Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006244.1

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

184126 .. 185504

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006244.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgtttgcggtgcctgtaattcactttttctgtctgaaaaattgggattatggttttttgttgaatccccaaattgtgctgaagagattggcggtggtttgggttcggcaagctaaagaccatctcgcttcaatttgtcatcagtcccttcaatttcaagtccttcacctccatcagtccatcgtttccttatctctttcatcggttattctcttagccgagccttcctctcgcaagacacgctctcaaatactcggctcagatgctcttcaagctccgaatctccaggctctctccctcactcttctgttctgttcgcgagtcatggtgggtcgagccctgaattccgaccaccttggacagcccatacgagccggtgaccgtgtcactagacctcaatttgctggacagagatcccagagaggtcgactggaattcgaaggtcgggggagtaagactgtgcagtcattgatggagggtgagaaggggaaaatggaggggaattggtcacgtgaggatgagattcttgatgataagtggattgagcatagtaggaagaagggtaaggatagtggtgttaaggatgccacttcgcatttggttgatttggattgggagattttggtggtggatgagccgaatgtcagtgtgctttgcttgccgggtgggaagattgtggtctgcatagggttgctcaagcattttagaagtgatatatgccgatatagctatgataattggtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

248

Amino Acids

27.97

Weight (kDa)

8.92

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	463
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	427
AccII	CGCG	1 cut(s)	319
AciI	CCGC	2 cut(s)	8, 92
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	2 cut(s)	343, 434
AcuI	CTGAAG	1 cut(s)	101
AcvI	CACGTG	1 cut(s)	512
AgsI	TTSAA	5 cut(s)	64, 132, 152, 158, 272
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	3 cut(s)	113, 275, 729
AluI	AGCT	3 cut(s)	113, 275, 729
AlwI	GGATC	1 cut(s)	408
ApoI	RAATTY	2 cut(s)	343, 434
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	3 cut(s)	158, 389, 491
AsuII	TTCGAA	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	340
BbrPI	CACGTG	1 cut(s)	512
BccI	CCATC	4 cut(s)	129, 180, 188, 466
BciT130I	CCWGG	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	663
BfaI	CTAG	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	287, 663
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	287, 663
BmsI	GCATC	2 cut(s)	253, 574
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	663
BsaAI	YACGTR	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	3 cut(s)	523, 589, 637
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	435
BsgI	GTGCAG	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	375, 662
BslFI	GGGAC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	413
Bsp68I	TCGCGA	1 cut(s)	319
BspACI	CCGC	2 cut(s)	8, 92
BspCNI	CTCAG	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	743
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	273
BspT104I	TTCGAA	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	383, 460
Bst6I	CTCTTC	3 cut(s)	77, 273, 309
BstBAI	YACGTR	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	111, 659
BstDEI	CTNAG	2 cut(s)	214, 259
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	523, 589, 637
BstFNI	CGCG	1 cut(s)	319
BstKTI	GATC	1 cut(s)	416
BstMBI	GATC	1 cut(s)	413
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 272, 658, 726
BstNI	CCWGG	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	285, 661
BstUI	CGCG	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BtsCI	GGATG	3 cut(s)	523, 589, 637
BtsIMutI	CAGTG	1 cut(s)	652
BtuMI	TCGCGA	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	111, 659
CciI	TCATGA	1 cut(s)	743
Cfr10I	RCCGGY	1 cut(s)	374
CviAII	CATG	2 cut(s)	325, 744
DdeI	CTNAG	2 cut(s)	214, 259
DpnI	GATC	1 cut(s)	415
DpnII	GATC	1 cut(s)	413
DrdI	GACNNNNNNGTC	1 cut(s)	463
DseDI	GACNNNNNNGTC	1 cut(s)	463
Eam1104I	CTCTTC	3 cut(s)	77, 273, 309
EarI	CTCTTC	3 cut(s)	77, 273, 309
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	512
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRI	GAATTC	2 cut(s)	343, 434
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	328, 747
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	2 cut(s)	324, 743
FblI	GTMKAC	1 cut(s)	427
FokI	GGATG	3 cut(s)	530, 596, 644
FriOI	GRGCYC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	269
HapII	CCGG	2 cut(s)	375, 662
Hin1II	CATG	2 cut(s)	328, 747
HincII	GTYRAC	1 cut(s)	428
HindII	GTYRAC	1 cut(s)	428
HinfI	GANTC	4 cut(s)	64, 280, 321, 523
HpaII	CCGG	2 cut(s)	375, 662
HphI	GGTGA	3 cut(s)	158, 389, 491
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	4 cut(s)	36, 262, 279, 349
Hpy188III	TCNNGA	3 cut(s)	318, 527, 744
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	6 cut(s)	158, 173, 234, 434, 478, 553
HpyCH4III	ACNGT	2 cut(s)	383, 460
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	2 cut(s)	463, 684
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 272, 658, 726
HpyF3I	CTNAG	2 cut(s)	214, 259
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	2 cut(s)	328, 747
Kzo9I	GATC	1 cut(s)	413
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	27, 272, 299, 353, 388, 390, 416, 431, 675
LweI	GCATC	2 cut(s)	253, 574
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	3 cut(s)	377, 385, 507
MalI	GATC	1 cut(s)	415
MboI	GATC	1 cut(s)	413
MboII	GAAGA	5 cut(s)	94, 260, 296, 568, 682
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	8 cut(s)	179, 238, 308, 405, 416, 469, 490, 508
MseI	TTAA	1 cut(s)	579
MspI	CCGG	2 cut(s)	375, 662
MspR9I	CCNGG	2 cut(s)	287, 663
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	4 cut(s)	240, 272, 658, 726
NciI	CCSGG	1 cut(s)	663
NdeII	GATC	1 cut(s)	413
NlaIII	CATG	2 cut(s)	328, 747
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	2 cut(s)	234, 244
NmuCI	GTSAC	3 cut(s)	377, 385, 507
NruI	TCGCGA	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	438
PagI	TCATGA	1 cut(s)	743
PciSI	GCTCTTC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	64, 280, 523
PflFI	GACNNNGTC	1 cut(s)	383
PleI	GAGTC	1 cut(s)	329
PmaCI	CACGTG	1 cut(s)	512
PmlI	CACGTG	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	285
PspCI	CACGTG	1 cut(s)	512
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	413
PsyI	GACNNNGTC	1 cut(s)	383
RruI	TCGCGA	1 cut(s)	319
SalI	GTCGAC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	579
Sau3AI	GATC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	287, 663
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	9 cut(s)	115, 171, 277, 357, 397, 427, 445, 514, 731
SfaNI	GCATC	2 cut(s)	253, 574
SfuI	TTCGAA	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SsiI	CCGC	2 cut(s)	8, 92
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	2 cut(s)	285, 661
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	383, 460
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	3 cut(s)	334, 427, 438
TfiI	GAWTC	3 cut(s)	64, 280, 523
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	3 cut(s)	377, 385, 507
Tsp45I	GTSAC	3 cut(s)	377, 385, 507
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	652
Tth111I	GACNNNGTC	1 cut(s)	383
XapI	RAATTY	2 cut(s)	343, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	427
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.