Rh1DG393500

Mitochondrial metalloendopeptidase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
61155172 .. 61158341
3170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG393500.1

Sequence Viewer

Length: 1131 bp
ATGGCTAACTACAGACGAGCCAAGCTCGCAATCGACGCCTTTCGCGGCTTCACATCAAGAATCGTAGCTAGACCAGAACCCATCTCCAGAGTCTACTCCACCAAGTCTTCAACTTTGGCCTCAAAACCAGCTAAGTTTTCTGGGTTTTCTCCTCGCTATTCTATTTCACAGAACCCAGTTCCGCAAAACCAACTGAGCCCATTTATCGGTTTTGCCAAGAGATATTATCATGTGGATCGGCGGCAGGTGCAGCATTTCCGGCAAAGAGGTCCGCGCCGGTGGGCTGACTGGTTCAAGGACCCGAGGAGGGCGTTTGTTACTATCGTGGTGGGCGGTGGGGTTTTTATCACTGTGTATTTTGGGAACTTAGAGACTGTACCATACACCAAGCGTAGGCATTTTATAATTCTGTCGACTAATTTGGAGAGGAAACTGGGAGAGCAGCAGTTCGAGGAGTTGAAAGCCGGGTTTAAGGGGAAGATTTTGCCTCCCATACACCCGGAAAGTGTGAGGGTTAGGCTGATTTCCAAGGATATTATTGATGCGTTGAAGAGAGGGTTGAGGCATGATCAGGGGTGGACTGACATGGGGTATGCATCGGAGGAGGTTGACCCGAAATTCGAAGGCCGGGGGAGTGAGAGTGTGCAGGCATTGATGGAGGGTGAGGAGGGGAAGGTGGAGGAGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAAGAAAGGTAAGGATAGTGGTGTTAAGGATGCCACTTCGCATTTGGTTGATTTGAATTGGGAGGTTTTGGTGGTGGATCAGCCGATTGTCAATGCGTTTTGCTTGCCCGGTGGGAAGATAGTGGTCTTCACAGGGTTGCTTAAGCATTTTAGAAGTGATGCCGAGATAGCTACGATAATTGGTCATGAGGTTGGGCATGCTGTGGCTCGACACTCTGCAGAGGGCATCACAAAGAACCTGTGGGTTGCAATCCTGCAACTGCTTCTTTATCAGCTTATTTCGCCTGATTTTGTCAACCCATTATCCAATCTTTTCTTAAGGCTTCCTTTTTCCCGAAGGTACGTTACTGCTGATTATCATTTGCTTACGGATAGAGGATTATGTGCTTTATGA

Protein Analysis

376

Amino Acids

42.9

Weight (kDa)

