Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

16007206 .. 16008733

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG183600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTTCACCAAAATAGCAGCATATGGCAATGATGGGAATGAGGGATCAGACTGTGTGCATCCGTTTGTAATTTTGCAGAATTGTATTAAAGCTAATCCAGATGCCTTTTCTAACAACATTTCAGAAGAAGATGGAGTTAAGAAGGAGGAAAACCTGACCCAGGATTACAAAATTATCCCACCCCTATGGTCCAAAGAATCCCCTAGTCCAAAATCCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006605 GO:0006625 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072662 GO:0072663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

74

Amino Acids

8.21

Weight (kDa)

4.94

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	92, 220
AluI	AGCT	2 cut(s)	92, 220
AlwI	GGATC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	2 cut(s)	26, 125
BciT130I	CCWGG	1 cut(s)	161
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	67, 91
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	189
CviJI	RGCY	2 cut(s)	92, 220
CviKI_1	RGCY	2 cut(s)	92, 220
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	159
FaiI	YATR	3 cut(s)	22, 24, 187
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	49, 124
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	58, 76
Kzo9I	GATC	1 cut(s)	44
LpnPI	CCDG	4 cut(s)	111, 146, 167, 173
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	2 cut(s)	67, 91
MaeI	CTAG	1 cut(s)	204
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	2 cut(s)	137, 140
MluCI	AATT	3 cut(s)	69, 79, 171
MnlI	CCTC	2 cut(s)	34, 139
MseI	TTAA	2 cut(s)	87, 138
MslI	CAYNNNNRTG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	87, 138
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	3 cut(s)	94, 156, 222
SfaNI	GCATC	2 cut(s)	67, 91
SfcI	CTRYAG	1 cut(s)	221
SgeI	CNNG	5 cut(s)	110, 166, 172, 173, 216
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	3 cut(s)	69, 79, 171
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	53
TasI	AATT	3 cut(s)	69, 79, 171
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	87, 138
Tru9I	TTAA	2 cut(s)	87, 138
TseI	GCWGC	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	158
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.