pycom06g02240

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000805
Physical Location & Seq
Forward (+)
2705520 .. 2706767
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02240.3

Sequence Viewer

Length: 897 bp
ATGGCCAAAATTCCAGTGGTAGATTTATCGAAAGATGACTGCTTGAAGCCGGGGACAAGTTCTTGGCTCTCGGCACGCAAAGACGTTTGCCGTGCACTGGAAGATATCGGCTGTTTCACGGCAATTCTTCCCAACAAAGTTCCAAAGGAACTTGCCAACACCTTCTTCTCTACATTTGACGACTTGTTTGATTTTCCAACCGGTACTCCTGAAAAGCCCTTCTTCTATGCAACTTCTAATTCCGGGCAACGAACCTACGGGATCATCAACGGCACAAACCCTCAAGATGTTCAACAATTCACACATCTCATTTGGCCCGATGGAAACGACCAATTTCGTGAGAGTGCTGACTTCTATGCAAAAGTGCTGGCGGCATTAGATCAAACTGTGACAAGAATGGTGTTTGAAAACTACGGTGTAGAGAAGTACCACGACGATCACGTTCGATCGATGTTTTACAATTTGAAAATGATTAGATACGAGAAACCCGAGAAACTTGATGGTGATGTAGGTTTAAAGATTCATACGGACAAGAACTTCTCCACCATAATCCATCAAAACCATATCAACGGTCTGGAGATAAATACAAAGGATGATGAGTGGGTGCCTTTCGATCCTCCACCTTCATCCGTAATATTCATAGCAGCTGACGGATTTCAGGTTTGGAGCAATGACAGAATCCGACCTTGTAGGCATAGAGTGACCTTGACTGAAAATGTTGTAAGATACACATTTGGTGTCTTCTCTGTCAAGAGAGGGGTGATACATGTACCGAATGAGCTCGTGGACGAAGACCACCCGTTACTGTATAAGCCCTTGAATCATGTTGAGTTCCTCATGGCACAGAGACATACTGGTGAAACTGAGTATGCCGCAAAGGCATATTGTGCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

299

Amino Acids

34.12

Weight (kDa)

