Rw2G015670

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000805
Physical Location & Seq
Reverse (-)
18321392 .. 18329647
8256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G015670.1

Sequence Viewer

Length: 936 bp
ATGACCCAGATTCCAGTGGTAGATTTCTCAGATCCCAAGTGCTTGAAGCCAGGGACAAGTTCATGGCTCTCGGCACGCAATCAAGTTTGCAATGCACTCGAGGATCAGTTTGGCTGTTTTACAGCGATACTGTCCAACAAAGTTACCTTGGAACTTCACAACACCGTCTTTGGTGCCATGAACGAGTTGTTTGAATCCCCAGACGGCATCAAAGATCAGAACAAGTACGAAAAATGGCCTTTCTGTGGCCATTTCAAGTCGAATTCTGTCCTTGAACGCTTGGGGATTTATGATCCTACAAACCCCGAAGAAATTCACAACTTTTCACGTCTTTTTTGGCCTACTGGAAATGATCAATTTTGTGATGGTGTCCATTTGTACGCAAAAGTGATGAAAGAACTAGATCAAGCTGTGACGAGAATGGTATTTGAAAACTATGGTGTAGAGAAGCACCATGATGACCACATTGAATCCAGTTTTTACTGCTTTCAATTTTCAAAATACGCGGAGCCTAAAATATCTGGAAGTAATGTGGGTATAGTGAGTCATACAGATAAGAACTTCACCTCCATACTCCATCAAAACCAGATCAATGGCCTCGAGATTTATACAAAGGATGGCGAGTGGATAGGTTTCGATCCTCATCCTCTACCTTCATCCTTCATATTCATAGCAAGTGATGTATTTCAGGTTTGGAGCAATGACAGAATAAGAGCTTGTAAACACAGGGTCAACCTGATTCACTCAGATCAGATAAGATACTCATTCGGGCTCTTCTCACTCAAAAGAGGAGTAACAACCGTACCGGAGGAGCTGGTGGACGAGGATCACCCTTTAAAGTATAAGCCGTTGAATCAGGTTGAGTATATTCAAGCACAGGGTTACAAAGATGGTGAAGGACGTGAGTGTAAGCTCAAGGCATTCTGTGGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

311

Amino Acids

35.65

Weight (kDa)

5.7

Isoelectric Point (pI)

