	1 cut(s)	9
Ksp22I	TGATCA	2 cut(s)	361, 412
Kzo9I	GATC	3 cut(s)	361, 412, 479
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	168, 721
MaeI	CTAG	2 cut(s)	585, 761
MaeII	ACGT	2 cut(s)	645, 748
MaeIII	GTNAC	6 cut(s)	421, 554, 608, 703, 749, 756
MalI	GATC	3 cut(s)	363, 414, 481
MboI	GATC	3 cut(s)	361, 412, 479
MboII	GAAGA	5 cut(s)	14, 125, 251, 329, 746
MhlI	GDGCHC	5 cut(s)	109, 120, 165, 187, 812
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	4 cut(s)	271, 329, 365, 801
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	3 cut(s)	377, 562, 648
MnlI	CCTC	4 cut(s)	40, 88, 655, 811
Mox20I	TGGCCA	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	1 cut(s)	597
Msp20I	TGGCCA	1 cut(s)	258
MspI	CCGG	2 cut(s)	26, 815
MspR9I	CCNGG	2 cut(s)	10, 63
Mva1269I	GAATGC	1 cut(s)	821
MvaI	CCWGG	2 cut(s)	10, 63
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	3 cut(s)	361, 412, 479
NlaIII	CATG	3 cut(s)	133, 284, 419
NlaIV	GGNNCC	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	2 cut(s)	554, 756
NspV	TTCGAA	1 cut(s)	438
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	821
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	244, 295, 301
PleI	GAGTC	3 cut(s)	377, 561, 647
PpsI	GAGTC	3 cut(s)	377, 561, 647
Psp124BI	GAGCTC	2 cut(s)	120, 165
Psp6I	CCWGG	2 cut(s)	8, 61
PspGI	CCWGG	2 cut(s)	8, 61
PspN4I	GGNNCC	1 cut(s)	7
PsrI	GAACNNNNNNTAC	2 cut(s)	729, 761
RsaI	GTAC	3 cut(s)	7, 461, 714
RsaNI	GTAC	3 cut(s)	6, 460, 713
SacI	GAGCTC	2 cut(s)	120, 165
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	597
Sau3AI	GATC	3 cut(s)	361, 412, 479
SchI	GAGTC	3 cut(s)	377, 562, 648
ScrFI	CCNGG	2 cut(s)	10, 63
SduI	GDGCHC	5 cut(s)	109, 120, 165, 187, 812
SfuI	TTCGAA	1 cut(s)	438
Sse9I	AATT	4 cut(s)	271, 329, 365, 801
SsiI	CCGC	3 cut(s)	88, 123, 828
SspMI	CTAG	2 cut(s)	585, 761
SstI	GAGCTC	2 cut(s)	120, 165
StyD4I	CCNGG	2 cut(s)	8, 61
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	2 cut(s)	449, 712
TaiI	ACGT	2 cut(s)	648, 751
TaqI	TCGA	3 cut(s)	438, 478, 780
TasI	AATT	4 cut(s)	271, 329, 365, 801
TfiI	GAWTC	3 cut(s)	244, 295, 301
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	3 cut(s)	114, 192, 565
TseFI	GTSAC	2 cut(s)	554, 756
Tsp45I	GTSAC	2 cut(s)	554, 756
TspDTI	ATGAA	3 cut(s)	118, 253, 568
TspGWI	ACGGA	2 cut(s)	73, 359
TspRI	CASTG	3 cut(s)	114, 192, 565
VneI	GTGCAC	3 cut(s)	105, 183, 808
XapI	RAATTY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	2 cut(s)	176, 724
XmiI	GTMKAC	2 cut(s)	381, 631
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	2 cut(s)	585, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.