9.58

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 263 - 338 2.8e-19 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
AarI CACCTGC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 235
AccI GTMKAC 2 cut(s) 93, 413
AccII CGCG 2 cut(s) 45, 274
AciI CCGC 5 cut(s) 45, 182, 241, 272, 333
AclWI GGATC 2 cut(s) 243, 822
AcsI RAATTY 1 cut(s) 617
AcvI CACGTG 1 cut(s) 695
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 2 cut(s) 378, 1079
AfiI CCNNNNNNNGG 3 cut(s) 206, 307, 393
AflII CTTAAG 2 cut(s) 878, 1054
AgsI TTSAA 5 cut(s) 111, 295, 460, 550, 793
AluBI AGCT 5 cut(s) 25, 68, 131, 908, 1012
AluI AGCT 5 cut(s) 25, 68, 131, 908, 1012
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 243, 822
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 2 cut(s) 117, 625
ApeKI GCWGC 2 cut(s) 250, 442
ApoI RAATTY 1 cut(s) 617
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 269, 298
AsuC2I CCSGG 4 cut(s) 466, 500, 629, 846
AsuHPI GGTGA 1 cut(s) 674
AsuII TTCGAA 1 cut(s) 621
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 2 cut(s) 269, 298
BanII GRGCYC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 1066, 1098
BbrPI CACGTG 1 cut(s) 695
BbsI GAAGAC 2 cut(s) 99, 856
BbvI GCAGC 2 cut(s) 262, 454
BccI CCATC 2 cut(s) 89, 649
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 4 cut(s) 466, 500, 629, 846
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 2 cut(s) 10, 954
BfrI CTTAAG 2 cut(s) 878, 1054
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 4 cut(s) 46, 242, 251, 443
BlsI GCNGC 4 cut(s) 47, 243, 252, 444
Bme1390I CCNGG 4 cut(s) 466, 500, 629, 846
Bme18I GGWCC 2 cut(s) 269, 298
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 269, 298
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 4 cut(s) 466, 500, 629, 846
BmrI ACTGGG 2 cut(s) 170, 443
BmsI GCATC 5 cut(s) 532, 605, 757, 886, 972
BmuI ACTGGG 2 cut(s) 170, 443
BpiI GAAGAC 2 cut(s) 99, 856
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BpmI CTGGAG 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 621
BpuMI CCSGG 4 cut(s) 466, 500, 629, 846
BsaAI YACGTR 1 cut(s) 695
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 302, 528, 628
BsaXI ACNNNNNCTCC 4 cut(s) 625, 655, 674, 704
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 307, 393
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 3 cut(s) 176, 293, 438
BseDI CCNNGG 3 cut(s) 302, 528, 628
BseGI GGATG 2 cut(s) 706, 772
BseLI CCNNNNNNNGG 3 cut(s) 206, 307, 393
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 3 cut(s) 176, 293, 438
BseRI GAGGAG 6 cut(s) 141, 319, 467, 617, 680, 695
BseXI GCAGC 2 cut(s) 262, 454
BsgI GTGCAG 2 cut(s) 269, 665
Bsh1236I CGCG 2 cut(s) 45, 274
BshFI GGCC 2 cut(s) 119, 627
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 6 cut(s) 259, 277, 465, 500, 628, 846
BslI CCNNNNNNNGG 3 cut(s) 206, 307, 393
BsmAI GTCTC 1 cut(s) 365
BsnI GGCC 2 cut(s) 119, 627
BsoBI CYCGRG 1 cut(s) 301
Bsp119I TTCGAA 1 cut(s) 621
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 235, 568, 814
BspACI CCGC 5 cut(s) 45, 182, 241, 272, 333
BspANI GGCC 2 cut(s) 119, 627
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 2 cut(s) 45, 274
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 958
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 2 cut(s) 243, 822
BspT104I TTCGAA 1 cut(s) 621
BspTI CTTAAG 2 cut(s) 878, 1054
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 3 cut(s) 176, 293, 438
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 3 cut(s) 302, 528, 628
BssMI GATC 3 cut(s) 235, 568, 814
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 352, 376
Bst6I CTCTTC 1 cut(s) 545
BstACI GRCGYC 1 cut(s) 36
BstAFI CTTAAG 2 cut(s) 878, 1054
BstBAI YACGTR 1 cut(s) 695
BstBI TTCGAA 1 cut(s) 621
BstC8I GCNNGC 4 cut(s) 27, 648, 842, 936
BstDEI CTNAG 3 cut(s) 132, 194, 367
BstF5I GGATG 2 cut(s) 706, 772
BstFNI CGCG 2 cut(s) 45, 274
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 3 cut(s) 238, 571, 817
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 3 cut(s) 235, 568, 814
BstMWI GCNNNNNNNGC 7 cut(s) 26, 35, 247, 250, 259, 905, 1018
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 4 cut(s) 464, 498, 627, 844
BstSFI CTRYAG 2 cut(s) 10, 954
BstUI CGCG 2 cut(s) 45, 274
BstV1I GCAGC 2 cut(s) 262, 454
BstV2I GAAGAC 2 cut(s) 99, 856
BsuRI GGCC 2 cut(s) 119, 627
BtsCI GGATG 2 cut(s) 706, 772
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 4 cut(s) 27, 648, 842, 936
CciI TCATGA 1 cut(s) 922
CfoI GCGC 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 269, 298
CseI GACGC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 377, 1078
CviAII CATG 5 cut(s) 230, 566, 586, 923, 935
CviQI GTAC 2 cut(s) 377, 1078
DdeI CTNAG 3 cut(s) 132, 194, 367
DpnI GATC 3 cut(s) 237, 570, 816
DpnII GATC 3 cut(s) 235, 568, 814
