Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Reverse (-)

5099869 .. 5102555

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G048100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGCACCCAAACAGTGGCCAAAATTCCAGTGGTGGATTTCTCCAACGAAGACTGCTTAAAGCCGGGGACGAGTTCTTGGCTCTCCATAAGCAAAAGCATCTGCCATGCACTCGAAGAGCTGGGCTGTTTCGTCGCAATACTGCCCGGCAAAGTTTCTCCGGAGCTTCACAACACCTTCTTTGGTACGTTGGGCGAGTTGTTTGATTTCCCCACTGAAATCAAAGTGCAAAGTTCTTTTGAAAAGCCCTACCCCAGTGGCTACATAACCGCGAATGCCGCCAATGAAGGCTTGGGGATTGGCTATGCTACAGACCCTGAAGACACTCGGAGATTCACACGTCATTTTTGGCCCGAGGGACACGATTCATTTCGTGAGGGTGCTGATTTGTATGCAAAAGTGATGGAAGAGCTAGATCAAGTTGTGACAAGAATGGTGTTCGAAAACTATGGTGTAGAGAAGTACCATGATGATCACATCCAATCAATCGTTCACACGTACCGATTTAATCAATACAAAGAATTCGACAAAACTGGAATTGATGAGGGTCTACCCGCCCATACGGACAAGACCTTCAGCACCACACTCTATCAAAATCATGTCAAGGGTCTGGAAATATATTCAAAGGACAATGAGTGGATAAGTGTTGATCCTCTACCTTCATCCTTCATATTCCTAGCAGGTGATGGATTCCAGGTTTGGAGCAACGACAGAGTGCGAGCTTGTAAGCATCGAGTGACCTTGAGGGAGAACGATGTACGATACTCGTTTGGACTATTTTCATACAGAGAAGGAGAAACACACGTACCCAAGGAGCTTGTGGACAAGGACCACCCCCTACAGTACAAGGCATTGCATCAGTTCGAATATGTACAATATTTTAAAAAGAATTACTCCACCCTTGGGCCTTTGTATTCCATCAAGGAATATTGTGGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

314

Amino Acids

35.93

Weight (kDa)