5.65

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 604
AciI CCGC 2 cut(s) 371, 873
AclWI GGATC 2 cut(s) 269, 608
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 3 cut(s) 205, 428, 771
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 766
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 5 cut(s) 46, 293, 407, 466, 820
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 2 cut(s) 647, 781
AluI AGCT 2 cut(s) 647, 781
Alw21I GWGCWC 2 cut(s) 97, 783
Alw26I GTCTC 1 cut(s) 841
Alw44I GTGCAC 1 cut(s) 93
AlwI GGATC 2 cut(s) 269, 608
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 2 cut(s) 3, 314
ApaLI GTGCAC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 9
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AsiGI ACCGGT 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 2 cut(s) 51, 244
AsuHPI GGTGA 3 cut(s) 515, 772, 869
AvaI CYCGRG 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 604
BanII GRGCYC 1 cut(s) 783
BauI CACGAG 1 cut(s) 782
BbsI GAAGAC 2 cut(s) 733, 798
Bbv12I GWGCWC 2 cut(s) 97, 783
BbvI GCAGC 1 cut(s) 656
BccI CCATC 3 cut(s) 314, 494, 561
BceAI ACGGC 3 cut(s) 75, 135, 286
BcnI CCSGG 2 cut(s) 51, 244
BcoDI GTCTC 1 cut(s) 841
BglI GCCNNNNNGGC 1 cut(s) 878
BisI GCNGC 3 cut(s) 372, 645, 873
BlsI GCNGC 3 cut(s) 373, 646, 874
Bme1390I CCNGG 2 cut(s) 51, 244
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 606
BmrFI CCNGG 2 cut(s) 51, 244
BpiI GAAGAC 2 cut(s) 733, 798
BpmI CTGGAG 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 267
BpuMI CCSGG 2 cut(s) 51, 244
Bsa29I ATCGAT 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 3 cut(s) 14, 102, 859
Bse3DI GCAATG 1 cut(s) 676
BseCI ATCGAT 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 598, 626
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 3 cut(s) 14, 102, 859
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 1 cut(s) 656
Bsh1285I CGRYCG 1 cut(s) 449
BshFI GGCC 2 cut(s) 5, 316
BshNI GGYRCC 1 cut(s) 604
BshTI ACCGGT 1 cut(s) 200
BshVI ATCGAT 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 449
BsiHKAI GWGCWC 2 cut(s) 97, 783
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 3 cut(s) 50, 201, 243
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 841
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 5, 316
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 2 cut(s) 97, 783
Bsp143I GATC 5 cut(s) 261, 379, 436, 446, 613
BspACI CCGC 2 cut(s) 371, 873
BspANI GGCC 2 cut(s) 5, 316
BspCNI CTCAG 1 cut(s) 856
BspDI ATCGAT 1 cut(s) 449
BspLI GGNNCC 1 cut(s) 606
BspPI GGATC 2 cut(s) 269, 608
BspT107I GGYRCC 1 cut(s) 604
BsrDI GCAATG 1 cut(s) 676
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 3 cut(s) 14, 102, 859
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 5 cut(s) 261, 379, 436, 446, 613
BssSI CACGAG 1 cut(s) 782
Bst2BI CACGAG 1 cut(s) 782
Bst4CI ACNGT 4 cut(s) 388, 416, 572, 807
BstAPI GCANNNNNTGC 1 cut(s) 887
BstC8I GCNNGC 2 cut(s) 76, 369
BstDEI CTNAG 1 cut(s) 864
BstF5I GGATG 2 cut(s) 598, 626
BstKTI GATC 5 cut(s) 264, 382, 439, 449, 616
BstMAI GTCTC 1 cut(s) 841
BstMBI GATC 5 cut(s) 261, 379, 436, 446, 613
BstMCI CGRYCG 1 cut(s) 449
BstMWI GCNNNNNNNGC 2 cut(s) 878, 887
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 49, 242
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 656
BstV2I GAAGAC 2 cut(s) 733, 798
Bsu15I ATCGAT 1 cut(s) 449
BsuRI GGCC 2 cut(s) 5, 316
BsuTUI ATCGAT 1 cut(s) 449
BtsCI GGATG 2 cut(s) 598, 626
BtsIMutI CAGTG 2 cut(s) 21, 95
Cac8I GCNNGC 2 cut(s) 76, 369
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 315
ClaI ATCGAT 1 cut(s) 449
Csp6I GTAC 3 cut(s) 204, 427, 770
CspAI ACCGGT 1 cut(s) 200
CviAII CATG 3 cut(s) 767, 824, 838
CviJI RGCY 9 cut(s) 5, 49, 67, 111, 217, 316, 647, 781, 814
CviKI_1 RGCY 9 cut(s) 5, 49, 67, 111, 217, 316, 647, 781, 814
CviQI GTAC 3 cut(s) 204, 427, 770
DdeI CTNAG 1 cut(s) 864
