Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008647.1

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Reverse (-)

42421 .. 44554

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008647.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgggtagtactcctaacacggagcccaagattccggtcatagatttttccggcaacgacttaaagcccggaacaagttcatggctcgaagcctgcaacaaagtctgcaacgcactcgaagactatggctgcttcgtggcaacactgtccgatgcagactgtttggagcttcacaacaccatatttggcagcttggacgacttgtttgatttctccaaagagatcaagctccagaacactcaccagaagcctttcagcggctactattcacctaactctgttcatgaaggcttggggatcgatgatcctacaaaccctgaggttactcggaacttcaccaaacttttctggccccatggaaatcatcatttctgtgagactgcaaattcatatgccaagctggtgacggggctagaccagactgtgacaagaatgatatttgagcactatggggtggagaagtactgtgactctcgtattggatccactgattatgttcttagactccacaaatacaatgcagctgacaaggagaaaacccacaaggctcttccggagcacagtgacttgaacctcactaccattattcatcaaaaccatgtgaatggcttggaggtcaagacaaagcacgctgacaaggagaaaacccacaaggctcttccggagcacagtgacttgaacctcactaccattattcatcaaaaccatgtgaatggcttggaggtcaagacaaagcacggtgatcaatggattggctttgatgcctcccctaactcttttatattcatgactggggacgggtttcaggtatggagcaatgacagaattcaaccttgtctgcatagagtgatgatgagcgaaaatgcagtgagatactcggttatactctctacattccacaatgggatcataactgtgcccgaggtgttgatcgatgacgaacaccctttgaaatataagccactgaatcatcttgaataccttgtttcacaacttgctctaactaacagcagggtttgtcttaagaacttctgtggtctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

347

Amino Acids

39.23

Weight (kDa)

5.96

Isoelectric Point (pI)

