MD06G1041400.v1.1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000805
Physical Location & Seq
Reverse (-)
5492210 .. 5493801
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1041400.v1.1.491

Sequence Viewer

Length: 930 bp
ATGGCCAAACTAGCAATAGTAGATTTCTCCAATGAAGACTGCTTTAAGCCTGGGACAAGTTCTTGGCTCTCAATACGCGAAGACATTTGCCATGCACTCGACGAGCTTGGCTGTTTTGTGGCAATATTACCCGACAAAATTTCTTTGGAGCTTCGCAGTACCTTCTTCGATACGTTGGCCGAGTTGTTTGATTTCCCAACTGAAAAAAAAGTGAAAAGTTTTTATGAAAATCCTTACCCCACTGGCTACATAAAAGTTGGCAACGCCGCTTATGAAAGCTTGGGGATTGCTGGTGCTACAGACCCGGAACAAACTCAAATATTCGAACATCATTTTTGGCCCAATGGACATAATGTATTTCGTGAGACTGCTGATTTGTATACAAAAGTAATGGAAGAACTACATCATGCTGTCACGAGAATGGTGTTTGAAAACTATGGTGTAGAGGAGTACCTTGATGATCACCTTGAATCGACTACTCACATGTGCCGATTTAACAAATACAGTGAGCCTGAGAAAACTGGAACTAATTTGGGTCTCCCCGGTCATACAGACTCAAACTTTAGCACCATACTCTATCAAAATCATGTCAAAGGTCTGGAAATATATTCAAAGAACGATGAGTGGATATGCATTGATCCTCTGCCTTCGTCCTTCATATTTCTAGCAGGTGATGGATTTCAGGTTTGGAGTAACGACAAAATACGAGCTTGTAAACATCGAGTGATCTTGAGCGAGAATGTTGTACGACACTCAATCGGACTATTTTCATTCAGGGTAGGGGAAACACATACACCGAAGGAGTTTATAGACGAGGACCACCCCCTACAGTATAAGCCATTGAATAACTGGGAATATACTCAATATGTAAAGAAAAATGCCTCCAGCCTTGGACCTGACTATACCGTCAAGGCATATTGTGGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

310

Amino Acids

35.42

Weight (kDa)

5.21

Isoelectric Point (pI)

