FvH4_7g28431

Mitochondrial metalloendopeptidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
21064676 .. 21067838
3163 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28431.t1

Sequence Viewer

Length: 1242 bp
ATGGCGAACTACAGACGAGCCAACCTCGCCGTCGACGCCTTCCGGAGCTTCACATCAAGAATCCAATCTAAACCAAACCCAATCTCCAGAGTGTTCTCGACAAACTCGACAAAGTCATCATCTTCGGCCACAAAACCAGCTACGTTATCTGGGTTTTCTCCTTCCTATTCTATTTCACACAACCCAATTCCGCAAAACCGATTAAGCCCGCTTATTGGTTTCGCCGGAAAAAGATACTACCACGTGGATCGGCGGCAGGTGCGGCATTTCCGGCAGAGGGGCCCACGCCGGTGGGCCGACTGGTTCAAGGACCCGAGGAGGGCGTTTGTTACTATTGTGGTGGGCGGTGGGGTTTTTGTTACCTTGTATTTTGGGAACTTGGAGACTGTGCCATACACAAAGCGTAAGCATTTTGTGATTCTGTCGACGAGTATGGAGAGGAAGCTGGGAGAGTCGCAGTTTGAGGAAATGAAAGCCGGGTTCAAGGGGAAGATTTTGCCTGCGATTCACCCGGAGAGTGTGAGGGTTAGGCTGATTAGCCAGGAGATAATTGATGCGTTGAAGAGAGGGTTGAGGCATGATCAGGGGTGGACTGACATGGGTTATGCCTCCGAGGAGTTTGACCCGAGATTCGAGGGGAGGGGGAGTGAGACAGTGCAGGTGTTGATGGAGGAGGGTGAGGAAGGGAAGGCGGAGGGGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCGTAGTAGGAAGAAGGGTAAGGATAGTAAGGATGCCACTTCGCATTTGGTTGATTTGAATTGGGAGGTTTTGGTGGTGGACCAGCCGATTGTCAATGCGTTTTGTTTGCCGGGTGGGAAGATTGTGGTGTTTACAGGGTTGCTTAAGCATTTTAGGAGTGATGCCGAGATTGCTACCATAATTGGTCATGAGGTTGGGCATGCTGTGGCTCGACACTCTGCTGAGGGCATCACAAAGAACCTGTGGGTTGCGATCTTGTCATTGGTTCTTTATCAGCTTATTTCGCCTGATTTTGTCAACCCGTTATCCAATCTTTTCTTAAGGCTTCCTTTTTCCCGAAGGTACGTTACTGCTGATTATCATTTGCTTACGATAGAGGATTATGTTCTGTATGACTCTTCTTATTGTTGGTTCGTTCTGATGGTGGAATATGCATGCCTTGAATGGTTGCATATGGCTTGTTATCTTTGTAGTGATGGTTTTGGATCGTTATACTAG

Protein Analysis

414

Amino Acids

47.16

Weight (kDa)

