Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

63351078 .. 63352437

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATGAAAATAGAGGGAACGATAGGCAGAACATTGCCTGATGGAGACTTGCAAACTAGGCGTGTTAGGCGCATTGGCAATGAAATAACTCAGGGGTTGATGAGAGGCATAACTAGGGAGGACCAAGAGAAGGGACGTCGGTGCGGTGCGGTTGCTGCGCATGCATACACATTCGACGGATTGTGCGACCTTTTATTCACTCTTCCTTTTGAACGAAGGAGAGAACTGGAGGCGGATTACATTGGGCTGTTGTTGCTTGCTTCGGCCGGCTATGATCCTAGGGTTGCTCTAGATGTGTGCCAGAAGTTCGATAAGCTTGCTGGTGGATCTCCAAACCAGAAAGATTATCTTTCTACCCATCCAACCGGGAAAAAGAGAGCTGAAAAGCTGGCTCAATCTCGCGTCATGGAAGAAGCACTCTCTATATACCGGGAAGTAGAAGCTGGACGAGGGGCCGGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

154

Amino Acids

17.14

Weight (kDa)

8.82

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	42 - 131	3e-10	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	139
Acc16I	TGCGCA	1 cut(s)	159
AccII	CGCG	1 cut(s)	402
AciI	CCGC	3 cut(s)	144, 149, 233
AclWI	GGATC	2 cut(s)	269, 334
AcoI	YGGCCR	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	4 cut(s)	316, 380, 388, 443
AluI	AGCT	4 cut(s)	316, 380, 388, 443
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	269, 334
AoxI	GGCC	2 cut(s)	264, 453
ApeKI	GCWGC	1 cut(s)	155
AspA2I	CCTAGG	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	72, 160
AspS9I	GGNCC	2 cut(s)	121, 453
AsuC2I	CCSGG	3 cut(s)	367, 431, 457
AvaII	GGWCC	1 cut(s)	121
AvrII	CCTAGG	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	35, 366
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BcnI	CCSGG	3 cut(s)	367, 431, 457
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	4 cut(s)	57, 114, 279, 290
BisI	GCNGC	1 cut(s)	156
BlnI	CCTAGG	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	3 cut(s)	367, 431, 457
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 453
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	3 cut(s)	367, 431, 457
BpmI	CTGGAG	1 cut(s)	248
BpuMI	CCSGG	3 cut(s)	367, 431, 457
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	32, 85
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	2 cut(s)	32, 85
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	231
BseX3I	CGGCCG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	266, 455
BsiEI	CGRYCG	1 cut(s)	267
BsiSI	CCGG	4 cut(s)	267, 366, 430, 456
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	266, 455
Bsp143I	GATC	2 cut(s)	274, 326
BspACI	CCGC	3 cut(s)	144, 149, 233
BspANI	GGCC	2 cut(s)	266, 455
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	269, 334
BsrDI	GCAATG	2 cut(s)	32, 85
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	274, 326
BssNI	GRCGYC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	136
BstC8I	GCNNGC	5 cut(s)	162, 258, 268, 318, 390
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	2 cut(s)	72, 160
BstKTI	GATC	2 cut(s)	277, 329
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	274, 326
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 67, 155, 161, 253
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	3 cut(s)	365, 429, 455
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BstZI	CGGCCG	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	266, 455
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	5 cut(s)	162, 258, 268, 318, 390
CfoI	GCGC	2 cut(s)	72, 160
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	121, 453
CseI	GACGC	1 cut(s)	391
CviAII	CATG	2 cut(s)	161, 406
CviJI	RGCY	9 cut(s)	247, 266, 270, 316, 380, 388, 392, 443, 455
CviKI_1	RGCY	9 cut(s)	247, 266, 270, 316, 380, 388, 392, 443, 455
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	2 cut(s)	276, 328
DpnII	GATC	2 cut(s)	274, 326
EaeI	YGGCCR	1 cut(s)	264
EagI	CGGCCG	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	248
EclXI	CGGCCG	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	121
Eco52I	CGGCCG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	2 cut(s)	164, 409
FaiI	YATR	7 cut(s)	110, 162, 166, 273, 407, 425, 427
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	2 cut(s)	160, 405
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	4 cut(s)	57, 114, 279, 290
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	2 cut(s)	71, 159
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	266, 455
HapII	CCGG	4 cut(s)	267, 366, 430, 456
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	2 cut(s)	72, 160
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	164, 409
Hin6I	GCGC	2 cut(s)	70, 158
HinP1I	GCGC	2 cut(s)	70, 158
HindIII	AAGCTT	1 cut(s)	314
HpaII	CCGG	4 cut(s)	267, 366, 430, 456
Hpy188III	TCNNGA	1 cut(s)	290
Hpy99I	CGWCG	2 cut(s)	141, 179
HpyAV	CCTTC	2 cut(s)	124, 210
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	52, 164
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 67, 155, 161, 253
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	136
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	164, 409
HspAI	GCGC	2 cut(s)	70, 158
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	274, 326
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	4 cut(s)	57, 114, 279, 290
MaeII	ACGT	1 cut(s)	136
MalI	GATC	2 cut(s)	276, 328
MboI	GATC	2 cut(s)	274, 326
MboII	GAAGA	2 cut(s)	194, 422
MflI	RGATCY	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	5 cut(s)	7, 98, 112, 223, 443
Mph1103I	ATGCAT	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	266
MspI	CCGG	4 cut(s)	267, 366, 430, 456
MspR9I	CCNGG	3 cut(s)	367, 431, 457
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	5 cut(s)	58, 67, 155, 161, 253
NaeI	GCCGGC	1 cut(s)	268
NciI	CCSGG	3 cut(s)	367, 431, 457
NdeII	GATC	2 cut(s)	274, 326
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	164, 409
NlaIV	GGNNCC	1 cut(s)	454
NsbI	TGCGCA	1 cut(s)	159
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	121, 453
PsuI	RGATCY	1 cut(s)	326
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	274, 326
Sau96I	GGNCC	2 cut(s)	121, 453
ScrFI	CCNGG	3 cut(s)	367, 431, 457
SetI	ASST	6 cut(s)	139, 192, 318, 382, 390, 445
SinI	GGWCC	1 cut(s)	121
SphI	GCATGC	1 cut(s)	164
SsiI	CCGC	3 cut(s)	144, 149, 233
SspMI	CTAG	4 cut(s)	57, 114, 279, 290
StyD4I	CCNGG	3 cut(s)	365, 429, 455
StyI	CCWWGG	1 cut(s)	278
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	174, 309
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	20, 96
TspGWI	ACGGA	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	121
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	1 cut(s)	164
XmaJI	CCTAGG	1 cut(s)	278
XspI	CTAG	4 cut(s)	57, 114, 279, 290
ZraI	GACGTC	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.