Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

24870383 .. 24872124

Gene Structure 1742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCTTGGGTTTGGGAGGCCAACCAGGGAAATCCGGTTGGCGAAAATGCCACCTTCTCGTTGGGGACCGATTGTAACCTCGTCTTGGCCAAAGCTGAAGCCACTCCCCGGTTGGCGAAAATGCCACCTTCTCGTGGAGGACTGATGGTAACCTTGTCCTGGTCAAAGCCAATGGCCGAGTGGCTTGGTAAACCAACACTGCCAACAAAGAGCAACAACTCCCCAAAGCCATTGCTCTACTCTCAACTGATTACCATTCAGAAGGGGTCGTTAGATCATGTGAAGTTGAACAGCGCTACAGATGATGGTTATGTTTGGGACCTAACATTAGAGTCCTCGGCTGGAAATGTCTATGTTGGGGGCCCCAAGTTCAATGGCACCTTGACCTATCTTAGGCTTGGAATTGATGGAAACATCAGGCTTCACGCTTACTATGGCCAGAAAGGCGGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

151

Amino Acids

16.35

Weight (kDa)

9.01

Isoelectric Point (pI)

24.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AciI	CCGC	1 cut(s)	447
AcoI	YGGCCR	3 cut(s)	87, 174, 436
AcuI	CTGAAG	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	295
AfiI	CCNNNNNNNGG	5 cut(s)	85, 108, 134, 159, 393
AgsI	TTSAA	2 cut(s)	289, 373
AjnI	CCWGG	2 cut(s)	24, 158
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	5 cut(s)	18, 87, 174, 361, 436
ApaI	GGGCCC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	4 cut(s)	66, 319, 361, 362
AsuC2I	CCSGG	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	66, 319
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	2 cut(s)	89, 438
BanI	GGYRCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	132
BccI	CCATC	3 cut(s)	139, 299, 401
BciT130I	CCWGG	2 cut(s)	26, 160
BcnI	CCSGG	1 cut(s)	109
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	297
BglI	GCCNNNNNGGC	1 cut(s)	444
Bme1390I	CCNGG	3 cut(s)	26, 109, 160
Bme18I	GGWCC	2 cut(s)	66, 319
BmgT120I	GGNCC	4 cut(s)	66, 319, 361, 362
BmiI	GGNNCC	6 cut(s)	67, 320, 362, 363, 364, 379
BmrFI	CCNGG	3 cut(s)	26, 109, 160
BpuMI	CCSGG	1 cut(s)	109
BsaJI	CCNNGG	4 cut(s)	5, 25, 107, 336
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 108, 134, 159, 393
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	26, 160
BseDI	CCNNGG	4 cut(s)	5, 25, 107, 336
BseLI	CCNNNNNNNGG	5 cut(s)	85, 108, 134, 159, 393
BseMI	GCAATG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	365
BshFI	GGCC	5 cut(s)	20, 89, 176, 363, 438
BshNI	GGYRCC	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	35, 109
BslFI	GGGAC	2 cut(s)	79, 332
BslI	CCNNNNNNNGG	5 cut(s)	85, 108, 134, 159, 393
BsmFI	GGGAC	2 cut(s)	79, 332
BsnI	GGCC	5 cut(s)	20, 89, 176, 363, 438
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	5 cut(s)	20, 89, 176, 363, 438
BspLI	GGNNCC	6 cut(s)	67, 320, 362, 363, 364, 379
BspT107I	GGYRCC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	230
BssECI	CCNNGG	4 cut(s)	5, 25, 107, 336
BssMI	GATC	1 cut(s)	274
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	5
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	26, 160
Bst4CI	ACNGT	1 cut(s)	453
BstDEI	CTNAG	1 cut(s)	392
BstEII	GGTNACC	1 cut(s)	148
BstENI	CCTNNNNNAGG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	2 cut(s)	26, 160
BstPI	GGTNACC	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	24, 107, 158
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	365
BsuRI	GGCC	5 cut(s)	20, 89, 176, 363, 438
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	4 cut(s)	66, 319, 361, 362
CviAII	CATG	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EaeI	YGGCCR	3 cut(s)	87, 174, 436
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	66, 319
Eco47III	AGCGCT	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	117
Eco91I	GGTNACC	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	391
EcoO109I	RGGNCCY	3 cut(s)	319, 361, 362
EcoO65I	GGTNACC	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	24, 158
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	281
FaiI	YATR	4 cut(s)	279, 312, 354, 435
FaqI	GGGAC	2 cut(s)	79, 332
FatI	CATG	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	365
GlaI	GCGC	1 cut(s)	295
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	5 cut(s)	20, 89, 176, 363, 438
HapII	CCGG	2 cut(s)	35, 109
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	2 cut(s)	35, 109
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	261
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	64, 138, 256
HpyCH4III	ACNGT	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	392
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	11, 38, 48, 122, 145, 172, 327, 403, 452
MaeIII	GTNAC	2 cut(s)	74, 148
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	365
MlsI	TGGCCA	2 cut(s)	89, 438
MluCI	AATT	1 cut(s)	402
MluNI	TGGCCA	2 cut(s)	89, 438
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	4 cut(s)	10, 89, 131, 346
Mox20I	TGGCCA	2 cut(s)	89, 438
MscI	TGGCCA	2 cut(s)	89, 438
Msp20I	TGGCCA	2 cut(s)	89, 438
MspI	CCGG	2 cut(s)	35, 109
MspR9I	CCNGG	3 cut(s)	26, 109, 160
MvaI	CCWGG	2 cut(s)	26, 160
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	6 cut(s)	67, 320, 362, 363, 364, 379
NmeAIII	GCCGAG	2 cut(s)	202, 317
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	24, 158
PspEI	GGTNACC	1 cut(s)	148
PspGI	CCWGG	2 cut(s)	24, 158
PspN4I	GGNNCC	6 cut(s)	67, 320, 362, 363, 364, 379
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	4 cut(s)	66, 319, 361, 362
PspPPI	RGGWCCY	1 cut(s)	319
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	4 cut(s)	66, 319, 361, 362
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	3 cut(s)	26, 109, 160
SduI	GDGCHC	1 cut(s)	365
SetI	ASST	8 cut(s)	56, 81, 97, 130, 155, 324, 383, 389
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	2 cut(s)	66, 319
Sse9I	AATT	1 cut(s)	402
SsiI	CCGC	1 cut(s)	447
StyD4I	CCNGG	3 cut(s)	24, 107, 158
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	453
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	1 cut(s)	402
TscAI	CASTG	1 cut(s)	204
TspRI	CASTG	1 cut(s)	204
VpaK11BI	GGWCC	2 cut(s)	66, 319
XagI	CCTNNNNNAGG	1 cut(s)	391
XcmI	CCANNNNNNNNNTGG	3 cut(s)	58, 109, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.