8.91

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 263 - 340 3.5e-19 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 247, 649
Acc36I ACCTGC 2 cut(s) 247, 649
AccI GTMKAC 2 cut(s) 33, 425
AccIII TCCGGA 1 cut(s) 42
AciI CCGC 6 cut(s) 191, 209, 253, 262, 345, 692
AclWI GGATC 2 cut(s) 255, 1237
AcoI YGGCCR 1 cut(s) 126
AcvI CACGTG 2 cut(s) 244, 710
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 1088
AfiI CCNNNNNNNGG 3 cut(s) 215, 277, 319
AflII CTTAAG 2 cut(s) 887, 1063
AgsI TTSAA 5 cut(s) 307, 484, 562, 802, 1187
AjnI CCWGG 1 cut(s) 540
AleI CACNNNNGTG 1 cut(s) 289
AluBI AGCT 4 cut(s) 48, 140, 445, 1021
AluI AGCT 4 cut(s) 48, 140, 445, 1021
Alw26I GTCTC 2 cut(s) 377, 644
AlwI GGATC 2 cut(s) 255, 1237
Ama87I CYCGRG 2 cut(s) 313, 625
Aor13HI TCCGGA 1 cut(s) 42
AoxI GGCC 3 cut(s) 126, 280, 294
ApaI GGGCCC 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AspS9I GGNCC 5 cut(s) 280, 281, 294, 310, 823
AsuC2I CCSGG 3 cut(s) 478, 512, 855
AsuHPI GGTGA 2 cut(s) 500, 689
AvaI CYCGRG 2 cut(s) 313, 625
AvaII GGWCC 2 cut(s) 310, 823
BaeGI GKGCMC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 1075, 1107
BbrPI CACGTG 2 cut(s) 244, 710
BbvCI CCTCAGC 1 cut(s) 966
BccI CCATC 3 cut(s) 661, 1159, 1214
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 542
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 3 cut(s) 478, 512, 855
BcoDI GTCTC 2 cut(s) 377, 644
BfaI CTAG 1 cut(s) 1240
BfmI CTRYAG 1 cut(s) 10
BfrI CTTAAG 2 cut(s) 887, 1063
BfuAI ACCTGC 2 cut(s) 247, 649
BisI GCNGC 2 cut(s) 254, 263
BlsI GCNGC 2 cut(s) 255, 264
Bme1390I CCNGG 4 cut(s) 478, 512, 542, 855
Bme18I GGWCC 2 cut(s) 310, 823
BmeT110I CYCGRG 2 cut(s) 313, 625
BmgT120I GGNCC 5 cut(s) 280, 281, 294, 310, 823
BmiI GGNNCC 3 cut(s) 281, 282, 312
BmrFI CCNGG 4 cut(s) 478, 512, 542, 855
BmsI GCATC 4 cut(s) 544, 766, 895, 981
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BpmI CTGGAG 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 966
BpuMI CCSGG 3 cut(s) 478, 512, 855
BsaAI YACGTR 2 cut(s) 244, 710
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 314, 612
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 631, 661
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 277, 319
Bse118I RCCGGY 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 42
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 314, 612
BseGI GGATG 2 cut(s) 721, 781
BseLI CCNNNNNNNGG 3 cut(s) 215, 277, 319
BseMII CTCAG 1 cut(s) 957
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 3 cut(s) 331, 629, 686
BseSI GKGCMC 1 cut(s) 284
BseYI CCCAGC 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 677
BshFI GGCC 3 cut(s) 128, 282, 296
BsiHKCI CYCGRG 2 cut(s) 313, 625
BsiSI CCGG 7 cut(s) 43, 225, 271, 289, 477, 512, 854
BslI CCNNNNNNNGG 3 cut(s) 215, 277, 319
BsmAI GTCTC 2 cut(s) 377, 644
BsnI GGCC 3 cut(s) 128, 282, 296
BsoBI CYCGRG 2 cut(s) 313, 625
Bsp120I GGGCCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 42
Bsp143I GATC 4 cut(s) 247, 580, 996, 1229
BspACI CCGC 6 cut(s) 191, 209, 253, 262, 345, 692
BspANI GGCC 3 cut(s) 128, 282, 296
BspCNI CTCAG 1 cut(s) 958
BspEI TCCGGA 1 cut(s) 42
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 3 cut(s) 281, 282, 312
BspMI ACCTGC 2 cut(s) 247, 649
BspPI GGATC 2 cut(s) 255, 1237
BspTI CTTAAG 2 cut(s) 887, 1063
