Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

24335040 .. 24335831

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAAGAGAGTTTCAAAGGGGAAATTTTGCCCGCCATACACCCGGATAGCGTGCGGGTTCGGTTGATTGCCAAGGATAGAATTGAGGCTTTGCAGAGAGGGTTGAGCCATGAGGTGACCTGGACTGATGTGGACTATGCGTCCGGTAAAGTGGAGCCAGCGCATGAAGGTGGTGGGAAGGATATTTTGATGGCACTGCATGACGCTCCGGACCAGGGGAAGTGGTCCCGTGAGGATGAGATTCTTGATGATCAGTGGATTGAGAAGAGTAGGAAGACGAGTAGGGAGAGAGGTTTGAAAGCTGCCACTTCACATTTGGATCAATTGAATTGGGAGGTTTTGGTAGTGGATCGGCCTGTTATGAATGCATTTTGCTTGCCGGGTGGGAAGATTGTCGTCTTCACGGGATTGCTCAAGCATTTTAGAAGTGATGCAGAGATAGCAACGATCATTGGTCATGAGGTTGGCCATGCTGTGGCTCGACATTCTGCAGAGACTATTACAAAGAGCCTGTGGTTTGAAATTTTGCAACTGGTACTTTATCAATTCATTACGCCTGATGTTTTCAACACAATGTCCAATCTTTTCTTGAGGCTTCCTTTCTCCCGAAGGTACATTACAGTTCTTTATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

212

Amino Acids

23.98

Weight (kDa)

