Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

25453089 .. 25455905

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG215900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAGCAGATCTGTATAGCAACAGCAAATTTAGACACACTGGGACAAGATGGAAAAGAGAAGGGGTCGTTAGATCATGTGAAGTTGAACAGCGCTACAGATGATGGTTATGTTTGGGACCTAACATTAGAGTCCTCGGCTGGAAATGTCTATGTTGGGGGCCCCAAGTTCAATGGCACCTTGACCTATCTTAGGCTTGGAATTGATGGAAACATCAGGCTTCACGCTTACTATGGCCAGGTAAATAAATGGGAGCAGACCTTCACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

90

Amino Acids

9.91

Weight (kDa)

5.48

Isoelectric Point (pI)

20.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	28
AfeI	AGCGCT	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	88, 172
AjnI	CCWGG	1 cut(s)	237
Aor51HI	AGCGCT	1 cut(s)	94
AoxI	GGCC	2 cut(s)	160, 235
ApaI	GGGCCC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	118, 160, 161
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	164
BccI	CCATC	3 cut(s)	44, 98, 200
BciT130I	CCWGG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	96
BglII	AGATCT	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	118, 160, 161
BmiI	GGNNCC	5 cut(s)	119, 161, 162, 163, 178
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	164
BshFI	GGCC	2 cut(s)	162, 237
BshNI	GGYRCC	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	57, 131
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	2 cut(s)	57, 131
BsnI	GGCC	2 cut(s)	162, 237
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	9, 73
BspANI	GGCC	2 cut(s)	162, 237
BspLI	GGNNCC	5 cut(s)	119, 161, 162, 163, 178
BspT107I	GGYRCC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	9, 73
Bst2UI	CCWGG	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	12, 76
BstMBI	GATC	2 cut(s)	9, 73
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	162, 237
BtsIMutI	CAGTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	118, 160, 161
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	5 cut(s)	140, 162, 196, 220, 237
CviKI_1	RGCY	5 cut(s)	140, 162, 196, 220, 237
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	2 cut(s)	11, 75
DpnII	GATC	2 cut(s)	9, 73
EaeI	YGGCCR	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoO109I	RGGNCCY	3 cut(s)	118, 160, 161
EcoRII	CCWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	164
FaeI	CATG	1 cut(s)	80
FaiI	YATR	5 cut(s)	17, 78, 111, 153, 234
FaqI	GGGAC	2 cut(s)	57, 131
FatI	CATG	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	164
GlaI	GCGC	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	162, 237
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	55, 271
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	9, 73
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	5 cut(s)	26, 126, 202, 224, 251
MalI	GATC	2 cut(s)	11, 75
MboI	GATC	2 cut(s)	9, 73
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	2 cut(s)	28, 201
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	9, 73
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	5 cut(s)	119, 161, 162, 163, 178
NmeAIII	GCCGAG	1 cut(s)	116
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	5 cut(s)	119, 161, 162, 163, 178
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	3 cut(s)	118, 160, 161
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	9, 73
Sau96I	GGNCC	3 cut(s)	118, 160, 161
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	5 cut(s)	123, 182, 188, 243, 263
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	2 cut(s)	28, 201
StyD4I	CCNGG	1 cut(s)	237
TasI	AATT	2 cut(s)	28, 201
TscAI	CASTG	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	118
XagI	CCTNNNNNAGG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.