DpnI GATC 5 cut(s) 263, 381, 438, 448, 615
DpnII GATC 5 cut(s) 261, 379, 436, 446, 613
DraI TTTAAA 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 781
Eco24I GRGCYC 1 cut(s) 783
Eco32I GATATC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 781
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 781
EcoRV GATATC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 783
FaeI CATG 3 cut(s) 770, 827, 841
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 1 cut(s) 67
FatI CATG 3 cut(s) 766, 823, 837
Fnu4HI GCNGC 3 cut(s) 372, 645, 873
FokI GGATG 2 cut(s) 605, 613
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 3 cut(s) 372, 645, 873
GluI GCNGC 3 cut(s) 372, 645, 873
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 2 cut(s) 5, 316
HapII CCGG 3 cut(s) 50, 201, 243
Hin1II CATG 3 cut(s) 770, 827, 841
HinfI GANTC 3 cut(s) 520, 678, 820
HpaII CCGG 3 cut(s) 50, 201, 243
HphI GGTGA 3 cut(s) 515, 772, 869
Hpy166II GTNNAC 2 cut(s) 95, 787
Hpy188I TCNGA 1 cut(s) 683
Hpy188III TCNNGA 5 cut(s) 209, 284, 338, 575, 751
Hpy8I GTNNAC 2 cut(s) 95, 787
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 172, 229, 633
HpyCH4III ACNGT 4 cut(s) 388, 416, 572, 807
HpyCH4IV ACGT 2 cut(s) 84, 441
HpyCH4V TGCA 3 cut(s) 95, 230, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 878, 887
HpyF3I CTNAG 1 cut(s) 864
HpySE526I ACGT 2 cut(s) 84, 441
Hsp92II CATG 3 cut(s) 770, 827, 841
Kzo9I GATC 5 cut(s) 261, 379, 436, 446, 613
LmnI GCTCC 1 cut(s) 666
Lsp1109I GCAGC 1 cut(s) 656
MaeII ACGT 2 cut(s) 84, 441
MaeIII GTNAC 3 cut(s) 388, 700, 801
MalI GATC 5 cut(s) 263, 381, 438, 448, 615
MboI GATC 5 cut(s) 261, 379, 436, 446, 613
MboII GAAGA 6 cut(s) 113, 119, 157, 214, 733, 803
MhlI GDGCHC 2 cut(s) 97, 783
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 9, 123, 238, 296, 332, 460
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 221, 706
MnlI CCTC 4 cut(s) 291, 627, 749, 845
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 1 cut(s) 855
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 3 cut(s) 50, 201, 243
MspR9I CCNGG 2 cut(s) 51, 244
MwoI GCNNNNNNNGC 2 cut(s) 878, 887
NciI CCSGG 2 cut(s) 51, 244
NdeII GATC 5 cut(s) 261, 379, 436, 446, 613
NlaIII CATG 3 cut(s) 770, 827, 841
NlaIV GGNNCC 1 cut(s) 606
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 388, 700
NspI RCATGY 1 cut(s) 770
PciI ACATGT 1 cut(s) 766
PcsI WCGNNNNNNNCGW 2 cut(s) 438, 486
PfeI GAWTC 3 cut(s) 520, 678, 820
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 3 cut(s) 373, 646, 874
Ple19I CGATCG 1 cut(s) 449
PscI ACATGT 1 cut(s) 766
Psp124BI GAGCTC 1 cut(s) 783
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 1 cut(s) 315
PvuI CGATCG 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 3 cut(s) 205, 428, 771
RsaNI GTAC 3 cut(s) 204, 427, 770
RseI CAYNNNNRTG 1 cut(s) 855
SacI GAGCTC 1 cut(s) 783
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 3 cut(s) 372, 645, 873
Sau3AI GATC 5 cut(s) 261, 379, 436, 446, 613
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 51, 244
SduI GDGCHC 2 cut(s) 97, 783
SmiMI CAYNNNNRTG 1 cut(s) 855
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
Sse9I AATT 6 cut(s) 9, 123, 238, 296, 332, 460
SsiI CCGC 2 cut(s) 371, 873
SspI AATATT 1 cut(s) 636
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 2 cut(s) 49, 242
TaaI ACNGT 4 cut(s) 388, 416, 572, 807
TaiI ACGT 2 cut(s) 87, 444
TaqI TCGA 4 cut(s) 29, 445, 449, 612
TasI AATT 6 cut(s) 9, 123, 238, 296, 332, 460
TauI GCSGC 2 cut(s) 374, 875
TfiI GAWTC 3 cut(s) 520, 678, 820
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 2 cut(s) 21, 102
TseFI GTSAC 2 cut(s) 388, 700
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 2 cut(s) 388, 700
TspDTI ATGAA 3 cut(s) 512, 615, 628
TspGWI ACGGA 3 cut(s) 542, 619, 666
TspRI CASTG 2 cut(s) 21, 102
VneI GTGCAC 1 cut(s) 93
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.