BsrFI RCCGGY 1 cut(s) 288
BsrI ACTGG 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 288
BssECI CCNNGG 2 cut(s) 314, 612
BssMI GATC 4 cut(s) 247, 580, 996, 1229
BssNI GRCGYC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 2 cut(s) 388, 655
Bst6I CTCTTC 2 cut(s) 557, 1147
BstACI GRCGYC 1 cut(s) 36
BstAFI CTTAAG 2 cut(s) 887, 1063
BstBAI YACGTR 2 cut(s) 244, 710
BstC8I GCNNGC 4 cut(s) 209, 501, 945, 1180
BstDEI CTNAG 1 cut(s) 966
BstF5I GGATG 2 cut(s) 721, 781
BstKTI GATC 4 cut(s) 250, 583, 999, 1232
BstMAI GTCTC 2 cut(s) 377, 644
BstMBI GATC 4 cut(s) 247, 580, 996, 1229
BstMWI GCNNNNNNNGC 7 cut(s) 26, 35, 259, 262, 271, 914, 1027
BstNI CCWGG 1 cut(s) 542
BstNSI RCATGY 2 cut(s) 947, 1182
BstSCI CCNGG 4 cut(s) 476, 510, 540, 853
BstSFI CTRYAG 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 291
BsuRI GGCC 3 cut(s) 128, 282, 296
BtsCI GGATG 2 cut(s) 721, 781
BtsIMutI CAGTG 1 cut(s) 660
BveI ACCTGC 2 cut(s) 247, 649
Cac8I GCNNGC 4 cut(s) 209, 501, 945, 1180
CciI TCATGA 1 cut(s) 931
Cfr10I RCCGGY 1 cut(s) 288
Cfr13I GGNCC 5 cut(s) 280, 281, 294, 310, 823
CseI GACGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 1087
CviAII CATG 5 cut(s) 578, 598, 932, 944, 1179
CviQI GTAC 1 cut(s) 1087
DdeI CTNAG 1 cut(s) 966
DpnI GATC 4 cut(s) 249, 582, 998, 1231
DpnII GATC 4 cut(s) 247, 580, 996, 1229
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 557, 1147
EarI CTCTTC 2 cut(s) 557, 1147
EciI GGCGGA 1 cut(s) 707
Eco24I GRGCYC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 310, 823
Eco72I CACGTG 2 cut(s) 244, 710
Eco88I CYCGRG 2 cut(s) 313, 625
EcoO109I RGGNCCY 2 cut(s) 280, 310
EcoRII CCWGG 1 cut(s) 540
EcoT22I ATGCAT 1 cut(s) 1180
EcoT38I GRGCYC 1 cut(s) 284
FaeI CATG 5 cut(s) 581, 601, 935, 947, 1182
FalI AAGNNNNNCTT 2 cut(s) 1057, 1089
FatI CATG 5 cut(s) 577, 597, 931, 943, 1178
FauI CCCGC 1 cut(s) 216
FauNDI CATATG 1 cut(s) 1197
FbaI TGATCA 1 cut(s) 580
FblI GTMKAC 2 cut(s) 33, 425
Fnu4HI GCNGC 2 cut(s) 254, 263
FokI GGATG 2 cut(s) 728, 788
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 254, 263
FspBI CTAG 1 cut(s) 1240
GluI GCNGC 2 cut(s) 254, 263
GsaI CCCAGC 1 cut(s) 449
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 3 cut(s) 128, 282, 296
HapII CCGG 7 cut(s) 43, 225, 271, 289, 477, 512, 854
HgaI GACGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 5 cut(s) 581, 601, 935, 947, 1182
HincII GTYRAC 3 cut(s) 34, 426, 1042
HindII GTYRAC 3 cut(s) 34, 426, 1042
HinfI GANTC 7 cut(s) 60, 418, 452, 505, 630, 721, 1139
HpaII CCGG 7 cut(s) 43, 225, 271, 289, 477, 512, 854
HphI GGTGA 2 cut(s) 500, 689
Hpy166II GTNNAC 6 cut(s) 34, 426, 591, 823, 876, 1042
Hpy188I TCNGA 2 cut(s) 613, 1164
Hpy188III TCNNGA 7 cut(s) 43, 57, 87, 97, 725, 932, 1080
Hpy8I GTNNAC 6 cut(s) 34, 426, 591, 823, 876, 1042
Hpy99I CGWCG 3 cut(s) 35, 38, 430
HpyAV CCTTC 6 cut(s) 49, 171, 677, 682, 751, 1077
HpyCH4III ACNGT 2 cut(s) 388, 655
HpyCH4IV ACGT 4 cut(s) 143, 243, 709, 1089
HpyCH4V TGCA 3 cut(s) 658, 1178, 1195
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 35, 259, 262, 271, 914, 1027
HpyF3I CTNAG 1 cut(s) 966
HpySE526I ACGT 4 cut(s) 143, 243, 709, 1089
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 5 cut(s) 581, 601, 935, 947, 1182
Kpn2I TCCGGA 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 4 cut(s) 247, 580, 996, 1229
