Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

24772355 .. 24775017

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG238800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGGGCAAGTATGGGTTTGTGGAGGGTAGGAGGAAAAGTGGATTTGAGGGAGGCGGTGATTTTGGTAGCCGGAGAACGAAGAAGAAGAAGATTGAGTCGATTTCTAAGCCTGGGGATACATGCAAGGGGTCGTTAGATCATGTGAAGTTGAACAGCGCTACAGATGATGGTTATGTTTGGGACCTAACATTAGAGTCCTCGGCTGGAAATGTCTATGTTGGGGGCCCCAAGTTCAATGGCACCTTGACCTATCTTAGGCTTGGAATTGATGGAAACATCAGGCTTCACGCTTACTATGGCCAGGTAAATAAATGGGAGCGGACCTTCACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

112

Amino Acids

12.37

Weight (kDa)

9.52

Isoelectric Point (pI)

28.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	322
AciI	CCGC	2 cut(s)	57, 322
AcoI	YGGCCR	1 cut(s)	301
AfeI	AGCGCT	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	154, 238
AjnI	CCWGG	2 cut(s)	112, 303
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	2 cut(s)	226, 301
ApaI	GGGCCC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	4 cut(s)	184, 226, 227, 324
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	2 cut(s)	184, 324
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	230
BccI	CCATC	2 cut(s)	164, 266
BciT130I	CCWGG	2 cut(s)	114, 305
BciVI	GTATCC	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	112
Bme1390I	CCNGG	2 cut(s)	114, 305
Bme18I	GGWCC	2 cut(s)	184, 324
BmgT120I	GGNCC	4 cut(s)	184, 226, 227, 324
BmiI	GGNNCC	5 cut(s)	185, 227, 228, 229, 244
BmrFI	CCNGG	2 cut(s)	114, 305
BsaJI	CCNNGG	2 cut(s)	113, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	114, 305
BseDI	CCNNGG	2 cut(s)	113, 201
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	230
BshFI	GGCC	2 cut(s)	228, 303
BshNI	GGYRCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	228, 303
Bsp120I	GGGCCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	2 cut(s)	57, 322
BspANI	GGCC	2 cut(s)	228, 303
BspLI	GGNNCC	5 cut(s)	185, 227, 228, 229, 244
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	113, 201
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	114, 305
BstDEI	CTNAG	2 cut(s)	108, 257
BstENI	CCTNNNNNAGG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstNI	CCWGG	2 cut(s)	114, 305
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	112, 303
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	228, 303
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	4 cut(s)	184, 226, 227, 324
CviAII	CATG	2 cut(s)	123, 143
CviJI	RGCY	7 cut(s)	72, 112, 206, 228, 262, 286, 303
CviKI_1	RGCY	7 cut(s)	72, 112, 206, 228, 262, 286, 303
DdeI	CTNAG	2 cut(s)	108, 257
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	184, 324
Eco47III	AGCGCT	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	256
EcoO109I	RGGNCCY	3 cut(s)	184, 226, 227
EcoRII	CCWGG	2 cut(s)	112, 303
EcoT38I	GRGCYC	1 cut(s)	230
FaeI	CATG	2 cut(s)	126, 146
FaiI	YATR	6 cut(s)	15, 124, 144, 177, 219, 300
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	122, 142
FriOI	GRGCYC	1 cut(s)	230
GlaI	GCGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	228, 303
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	126, 146
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	98, 197
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	126
HpyF3I	CTNAG	2 cut(s)	108, 257
Hsp92II	CATG	2 cut(s)	126, 146
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	7 cut(s)	86, 99, 126, 192, 268, 290, 317
MalI	GATC	1 cut(s)	141
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	94, 97, 100, 103
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	1 cut(s)	267
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	2 cut(s)	107, 206
MnlI	CCTC	5 cut(s)	19, 27, 43, 47, 211
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	114, 305
MvaI	CCWGG	2 cut(s)	114, 305
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	126, 146
NlaIV	GGNNCC	5 cut(s)	185, 227, 228, 229, 244
NmeAIII	GCCGAG	1 cut(s)	182
NspI	RCATGY	1 cut(s)	126
PleI	GAGTC	2 cut(s)	106, 205
PpsI	GAGTC	2 cut(s)	106, 205
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	112, 303
PspGI	CCWGG	2 cut(s)	112, 303
PspN4I	GGNNCC	5 cut(s)	185, 227, 228, 229, 244
PspOMI	GGGCCC	1 cut(s)	226
PspPI	GGNCC	4 cut(s)	184, 226, 227, 324
PspPPI	RGGWCCY	1 cut(s)	184
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	4 cut(s)	184, 226, 227, 324
SchI	GAGTC	2 cut(s)	107, 206
ScrFI	CCNGG	2 cut(s)	114, 305
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	5 cut(s)	189, 248, 254, 309, 329
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	184, 324
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	2 cut(s)	57, 322
StyD4I	CCNGG	2 cut(s)	112, 303
TaqI	TCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	184, 324
XagI	CCTNNNNNAGG	1 cut(s)	256
XceI	RCATGY	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.