22.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 6 - 113 2e-06 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 162 - 256 1.6e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 659
AasI GACNNNNNNGTC 1 cut(s) 905
Acc36I ACCTGC 1 cut(s) 659
AccI GTMKAC 1 cut(s) 380
AccII CGCG 1 cut(s) 78
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 632
AcoI YGGCCR 2 cut(s) 3, 177
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 3 cut(s) 160, 452, 747
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 4 cut(s) 431, 470, 612, 844
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 106, 151, 279, 710
AluI AGCT 4 cut(s) 106, 151, 279, 710
Alw26I GTCTC 2 cut(s) 359, 542
AlwI GGATC 1 cut(s) 632
AoxI GGCC 3 cut(s) 3, 177, 338
ApoI RAATTY 1 cut(s) 138
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AspS9I GGNCC 3 cut(s) 339, 817, 893
AsuC2I CCSGG 2 cut(s) 305, 543
AsuHPI GGTGA 2 cut(s) 455, 683
AsuII TTCGAA 1 cut(s) 324
AvaII GGWCC 2 cut(s) 817, 893
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 415
BbsI GAAGAC 2 cut(s) 42, 87
BccI CCATC 1 cut(s) 668
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 1 cut(s) 460
BcnI CCSGG 2 cut(s) 305, 543
BcoDI GTCTC 2 cut(s) 359, 542
BfaI CTAG 2 cut(s) 11, 665
BfmI CTRYAG 2 cut(s) 297, 827
BfuAI ACCTGC 1 cut(s) 659
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 3 cut(s) 51, 305, 543
Bme18I GGWCC 2 cut(s) 817, 893
BmgT120I GGNCC 3 cut(s) 339, 817, 893
BmrFI CCNGG 3 cut(s) 51, 305, 543
BmrI ACTGGG 1 cut(s) 859
BmuI ACTGGG 1 cut(s) 859
BpiI GAAGAC 2 cut(s) 42, 87
BpmI CTGGAG 1 cut(s) 868
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 751
BpuMI CCSGG 2 cut(s) 305, 543
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 3 cut(s) 50, 541, 889
Bse1I ACTGG 3 cut(s) 247, 526, 854
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 50, 541, 889
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 3 cut(s) 247, 526, 854
BseRI GAGGAG 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 5, 179, 340
BsiSI CCGG 2 cut(s) 305, 543
BslFI GGGAC 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 359, 542
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 3 cut(s) 5, 179, 340
Bso31I GGTCTC 1 cut(s) 542
Bsp119I TTCGAA 1 cut(s) 324
Bsp143I GATC 3 cut(s) 460, 637, 726
BspACI CCGC 1 cut(s) 267
BspANI GGCC 3 cut(s) 5, 179, 340
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 659
BspPI GGATC 1 cut(s) 632
BspT104I TTCGAA 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 542
BsrI ACTGG 3 cut(s) 247, 526, 854
BssECI CCNNGG 3 cut(s) 50, 541, 889
BssMI GATC 3 cut(s) 460, 637, 726
BssNAI GTATAC 1 cut(s) 381
BssSI CACGAG 1 cut(s) 415
BssT1I CCWWGG 1 cut(s) 889
Bst1107I GTATAC 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 506, 831, 907
BstBI TTCGAA 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 513
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 3 cut(s) 463, 640, 729
BstMAI GTCTC 2 cut(s) 359, 542
BstMBI GATC 3 cut(s) 460, 637, 726
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 3 cut(s) 49, 303, 541
BstSFI CTRYAG 2 cut(s) 297, 827
BstUI CGCG 1 cut(s) 78
BstV2I GAAGAC 2 cut(s) 42, 87
BstZ17I GTATAC 1 cut(s) 381
BsuRI GGCC 3 cut(s) 5, 179, 340
BtsIMutI CAGTG 2 cut(s) 240, 511
BveI ACCTGC 1 cut(s) 659
Cfr13I GGNCC 3 cut(s) 339, 817, 893
Csp6I GTAC 3 cut(s) 159, 451, 746
CviAII CATG 4 cut(s) 92, 407, 484, 587
CviQI GTAC 3 cut(s) 159, 451, 746
DdeI CTNAG 1 cut(s) 513
DpnI GATC 3 cut(s) 462, 639, 728
DpnII GATC 3 cut(s) 460, 637, 726
DrdI GACNNNNNNGTC 1 cut(s) 905
DseDI GACNNNNNNGTC 1 cut(s) 905
EaeI YGGCCR 2 cut(s) 3, 177
Eco130I CCWWGG 1 cut(s) 889
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 817, 893
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 889
EcoT22I ATGCAT 1 cut(s) 635
ErhI CCWWGG 1 cut(s) 889
FaeI CATG 4 cut(s) 95, 410, 487, 590
FaqI GGGAC 1 cut(s) 67
FatI CATG 4 cut(s) 91, 406, 483, 586
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 11, 665
GluI GCNGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 868
HaeIII GGCC 3 cut(s) 5, 179, 340
HapII CCGG 2 cut(s) 305, 543
Hin1II CATG 4 cut(s) 95, 410, 487, 590
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 2 cut(s) 470, 554
HpaII CCGG 2 cut(s) 305, 543
HphI GGTGA 2 cut(s) 455, 683
Hpy166II GTNNAC 2 cut(s) 381, 716
Hpy188I TCNGA 1 cut(s) 761
Hpy188III TCNNGA 4 cut(s) 362, 415, 599, 730
Hpy8I GTNNAC 2 cut(s) 381, 716
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 4 cut(s) 172, 657, 664, 793
HpyCH4III ACNGT 3 cut(s) 506, 831, 907
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 95, 633
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 513
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 4 cut(s) 95, 410, 487, 590
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 3 cut(s) 460, 637, 726
LmnI GCTCC 1 cut(s) 148
MaeI CTAG 2 cut(s) 11, 665
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 412, 692
MalI GATC 3 cut(s) 462, 639, 728
MboI GATC 3 cut(s) 460, 637, 726
MboII GAAGA 4 cut(s) 47, 92, 157, 407
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 138, 529
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 4 cut(s) 439, 651, 808, 892
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 635
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 45, 495
MslI CAYNNNNRTG 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 305, 543
MspR9I CCNGG 3 cut(s) 51, 305, 543
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 2 cut(s) 305, 543
NdeII GATC 3 cut(s) 460, 637, 726
NlaIII CATG 4 cut(s) 95, 410, 487, 590
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 412
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 1 cut(s) 487
NspV TTCGAA 1 cut(s) 324
PaqCI CACCTGC 1 cut(s) 659
PciI ACATGT 1 cut(s) 483
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
PscI ACATGT 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspPI GGNCC 3 cut(s) 339, 817, 893
RsaI GTAC 3 cut(s) 160, 452, 747
RsaNI GTAC 3 cut(s) 159, 451, 746
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 2 cut(s) 45, 495
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 460, 637, 726
Sau96I GGNCC 3 cut(s) 339, 817, 893
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 3 cut(s) 51, 305, 543
SfcI CTRYAG 2 cut(s) 297, 827
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 2 cut(s) 817, 893
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 730
SmoI CTYRAG 1 cut(s) 730
Sse9I AATT 2 cut(s) 138, 529
SsiI CCGC 1 cut(s) 267
SspI AATATT 2 cut(s) 126, 321
SspMI CTAG 2 cut(s) 11, 665
StyD4I CCNGG 3 cut(s) 49, 303, 541
StyI CCWWGG 1 cut(s) 889
TaaI ACNGT 3 cut(s) 506, 831, 907
TaiI ACGT 1 cut(s) 176
TaqI TCGA 5 cut(s) 99, 168, 324, 473, 721
TasI AATT 2 cut(s) 138, 529
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 2 cut(s) 45, 495
Tru9I TTAA 2 cut(s) 45, 495
TscAI CASTG 2 cut(s) 247, 511
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 5 cut(s) 48, 240, 288, 646, 759
TspRI CASTG 2 cut(s) 247, 511
VpaK11BI GGWCC 2 cut(s) 817, 893
XapI RAATTY 1 cut(s) 138
XceI RCATGY 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 846
XmiI GTMKAC 1 cut(s) 380
XspI CTAG 2 cut(s) 11, 665
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.