24.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	553, 661
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	5 cut(s)	299, 305, 477, 490, 914
AcsI	RAATTY	2 cut(s)	385, 825
AfaI	GTAC	2 cut(s)	10, 464
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflII	CTTAAG	1 cut(s)	1022
AgsI	TTSAA	5 cut(s)	571, 679, 830, 952, 977
AluBI	AGCT	5 cut(s)	169, 192, 229, 400, 524
AluI	AGCT	5 cut(s)	169, 192, 229, 400, 524
Alw21I	GWGCWC	3 cut(s)	447, 561, 669
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	5 cut(s)	299, 305, 477, 490, 914
Ama87I	CYCGRG	1 cut(s)	920
Aor13HI	TCCGGA	2 cut(s)	553, 661
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	3 cut(s)	129, 189, 521
ApoI	RAATTY	2 cut(s)	385, 825
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	2 cut(s)	76, 251
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	5 cut(s)	233, 261, 328, 415, 752
AvaI	CYCGRG	1 cut(s)	920
AxyI	CCTNAGG	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	921
BamHI	GGATCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	3 cut(s)	447, 561, 669
BbvI	GCAGC	3 cut(s)	116, 201, 533
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	413
BfrI	CTTAAG	1 cut(s)	1022
BisI	GCNGC	4 cut(s)	130, 190, 259, 522
BlsI	GCNGC	4 cut(s)	131, 191, 260, 523
BmcAI	AGTACT	2 cut(s)	10, 464
Bme1390I	CCNGG	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	920
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	3 cut(s)	24, 353, 484
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	2 cut(s)	142, 751
BmuI	ACTGGG	1 cut(s)	801
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	69
Bsa29I	ATCGAT	2 cut(s)	300, 933
BsaJI	CCNNGG	2 cut(s)	355, 921
BsaWI	WCCGGW	3 cut(s)	34, 553, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	796
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	823
BseAI	TCCGGA	2 cut(s)	553, 661
BseCI	ATCGAT	2 cut(s)	300, 933
BseDI	CCNNGG	2 cut(s)	355, 921
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	823
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	796
BseSI	GKGCMC	1 cut(s)	921
BseXI	GCAGC	3 cut(s)	116, 201, 533
BshFI	GGCC	1 cut(s)	352
BshVI	ATCGAT	2 cut(s)	300, 933
BsiHKAI	GWGCWC	3 cut(s)	447, 561, 669
BsiHKCI	CYCGRG	1 cut(s)	920
BsiSI	CCGG	5 cut(s)	35, 51, 69, 554, 662
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	809
BsnI	GGCC	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	920
Bsp1286I	GDGCHC	5 cut(s)	27, 447, 561, 669, 921
Bsp13I	TCCGGA	2 cut(s)	553, 661
Bsp143I	GATC	7 cut(s)	222, 297, 304, 482, 742, 906, 930
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	310
BspDI	ATCGAT	2 cut(s)	300, 933
BspEI	TCCGGA	2 cut(s)	553, 661
BspHI	TCATGA	2 cut(s)	283, 786
BspLI	GGNNCC	3 cut(s)	24, 353, 484
BspPI	GGATC	5 cut(s)	299, 305, 477, 490, 914
BspQI	GCTCTTC	2 cut(s)	555, 663
BspTI	CTTAAG	1 cut(s)	1022
BsrDI	GCAATG	1 cut(s)	823
BsrI	ACTGG	1 cut(s)	796
BssECI	CCNNGG	2 cut(s)	355, 921
BssMI	GATC	7 cut(s)	222, 297, 304, 482, 742, 906, 930
BssT1I	CCWWGG	1 cut(s)	355
Bst4CI	ACNGT	8 cut(s)	147, 161, 424, 467, 563, 671, 740, 916
Bst6I	CTCTTC	2 cut(s)	555, 663
BstAFI	CTTAAG	1 cut(s)	1022
BstC8I	GCNNGC	2 cut(s)	94, 630
BstDEI	CTNAG	2 cut(s)	318, 500
BstDSI	CCRYGG	1 cut(s)	355
BstKTI	GATC	7 cut(s)	225, 300, 307, 485, 745, 909, 933
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	7 cut(s)	222, 297, 304, 482, 742, 906, 930
BstSCI	CCNGG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	921
BstV1I	GCAGC	3 cut(s)	116, 201, 533
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	482
BstXI	CCANNNNNNTGG	2 cut(s)	605, 713
BstYI	RGATCY	1 cut(s)	482
Bsu15I	ATCGAT	2 cut(s)	300, 933
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	352
BsuTUI	ATCGAT	2 cut(s)	300, 933
BtgI	CCRYGG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	6 cut(s)	143, 486, 568, 676, 873, 962
Cac8I	GCNNGC	2 cut(s)	94, 630
CciI	TCATGA	2 cut(s)	283, 786
Cfr13I	GGNCC	1 cut(s)	351
ClaI	ATCGAT	2 cut(s)	300, 933
Csp6I	GTAC	2 cut(s)	9, 463
CviAII	CATG	6 cut(s)	81, 284, 356, 599, 707, 787
CviQI	GTAC	2 cut(s)	9, 463
DdeI	CTNAG	2 cut(s)	318, 500
DpnI	GATC	7 cut(s)	224, 299, 306, 484, 744, 908, 932
DpnII	GATC	7 cut(s)	222, 297, 304, 482, 742, 906, 930
Eam1104I	CTCTTC	2 cut(s)	555, 663