5.45

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	671
Acc36I	ACCTGC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	3 cut(s)	270, 279, 555
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	24, 521
AcuI	CTGAAG	2 cut(s)	339, 559
AfaI	GTAC	7 cut(s)	187, 464, 500, 759, 807, 845, 873
AfiI	CCNNNNNNNGG	2 cut(s)	16, 903
AflIII	ACRYGT	3 cut(s)	338, 495, 802
AgsI	TTSAA	2 cut(s)	242, 624
AjiI	CACGTC	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	693
AjuI	GAANNNNNNNTTGG	2 cut(s)	474, 506
AluBI	AGCT	5 cut(s)	121, 166, 412, 722, 817
AluI	AGCT	5 cut(s)	121, 166, 412, 722, 817
AlwI	GGATC	1 cut(s)	644
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	3 cut(s)	18, 350, 905
ApoI	RAATTY	2 cut(s)	24, 521
AspS9I	GGNCC	3 cut(s)	351, 829, 905
AsuC2I	CCSGG	2 cut(s)	66, 147
AsuHPI	GGTGA	1 cut(s)	695
AsuII	TTCGAA	2 cut(s)	441, 864
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	829
BaeGI	GKGCMC	1 cut(s)	8
BaeI	ACNNNNGTAYC	2 cut(s)	789, 822
BalI	TGGCCA	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	57, 327
BccI	CCATC	3 cut(s)	397, 680, 926
BciT130I	CCWGG	1 cut(s)	695
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	2 cut(s)	66, 147
BfaI	CTAG	2 cut(s)	413, 677
BfmI	CTRYAG	2 cut(s)	309, 839
BfuAI	ACCTGC	1 cut(s)	671
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	66, 147, 695
Bme18I	GGWCC	1 cut(s)	829
BmeT110I	CYCGRG	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	341
BmgT120I	GGNCC	3 cut(s)	351, 829, 905
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	3 cut(s)	66, 147, 695
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	108, 739, 865
BmuI	ACTGGG	1 cut(s)	249
BpiI	GAAGAC	2 cut(s)	57, 327
Bpu14I	TTCGAA	2 cut(s)	441, 864
BpuEI	CTTGAG	1 cut(s)	763
BpuMI	CCSGG	2 cut(s)	66, 147
BsaAI	YACGTR	2 cut(s)	498, 805
BsaJI	CCNNGG	4 cut(s)	65, 354, 810, 901
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 903
Bse1I	ACTGG	3 cut(s)	29, 255, 538
Bse3DI	GCAATG	1 cut(s)	851
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	4 cut(s)	65, 354, 810, 901
BseGI	GGATG	2 cut(s)	477, 662
BseLI	CCNNNNNNNGG	2 cut(s)	16, 903
BseMI	GCAATG	1 cut(s)	851
BseNI	ACTGG	3 cut(s)	29, 255, 538
BseSI	GKGCMC	1 cut(s)	8
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	3 cut(s)	20, 352, 907
BshNI	GGYRCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	65, 147, 161
BslFI	GGGAC	2 cut(s)	82, 372
BslI	CCNNNNNNNGG	2 cut(s)	16, 903
BsmFI	GGGAC	2 cut(s)	82, 372
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	20, 352, 907
BsoBI	CYCGRG	1 cut(s)	353
Bsp119I	TTCGAA	2 cut(s)	441, 864
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	871
Bsp143I	GATC	3 cut(s)	415, 472, 649
BspACI	CCGC	3 cut(s)	270, 279, 555
BspANI	GGCC	3 cut(s)	20, 352, 907
BspEI	TCCGGA	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	1 cut(s)	644
BspQI	GCTCTTC	2 cut(s)	111, 402
BspT104I	TTCGAA	2 cut(s)	441, 864
BspT107I	GGYRCC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	851
BsrGI	TGTACA	1 cut(s)	871
BsrI	ACTGG	3 cut(s)	29, 255, 538
BssECI	CCNNGG	4 cut(s)	65, 354, 810, 901
BssMI	GATC	3 cut(s)	415, 472, 649
BssT1I	CCWWGG	2 cut(s)	810, 901
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	2 cut(s)	16, 843
Bst6I	CTCTTC	2 cut(s)	111, 402
BstAUI	TGTACA	1 cut(s)	871
BstBAI	YACGTR	2 cut(s)	498, 805
BstBI	TTCGAA	2 cut(s)	441, 864
BstC8I	GCNNGC	1 cut(s)	720
BstF5I	GGATG	2 cut(s)	477, 662
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	3 cut(s)	418, 475, 652
BstMBI	GATC	3 cut(s)	415, 472, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	3 cut(s)	64, 145, 693
BstSFI	CTRYAG	2 cut(s)	309, 839
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	272
BstV2I	GAAGAC	2 cut(s)	57, 327
BsuRI	GGCC	3 cut(s)	20, 352, 907
BtrI	CACGTC	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	477, 662
BtsIMutI	CAGTG	4 cut(s)	21, 36, 213, 262
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	1 cut(s)	720
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	3 cut(s)	351, 829, 905
Csp6I	GTAC	7 cut(s)	186, 463, 499, 758, 806, 844, 872
CviAII	CATG	3 cut(s)	107, 467, 599
CviQI	GTAC	7 cut(s)	186, 463, 499, 758, 806, 844, 872
DpnI	GATC	3 cut(s)	417, 474, 651
DpnII	GATC	3 cut(s)	415, 472, 649
DraI	TTTAAA	1 cut(s)	883