6.31

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	2 cut(s)	33, 55
AclWI	GGATC	2 cut(s)	327, 357
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	24, 522
AfaI	GTAC	2 cut(s)	537, 614
AfiI	CCNNNNNNNGG	2 cut(s)	215, 475
AgsI	TTSAA	5 cut(s)	16, 298, 328, 521, 568
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	119, 213
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	2 cut(s)	327, 357
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	2 cut(s)	353, 466
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	24, 522
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	211, 225
AsuC2I	CCSGG	2 cut(s)	44, 381
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	211, 225
BalI	TGGCCA	1 cut(s)	468
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BbsI	GAAGAC	2 cut(s)	281, 391
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	121, 215
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	2 cut(s)	44, 381
BcoDI	GTCTC	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	4 cut(s)	44, 121, 215, 381
Bme18I	GGWCC	2 cut(s)	211, 225
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	211, 225
BmiI	GGNNCC	2 cut(s)	156, 227
BmrFI	CCNGG	4 cut(s)	44, 121, 215, 381
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	2 cut(s)	281, 391
BpuEI	CTTGAG	2 cut(s)	398, 610
BpuMI	CCSGG	2 cut(s)	44, 381
BsaJI	CCNNGG	2 cut(s)	72, 214
BsaWI	WCCGGW	2 cut(s)	143, 208
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 475
Bse1I	ACTGG	1 cut(s)	537
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	121, 215
BseDI	CCNNGG	2 cut(s)	72, 214
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	215, 475
BseNI	ACTGG	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	2 cut(s)	355, 468
BsiSI	CCGG	4 cut(s)	44, 144, 209, 380
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	215, 475
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	355, 468
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	250, 319, 349, 447
BspACI	CCGC	2 cut(s)	33, 55
BspANI	GGCC	2 cut(s)	355, 468
BspEI	TCCGGA	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	156, 227
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	2 cut(s)	327, 357
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	72, 214
BssMI	GATC	4 cut(s)	250, 319, 349, 447
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	121, 215
Bst4CI	ACNGT	1 cut(s)	622
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	33, 53, 159, 377
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	4 cut(s)	253, 322, 352, 450
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	4 cut(s)	250, 319, 349, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	2 cut(s)	121, 215
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	4 cut(s)	42, 119, 213, 379
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	2 cut(s)	281, 391
BsuRI	GGCC	2 cut(s)	355, 468
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	194, 260
Cac8I	GCNNGC	4 cut(s)	33, 53, 159, 377
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	211, 225
CseI	GACGC	2 cut(s)	129, 212
Csp6I	GTAC	2 cut(s)	536, 613
CviAII	CATG	5 cut(s)	110, 164, 200, 458, 470
CviJI	RGCY	9 cut(s)	89, 108, 157, 302, 355, 468, 479, 510, 595
CviKI_1	RGCY	9 cut(s)	89, 108, 157, 302, 355, 468, 479, 510, 595
CviQI	GTAC	2 cut(s)	536, 613
DpnI	GATC	4 cut(s)	252, 321, 351, 449
DpnII	GATC	4 cut(s)	250, 319, 349, 447
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	260
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	211, 225
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	119, 213
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	5 cut(s)	113, 167, 203, 461, 473
FaiI	YATR	9 cut(s)	38, 111, 138, 165, 201, 362, 459, 471, 630
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	5 cut(s)	109, 163, 199, 457, 469
FauI	CCCGC	2 cut(s)	40, 48
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	303
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	355, 468
HapII	CCGG	4 cut(s)	44, 144, 209, 380
HgaI	GACGC	2 cut(s)	129, 212
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	5 cut(s)	113, 167, 203, 461, 473
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	4 cut(s)	44, 144, 209, 380
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	5 cut(s)	209, 245, 458, 589, 606
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	161, 172, 603
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4V	TGCA	6 cut(s)	94, 199, 368, 434, 491, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
Hsp92II	CATG	5 cut(s)	113, 167, 203, 461, 473
HspAI	GCGC	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	250, 319, 349, 447
LmnI	GCTCC	2 cut(s)	154, 211
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	4 cut(s)	252, 321, 351, 449
MboI	GATC	4 cut(s)	250, 319, 349, 447
MboII	GAAGA	4 cut(s)	277, 286, 391, 400
MfeI	CAATTG	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	6 cut(s)	24, 81, 323, 328, 522, 545
MluNI	TGGCCA	1 cut(s)	468
MnlI	CCTC	8 cut(s)	79, 92, 106, 226, 284, 328, 454, 585
Mox20I	TGGCCA	1 cut(s)	468
Mph1103I	ATGCAT	1 cut(s)	370
MroI	TCCGGA	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	4 cut(s)	44, 144, 209, 380
MspR9I	CCNGG	4 cut(s)	44, 121, 215, 381
MunI	CAATTG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	2 cut(s)	121, 215
MwoI	GCNNNNNNNGC	1 cut(s)	440
NciI	CCSGG	2 cut(s)	44, 381
NdeII	GATC	4 cut(s)	250, 319, 349, 447
NlaIII	CATG	5 cut(s)	113, 167, 203, 461, 473
NlaIV	GGNNCC	2 cut(s)	156, 227
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	370
PagI	TCATGA	1 cut(s)	457
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	119, 213
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	2 cut(s)	119, 213
PspN4I	GGNNCC	2 cut(s)	156, 227
PspPI	GGNCC	2 cut(s)	211, 225
PstI	CTGCAG	1 cut(s)	493
RsaI	GTAC	2 cut(s)	537, 614
RsaNI	GTAC	2 cut(s)	536, 613
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	4 cut(s)	250, 319, 349, 447
Sau96I	GGNCC	2 cut(s)	211, 225
ScrFI	CCNGG	4 cut(s)	44, 121, 215, 381
SetI	ASST	8 cut(s)	117, 122, 172, 295, 304, 339, 465, 614
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	211, 225
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	413, 589
SmoI	CTYRAG	2 cut(s)	413, 589
Sse9I	AATT	6 cut(s)	24, 81, 323, 328, 522, 545
SsiI	CCGC	2 cut(s)	33, 55
StyD4I	CCNGG	4 cut(s)	42, 119, 213, 379
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	622
TaqI	TCGA	1 cut(s)	481
TasI	AATT	6 cut(s)	24, 81, 323, 328, 522, 545
TfiI	GAWTC	1 cut(s)	241
TscAI	CASTG	2 cut(s)	201, 260
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	4 cut(s)	17, 180, 377, 538
TspRI	CASTG	2 cut(s)	201, 260
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	2 cut(s)	211, 225
XapI	RAATTY	2 cut(s)	24, 522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.