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 269, 298
Eco72I CACGTG 1 cut(s) 695
Eco88I CYCGRG 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 528
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 5 cut(s) 233, 569, 589, 926, 938
FalI AAGNNNNNCTT 2 cut(s) 1048, 1080
FatI CATG 5 cut(s) 229, 565, 585, 922, 934
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 2 cut(s) 93, 413
Fnu4HI GCNGC 4 cut(s) 46, 242, 251, 443
FokI GGATG 2 cut(s) 713, 779
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 4 cut(s) 46, 242, 251, 443
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 275
GluI GCNGC 4 cut(s) 46, 242, 251, 443
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 2 cut(s) 119, 627
HapII CCGG 6 cut(s) 259, 277, 465, 500, 628, 846
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 5 cut(s) 233, 569, 589, 926, 938
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HincII GTYRAC 3 cut(s) 414, 610, 1033
HindII GTYRAC 3 cut(s) 414, 610, 1033
HinfI GANTC 3 cut(s) 60, 90, 706
HpaII CCGG 6 cut(s) 259, 277, 465, 500, 628, 846
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 5 cut(s) 94, 414, 579, 610, 1033
Hpy188I TCNGA 1 cut(s) 601
Hpy188III TCNNGA 5 cut(s) 57, 87, 710, 923, 1071
Hpy8I GTNNAC 5 cut(s) 94, 414, 579, 610, 1033
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 617, 667, 1068
HpyCH4III ACNGT 2 cut(s) 352, 376
HpyCH4IV ACGT 2 cut(s) 694, 1080
HpyCH4V TGCA 6 cut(s) 250, 596, 646, 956, 986, 994
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 35, 247, 250, 259, 905, 1018
HpyF3I CTNAG 3 cut(s) 132, 194, 367
HpySE526I ACGT 2 cut(s) 694, 1080
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 5 cut(s) 233, 569, 589, 926, 938
HspAI GCGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 3 cut(s) 235, 568, 814
Lsp1109I GCAGC 2 cut(s) 262, 454
LweI GCATC 5 cut(s) 532, 605, 757, 886, 972
MaeI CTAG 1 cut(s) 69
MaeII ACGT 2 cut(s) 694, 1080
MaeIII GTNAC 3 cut(s) 316, 690, 1081
MalI GATC 3 cut(s) 237, 570, 816
MboI GATC 3 cut(s) 235, 568, 814
MboII GAAGA 6 cut(s) 99, 490, 562, 751, 856, 865
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 6 cut(s) 405, 418, 617, 685, 793, 915
MlyI GAGTC 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 598
MseI TTAA 4 cut(s) 471, 762, 879, 1055
MspCI CTTAAG 2 cut(s) 878, 1054
MspI CCGG 6 cut(s) 259, 277, 465, 500, 628, 846
MspR9I CCNGG 4 cut(s) 466, 500, 629, 846
MvnI CGCG 2 cut(s) 45, 274
MwoI GCNNNNNNNGC 7 cut(s) 26, 35, 247, 250, 259, 905, 1018
NciI CCSGG 4 cut(s) 466, 500, 629, 846
NdeII GATC 3 cut(s) 235, 568, 814
NlaIII CATG 5 cut(s) 233, 569, 589, 926, 938
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 925
NmuCI GTSAC 1 cut(s) 690
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 1 cut(s) 938
NspV TTCGAA 1 cut(s) 621
PaeI GCATGC 1 cut(s) 938
PagI TCATGA 1 cut(s) 922
PaqCI CACCTGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 60, 706
PkrI GCNGC 4 cut(s) 47, 243, 252, 444
PleI GAGTC 1 cut(s) 98
PmaCI CACGTG 1 cut(s) 695
PmlI CACGTG 1 cut(s) 695
PpsI GAGTC 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 695
PpuMI RGGWCCY 1 cut(s) 298
PsiI TTATAA 1 cut(s) 404
Psp5II RGGWCCY 1 cut(s) 298
PspCI CACGTG 1 cut(s) 695
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 269, 298
PspPPI RGGWCCY 1 cut(s) 298
PstI CTGCAG 1 cut(s) 958
RsaI GTAC 2 cut(s) 378, 1079
RsaNI GTAC 2 cut(s) 377, 1078
SalI GTCGAC 1 cut(s) 412
SaqAI TTAA 4 cut(s) 471, 762, 879, 1055
SatI GCNGC 4 cut(s) 46, 242, 251, 443
Sau3AI GATC 3 cut(s) 235, 568, 814
Sau96I GGNCC 2 cut(s) 269, 298
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 4 cut(s) 466, 500, 629, 846
SduI GDGCHC 1 cut(s) 200
SfaNI GCATC 5 cut(s) 532, 605, 757, 886, 972
SfcI CTRYAG 2 cut(s) 10, 954
SfuI TTCGAA 1 cut(s) 621
SgrAI CRCCGGYG 1 cut(s) 276
SinI GGWCC 2 cut(s) 269, 298
SmlI CTYRAG 2 cut(s) 878, 1054
SmoI CTYRAG 2 cut(s) 878, 1054
SphI GCATGC 1 cut(s) 938
Sse9I AATT 6 cut(s) 405, 418, 617, 685, 793, 915
SsiI CCGC 5 cut(s) 45, 182, 241, 272, 333
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 4 cut(s) 464, 498, 627, 844
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 2 cut(s) 352, 376
TaiI ACGT 2 cut(s) 697, 1083
TaqI TCGA 5 cut(s) 33, 413, 450, 621, 946
TasI AATT 6 cut(s) 405, 418, 617, 685, 793, 915
TauI GCSGC 2 cut(s) 48, 244
TfiI GAWTC 2 cut(s) 60, 706
Tru1I TTAA 4 cut(s) 471, 762, 879, 1055
Tru9I TTAA 4 cut(s) 471, 762, 879, 1055
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 690
TseI GCWGC 2 cut(s) 250, 442
Tsp45I GTSAC 1 cut(s) 690
TspGWI ACGGA 1 cut(s) 1121
TspRI CASTG 1 cut(s) 355
Vha464I CTTAAG 2 cut(s) 878, 1054
VpaK11BI GGWCC 2 cut(s) 269, 298
XapI RAATTY 1 cut(s) 617
XceI RCATGY 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 778
XmiI GTMKAC 2 cut(s) 93, 413
XspI CTAG 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.