EarI	CTCTTC	2 cut(s)	555, 663
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	27
Eco81I	CCTNAGG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	825
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	6 cut(s)	84, 287, 359, 602, 710, 790
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	6 cut(s)	80, 283, 355, 598, 706, 786
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	4 cut(s)	130, 190, 259, 522
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	4 cut(s)	130, 190, 259, 522
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	4 cut(s)	130, 190, 259, 522
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	5 cut(s)	35, 51, 69, 554, 662
Hin1II	CATG	6 cut(s)	84, 287, 359, 602, 710, 790
HinfI	GANTC	4 cut(s)	31, 470, 504, 967
HpaII	CCGG	5 cut(s)	35, 51, 69, 554, 662
HphI	GGTGA	5 cut(s)	233, 261, 328, 415, 752
Hpy188I	TCNGA	2 cut(s)	151, 330
Hpy188III	TCNNGA	8 cut(s)	232, 284, 554, 619, 662, 727, 787, 974
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	8 cut(s)	147, 161, 424, 467, 563, 671, 740, 916
HpyCH4V	TGCA	7 cut(s)	96, 108, 155, 383, 521, 841, 866
HpyF3I	CTNAG	2 cut(s)	318, 500
Hsp92II	CATG	6 cut(s)	84, 287, 359, 602, 710, 790
Kpn2I	TCCGGA	2 cut(s)	553, 661
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	7 cut(s)	222, 297, 304, 482, 742, 906, 930
LguI	GCTCTTC	2 cut(s)	555, 663
LmnI	GCTCC	6 cut(s)	22, 166, 234, 556, 664, 813
Lsp1109I	GCAGC	3 cut(s)	116, 201, 533
LweI	GCATC	2 cut(s)	142, 751
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	6 cut(s)	322, 403, 424, 467, 563, 671
MalI	GATC	7 cut(s)	224, 299, 306, 484, 744, 908, 932
MboI	GATC	7 cut(s)	222, 297, 304, 482, 742, 906, 930
MboII	GAAGA	3 cut(s)	131, 542, 650
MflI	RGATCY	1 cut(s)	482
MhlI	GDGCHC	5 cut(s)	27, 447, 561, 669, 921
MluCI	AATT	2 cut(s)	385, 825
MlyI	GAGTC	2 cut(s)	464, 498
MnlI	CCTC	7 cut(s)	313, 584, 607, 692, 715, 775, 916
MroI	TCCGGA	2 cut(s)	553, 661
MroXI	GAANNNNTTC	2 cut(s)	76, 251
MseI	TTAA	2 cut(s)	62, 1023
MslI	CAYNNNNRTG	4 cut(s)	372, 603, 711, 914
MspA1I	CMGCKG	2 cut(s)	258, 524
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	5 cut(s)	35, 51, 69, 554, 662
MspR9I	CCNGG	1 cut(s)	69
NciI	CCSGG	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	7 cut(s)	222, 297, 304, 482, 742, 906, 930
NlaIII	CATG	6 cut(s)	84, 287, 359, 602, 710, 790
NlaIV	GGNNCC	3 cut(s)	24, 353, 484
NmuCI	GTSAC	5 cut(s)	403, 424, 467, 563, 671
PagI	TCATGA	2 cut(s)	283, 786
PciSI	GCTCTTC	2 cut(s)	555, 663
PdmI	GAANNNNTTC	2 cut(s)	76, 251
PfeI	GAWTC	2 cut(s)	31, 967
PkrI	GCNGC	4 cut(s)	131, 191, 260, 523
PleI	GAGTC	2 cut(s)	464, 498
PpsI	GAGTC	2 cut(s)	464, 498
PspN4I	GGNNCC	3 cut(s)	24, 353, 484
PspPI	GGNCC	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	482
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	2 cut(s)	10, 464
RsaNI	GTAC	2 cut(s)	9, 463
RseI	CAYNNNNRTG	4 cut(s)	372, 603, 711, 914
SapI	GCTCTTC	2 cut(s)	555, 663
SaqAI	TTAA	2 cut(s)	62, 1023
SatI	GCNGC	4 cut(s)	130, 190, 259, 522
Sau3AI	GATC	7 cut(s)	222, 297, 304, 482, 742, 906, 930
Sau96I	GGNCC	1 cut(s)	351
ScaI	AGTACT	2 cut(s)	10, 464
SchI	GAGTC	2 cut(s)	464, 498
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	5 cut(s)	27, 447, 561, 669, 921
SfaNI	GCATC	2 cut(s)	142, 751
SmiMI	CAYNNNNRTG	4 cut(s)	372, 603, 711, 914
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
Sse9I	AATT	2 cut(s)	385, 825
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	8 cut(s)	147, 161, 424, 467, 563, 671, 740, 916
TaqI	TCGA	4 cut(s)	87, 117, 300, 933
TasI	AATT	2 cut(s)	385, 825
TatI	WGTACW	2 cut(s)	8, 462
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	31, 967
Tru1I	TTAA	2 cut(s)	62, 1023
Tru9I	TTAA	2 cut(s)	62, 1023
TscAI	CASTG	6 cut(s)	150, 493, 568, 676, 873, 969
TseFI	GTSAC	5 cut(s)	403, 424, 467, 563, 671
TseI	GCWGC	3 cut(s)	129, 189, 521
Tsp45I	GTSAC	5 cut(s)	403, 424, 467, 563, 671
TspDTI	ATGAA	7 cut(s)	69, 272, 300, 378, 578, 686, 775
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	6 cut(s)	150, 493, 568, 676, 873, 969
Vha464I	CTTAAG	1 cut(s)	1022
XapI	RAATTY	2 cut(s)	385, 825
XmnI	GAANNNNTTC	2 cut(s)	76, 251
XspI	CTAG	1 cut(s)	413
ZrmI	AGTACT	2 cut(s)	10, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.