LmnI GCTCC 1 cut(s) 45
LweI GCATC 4 cut(s) 544, 766, 895, 981
MaeI CTAG 1 cut(s) 1240
MaeII ACGT 4 cut(s) 143, 243, 709, 1089
MaeIII GTNAC 4 cut(s) 328, 358, 705, 1090
MalI GATC 4 cut(s) 249, 582, 998, 1231
MboI GATC 4 cut(s) 247, 580, 996, 1229
MboII GAAGA 6 cut(s) 114, 502, 574, 766, 874, 1134
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 5 cut(s) 186, 549, 700, 802, 924
MlyI GAGTC 2 cut(s) 461, 1133
Mph1103I ATGCAT 1 cut(s) 1180
MroI TCCGGA 1 cut(s) 42
MseI TTAA 3 cut(s) 203, 888, 1064
MslI CAYNNNNRTG 1 cut(s) 289
MspCI CTTAAG 2 cut(s) 887, 1063
MspI CCGG 7 cut(s) 43, 225, 271, 289, 477, 512, 854
MspR9I CCNGG 4 cut(s) 478, 512, 542, 855
MvaI CCWGG 1 cut(s) 542
MwoI GCNNNNNNNGC 7 cut(s) 26, 35, 259, 262, 271, 914, 1027
NciI CCSGG 3 cut(s) 478, 512, 855
NdeI CATATG 1 cut(s) 1197
NdeII GATC 4 cut(s) 247, 580, 996, 1229
NlaIII CATG 5 cut(s) 581, 601, 935, 947, 1182
NlaIV GGNNCC 3 cut(s) 281, 282, 312
NmeAIII GCCGAG 1 cut(s) 934
NmuCI GTSAC 1 cut(s) 705
NsiI ATGCAT 1 cut(s) 1180
NspI RCATGY 2 cut(s) 947, 1182
OliI CACNNNNGTG 1 cut(s) 289
PaeI GCATGC 2 cut(s) 947, 1182
PagI TCATGA 1 cut(s) 931
PaqCI CACCTGC 2 cut(s) 247, 649
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PfeI GAWTC 5 cut(s) 60, 418, 505, 630, 721
PflFI GACNNNGTC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 255, 264
PleI GAGTC 2 cut(s) 460, 1133
PmaCI CACGTG 2 cut(s) 244, 710
PmlI CACGTG 2 cut(s) 244, 710
PpsI GAGTC 2 cut(s) 460, 1133
Ppu21I YACGTR 2 cut(s) 244, 710
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 540
PspCI CACGTG 2 cut(s) 244, 710
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 3 cut(s) 281, 282, 312
PspOMI GGGCCC 1 cut(s) 280
PspPI GGNCC 5 cut(s) 280, 281, 294, 310, 823
PspPPI RGGWCCY 1 cut(s) 310
PsyI GACNNNGTC 1 cut(s) 112
RsaI GTAC 1 cut(s) 1088
RsaNI GTAC 1 cut(s) 1087
RseI CAYNNNNRTG 1 cut(s) 289
SalI GTCGAC 2 cut(s) 32, 424
SaqAI TTAA 3 cut(s) 203, 888, 1064
SatI GCNGC 2 cut(s) 254, 263
Sau3AI GATC 4 cut(s) 247, 580, 996, 1229
Sau96I GGNCC 5 cut(s) 280, 281, 294, 310, 823
SchI GAGTC 2 cut(s) 461, 1133
ScrFI CCNGG 4 cut(s) 478, 512, 542, 855
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 4 cut(s) 544, 766, 895, 981
SfcI CTRYAG 1 cut(s) 10
SgrAI CRCCGGYG 1 cut(s) 288
SgrDI CGTCGACG 1 cut(s) 32
SinI GGWCC 2 cut(s) 310, 823
SmiMI CAYNNNNRTG 1 cut(s) 289
SmlI CTYRAG 2 cut(s) 887, 1063
SmoI CTYRAG 2 cut(s) 887, 1063
SphI GCATGC 2 cut(s) 947, 1182
Sse9I AATT 5 cut(s) 186, 549, 700, 802, 924
SsiI CCGC 6 cut(s) 191, 209, 253, 262, 345, 692
SspMI CTAG 1 cut(s) 1240
StyD4I CCNGG 4 cut(s) 476, 510, 540, 853
TaaI ACNGT 2 cut(s) 388, 655
TaiI ACGT 4 cut(s) 146, 246, 712, 1092
TaqI TCGA 6 cut(s) 33, 98, 107, 425, 633, 955
TasI AATT 5 cut(s) 186, 549, 700, 802, 924
TauI GCSGC 2 cut(s) 256, 265
TfiI GAWTC 5 cut(s) 60, 418, 505, 630, 721
Tru1I TTAA 3 cut(s) 203, 888, 1064
Tru9I TTAA 3 cut(s) 203, 888, 1064
TscAI CASTG 1 cut(s) 660
TseFI GTSAC 1 cut(s) 705
Tsp45I GTSAC 1 cut(s) 705
TspDTI ATGAA 1 cut(s) 485
TspRI CASTG 1 cut(s) 660
Tth111I GACNNNGTC 1 cut(s) 112
Vha464I CTTAAG 2 cut(s) 887, 1063
VpaK11BI GGWCC 2 cut(s) 310, 823
XceI RCATGY 2 cut(s) 947, 1182
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XmiI GTMKAC 2 cut(s) 33, 425
XspI CTAG 1 cut(s) 1240
Zsp2I ATGCAT 1 cut(s) 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.