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	111, 402
EarI	CTCTTC	2 cut(s)	111, 402
Eco130I	CCWWGG	2 cut(s)	810, 901
Eco47I	GGWCC	1 cut(s)	829
Eco57I	CTGAAG	2 cut(s)	339, 559
Eco88I	CYCGRG	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	2 cut(s)	810, 901
ErhI	CCWWGG	2 cut(s)	810, 901
FaeI	CATG	3 cut(s)	110, 470, 602
FaqI	GGGAC	2 cut(s)	82, 372
FatI	CATG	3 cut(s)	106, 466, 598
FauI	CCCGC	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	2 cut(s)	464, 649
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	413, 677
GluI	GCNGC	1 cut(s)	279
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	20, 352, 907
HapII	CCGG	3 cut(s)	65, 147, 161
Hin1II	CATG	3 cut(s)	110, 470, 602
HinfI	GANTC	3 cut(s)	333, 365, 690
HpaII	CCGG	3 cut(s)	65, 147, 161
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	3 cut(s)	493, 551, 823
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	3 cut(s)	161, 374, 611
Hpy8I	GTNNAC	3 cut(s)	493, 551, 823
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	6 cut(s)	187, 281, 583, 669, 676, 785
HpyCH4III	ACNGT	2 cut(s)	16, 843
HpyCH4IV	ACGT	4 cut(s)	188, 340, 497, 804
HpyCH4V	TGCA	4 cut(s)	110, 229, 395, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpySE526I	ACGT	4 cut(s)	188, 340, 497, 804
Hsp92II	CATG	3 cut(s)	110, 470, 602
Kpn2I	TCCGGA	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	415, 472, 649
LguI	GCTCTTC	2 cut(s)	111, 402
LmnI	GCTCC	3 cut(s)	163, 702, 814
LweI	GCATC	3 cut(s)	108, 739, 865
MaeI	CTAG	2 cut(s)	413, 677
MaeII	ACGT	4 cut(s)	188, 340, 497, 804
MaeIII	GTNAC	2 cut(s)	424, 736
MalI	GATC	3 cut(s)	417, 474, 651
MboI	GATC	3 cut(s)	415, 472, 649
MboII	GAAGA	4 cut(s)	62, 128, 332, 419
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	4 cut(s)	24, 521, 537, 889
MluNI	TGGCCA	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	5 cut(s)	349, 370, 538, 663, 738
Mox20I	TGGCCA	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	3 cut(s)	59, 507, 882
Msp20I	TGGCCA	1 cut(s)	20
MspI	CCGG	3 cut(s)	65, 147, 161
MspR9I	CCNGG	3 cut(s)	66, 147, 695
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	695
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	2 cut(s)	66, 147
NdeII	GATC	3 cut(s)	415, 472, 649
NlaIII	CATG	3 cut(s)	110, 470, 602
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	2 cut(s)	424, 736
NspV	TTCGAA	2 cut(s)	441, 864
PaqCI	CACCTGC	1 cut(s)	671
PciSI	GCTCTTC	2 cut(s)	111, 402
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	333, 365, 690
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	280
Ppu21I	YACGTR	2 cut(s)	498, 805
Psp6I	CCWGG	1 cut(s)	693
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	3 cut(s)	351, 829, 905
PstNI	CAGNNNCTG	1 cut(s)	317
RsaI	GTAC	7 cut(s)	187, 464, 500, 759, 807, 845, 873
RsaNI	GTAC	7 cut(s)	186, 463, 499, 758, 806, 844, 872
SapI	GCTCTTC	2 cut(s)	111, 402
SaqAI	TTAA	3 cut(s)	59, 507, 882
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	3 cut(s)	415, 472, 649
Sau96I	GGNCC	3 cut(s)	351, 829, 905
ScrFI	CCNGG	3 cut(s)	66, 147, 695
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	108, 739, 865
SfcI	CTRYAG	2 cut(s)	309, 839
SfuI	TTCGAA	2 cut(s)	441, 864
SinI	GGWCC	1 cut(s)	829
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
Sse9I	AATT	4 cut(s)	24, 521, 537, 889
SsiI	CCGC	3 cut(s)	270, 279, 555
SspI	AATATT	2 cut(s)	878, 929
SspMI	CTAG	2 cut(s)	413, 677
StyD4I	CCNGG	3 cut(s)	64, 145, 693
StyI	CCWWGG	2 cut(s)	810, 901
TaaI	ACNGT	2 cut(s)	16, 843
TaiI	ACGT	4 cut(s)	191, 343, 500, 807
TaqI	TCGA	5 cut(s)	114, 441, 525, 733, 864
TasI	AATT	4 cut(s)	24, 521, 537, 889
TatI	WGTACW	2 cut(s)	843, 871
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	333, 365, 690
Tru1I	TTAA	3 cut(s)	59, 507, 882
Tru9I	TTAA	3 cut(s)	59, 507, 882
TscAI	CASTG	4 cut(s)	21, 36, 220, 262
TseFI	GTSAC	2 cut(s)	424, 736
Tsp45I	GTSAC	2 cut(s)	424, 736
TspDTI	ATGAA	5 cut(s)	300, 357, 651, 658, 771
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	4 cut(s)	21, 36, 220, 262
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	829
XapI	RAATTY	2 cut(s)	24, 521
XcmI	CCANNNNNNNNNTGG	3 cut(s)	28, 289, 817
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	2 cut(s)	413, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.