24.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 167 - 259 3.3e-16 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccII CGCG 1 cut(s) 506
AciI CCGC 1 cut(s) 506
AclWI GGATC 5 cut(s) 26, 111, 287, 632, 834
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 262, 312
AfaI GTAC 3 cut(s) 227, 380, 804
AfiI CCNNNNNNNGG 1 cut(s) 245
AjiI CACGTC 2 cut(s) 329, 902
AjnI CCWGG 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 551, 583
AluBI AGCT 4 cut(s) 410, 716, 814, 913
AluI AGCT 4 cut(s) 410, 716, 814, 913
AlwI GGATC 5 cut(s) 26, 111, 287, 632, 834
Ama87I CYCGRG 2 cut(s) 98, 599
AoxI GGCC 4 cut(s) 236, 247, 338, 595
ApoI RAATTY 2 cut(s) 262, 312
Asp700I GAANNNNTTC 1 cut(s) 312
AsuHPI GGTGA 3 cut(s) 556, 821, 905
AvaI CYCGRG 2 cut(s) 98, 599
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 774
BccI CCATC 4 cut(s) 359, 585, 611, 884
BceAI ACGGC 2 cut(s) 220, 832
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 1 cut(s) 352
BfaI CTAG 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 51
BmeT110I CYCGRG 2 cut(s) 98, 599
BmgBI CACGTC 2 cut(s) 329, 902
BmiI GGNNCC 2 cut(s) 175, 510
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 899
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 50, 147
BsaWI WCCGGW 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 3 cut(s) 14, 349, 474
Bse3DI GCAATG 2 cut(s) 97, 706
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 50, 147
BseGI GGATG 3 cut(s) 622, 643, 656
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 2 cut(s) 97, 706
BseMII CTCAG 2 cut(s) 42, 759
BseNI ACTGG 3 cut(s) 14, 349, 474
BseRI GAGGAG 2 cut(s) 804, 824
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 4 cut(s) 238, 249, 340, 597
BshNI GGYRCC 1 cut(s) 173
BsiHKCI CYCGRG 2 cut(s) 98, 599
BsiSI CCGG 1 cut(s) 806
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 920
BsnI GGCC 4 cut(s) 238, 249, 340, 597
BsoBI CYCGRG 2 cut(s) 98, 599
Bsp1286I GDGCHC 1 cut(s) 774
BspACI CCGC 1 cut(s) 506
BspANI GGCC 4 cut(s) 238, 249, 340, 597
BspCNI CTCAG 2 cut(s) 41, 758
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 2 cut(s) 175, 510
BspPI GGATC 5 cut(s) 26, 111, 287, 632, 834
BspQI GCTCTTC 1 cut(s) 779
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 2 cut(s) 97, 706
BsrI ACTGG 3 cut(s) 14, 349, 474
BssECI CCNNGG 2 cut(s) 50, 147
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 132, 166, 802
Bst6I CTCTTC 1 cut(s) 779
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 28, 745
BstF5I GGATG 3 cut(s) 622, 643, 656
BstFNI CGCG 1 cut(s) 506
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstUI CGCG 1 cut(s) 506
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 4 cut(s) 238, 249, 340, 597
BtrI CACGTC 2 cut(s) 329, 902
BtsCI GGATG 3 cut(s) 622, 643, 656
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 76
Csp6I GTAC 3 cut(s) 226, 379, 803
CviAII CATG 3 cut(s) 63, 178, 455
CviQI GTAC 3 cut(s) 226, 379, 803
DdeI CTNAG 2 cut(s) 28, 745
DraI TTTAAA 1 cut(s) 837
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 779
EarI CTCTTC 1 cut(s) 779
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 774
Eco88I CYCGRG 2 cut(s) 98, 599
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 66, 181, 458
FaqI GGGAC 1 cut(s) 67
FatI CATG 3 cut(s) 62, 177, 454
FbaI TGATCA 1 cut(s) 352
FokI GGATG 3 cut(s) 629, 630, 643
FriOI GRGCYC 1 cut(s) 774
FspBI CTAG 1 cut(s) 401
HaeIII GGCC 4 cut(s) 238, 249, 340, 597
HapII CCGG 1 cut(s) 806
Hin1II CATG 3 cut(s) 66, 181, 458
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 6 cut(s) 10, 194, 470, 544, 739, 853
HpaII CCGG 1 cut(s) 806
HphI GGTGA 3 cut(s) 556, 821, 905
Hpy166II GTNNAC 3 cut(s) 722, 733, 820
Hpy188I TCNGA 4 cut(s) 31, 219, 748, 753
Hpy188III TCNNGA 2 cut(s) 522, 601
Hpy8I GTNNAC 3 cut(s) 722, 733, 820
HpyAV CCTTC 3 cut(s) 663, 670, 890
HpyCH4III ACNGT 3 cut(s) 132, 166, 802
HpyCH4IV ACGT 2 cut(s) 328, 901
HpyCH4V TGCA 2 cut(s) 90, 95
HpyF3I CTNAG 2 cut(s) 28, 745
HpySE526I ACGT 2 cut(s) 328, 901
Hsp92II CATG 3 cut(s) 66, 181, 458
Ksp22I TGATCA 1 cut(s) 352
LguI GCTCTTC 1 cut(s) 779
LmnI GCTCC 3 cut(s) 508, 696, 811
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 401
MaeII ACGT 2 cut(s) 328, 901
MaeIII GTNAC 4 cut(s) 142, 412, 793, 881
MboII GAAGA 2 cut(s) 320, 766
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 774
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 4 cut(s) 262, 312, 356, 491
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 8 cut(s) 94, 577, 608, 651, 657, 782, 802, 817
Mox20I TGGCCA 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 836
MslI CAYNNNNRTG 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 920
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 506
NlaIII CATG 3 cut(s) 66, 181, 458
NlaIV GGNNCC 2 cut(s) 175, 510
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 412
PaeR7I CTCGAG 2 cut(s) 98, 599
PciSI GCTCTTC 1 cut(s) 779
PctI GAATGC 1 cut(s) 920
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 5 cut(s) 10, 194, 470, 739, 853
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 175, 510
PspXI VCTCGAGB 1 cut(s) 98
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 3 cut(s) 227, 380, 804
RsaNI GTAC 3 cut(s) 226, 379, 803
RseI CAYNNNNRTG 1 cut(s) 456
SapI GCTCTTC 1 cut(s) 779
SaqAI TTAA 1 cut(s) 836
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 774
SfaNI GCATC 1 cut(s) 216
Sfr274I CTCGAG 2 cut(s) 98, 599
SlaI CTCGAG 2 cut(s) 98, 599
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 3 cut(s) 98, 599, 914
SmoI CTYRAG 3 cut(s) 98, 599, 914
Sse9I AATT 4 cut(s) 262, 312, 356, 491
SsiI CCGC 1 cut(s) 506
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 132, 166, 802
TaiI ACGT 2 cut(s) 331, 904
TaqI TCGA 4 cut(s) 99, 260, 600, 636
TasI AATT 4 cut(s) 262, 312, 356, 491
TfiI GAWTC 5 cut(s) 10, 194, 470, 739, 853
Tru1I TTAA 1 cut(s) 836
Tru9I TTAA 1 cut(s) 836
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 6 cut(s) 51, 194, 407, 645, 652, 658
TspRI CASTG 1 cut(s) 21
XapI RAATTY 2 cut(s) 262, 312
XhoI CTCGAG 2 cut(s) 98, 599
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.