Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000554.1

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

206045 .. 206763

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000554.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggctaactacagacgagccaagctcgcaatcgatgcctttcgcggcttcacatcaagaatcgtagctagaccagaacccatctccagagtctactccaccaagtcttcaactttggcctcaaaaccagctaagttttctgggttttctcctccctattctcttttacagaacccagttccgcaaaaccaattgagcccatttctcggttttgccaacagatattatcatgtggatcggcggcaggtgcagcatttccggaaaagaggtccgcgccggtgggctgactggttcaaggacccgaggagggcgtttgttactatcgtggtgggcggtggggtttttatcacagtgtattttgggaacttagagactgtaccatacaccaagcgtaggcattttgtaattctgtcgactaatttggagaggaagctgggagagcagcagttcgaggagttgaaagccgggtttaaggggaagattttgcctcctatacacccggaaagtgtgagggttaggctgatttccaaggatattattgatgcgttgaagagagggttgaggcatgatcaggggtggactgacatggggtatgcatcggaggaggttgacccgaaattcgaaggccgggggatggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

213

Amino Acids

24.56

Weight (kDa)

10.37

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccI	GTMKAC	2 cut(s)	93, 413
AccII	CGCG	2 cut(s)	45, 274
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	5 cut(s)	45, 182, 241, 272, 333
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	617
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	4 cut(s)	206, 307, 393, 634
AgsI	TTSAA	4 cut(s)	111, 295, 460, 550
AluBI	AGCT	4 cut(s)	25, 68, 131, 433
AluI	AGCT	4 cut(s)	25, 68, 131, 433
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	301
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	2 cut(s)	117, 625
ApeKI	GCWGC	2 cut(s)	250, 442
ApoI	RAATTY	1 cut(s)	617
ArsI	GACNNNNNNTTYG	2 cut(s)	602, 634
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	269, 298
AsuC2I	CCSGG	3 cut(s)	466, 500, 629
AsuII	TTCGAA	1 cut(s)	621
AvaI	CYCGRG	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	269, 298
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	262, 454
BccI	CCATC	2 cut(s)	89, 628
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	3 cut(s)	466, 500, 629
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	4 cut(s)	46, 242, 251, 443
BlsI	GCNGC	4 cut(s)	47, 243, 252, 444
Bme1390I	CCNGG	3 cut(s)	466, 500, 629
Bme18I	GGWCC	2 cut(s)	269, 298
BmeT110I	CYCGRG	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	269, 298
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	3 cut(s)	466, 500, 629
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	3 cut(s)	25, 532, 605
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpmI	CTGGAG	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	621
BpuMI	CCSGG	3 cut(s)	466, 500, 629
Bsa29I	ATCGAT	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	302, 528, 628
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 307, 393, 634
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	176, 293
BseAI	TCCGGA	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	302, 528, 628
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	4 cut(s)	206, 307, 393, 634
BseNI	ACTGG	2 cut(s)	176, 293
BseRI	GAGGAG	4 cut(s)	141, 319, 467, 617
BseXI	GCAGC	2 cut(s)	262, 454
BseYI	CCCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	269
Bsh1236I	CGCG	2 cut(s)	45, 274
BshFI	GGCC	2 cut(s)	119, 627
BshVI	ATCGAT	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	5 cut(s)	259, 277, 465, 500, 628
BslI	CCNNNNNNNGG	4 cut(s)	206, 307, 393, 634
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	119, 627
BsoBI	CYCGRG	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	235, 568
BspACI	CCGC	5 cut(s)	45, 182, 241, 272, 333
BspANI	GGCC	2 cut(s)	119, 627
BspDI	ATCGAT	1 cut(s)	33
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	2 cut(s)	45, 274
BspLI	GGNNCC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	176, 293
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	302, 528, 628
BssMI	GATC	2 cut(s)	235, 568
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	352, 376
Bst6I	CTCTTC	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	621
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	132, 367
BstF5I	GGATG	1 cut(s)	639
BstFNI	CGCG	2 cut(s)	45, 274
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	2 cut(s)	238, 571
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	2 cut(s)	235, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 35, 247, 250, 439
BstSCI	CCNGG	3 cut(s)	464, 498, 627
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	2 cut(s)	45, 274
BstV1I	GCAGC	2 cut(s)	262, 454
BstV2I	GAAGAC	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	119, 627
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	639
BtsIMutI	CAGTG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	269, 298
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	3 cut(s)	230, 566, 586
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	2 cut(s)	132, 367
DpnI	GATC	2 cut(s)	237, 570
DpnII	GATC	2 cut(s)	235, 568
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	269, 298
Eco88I	CYCGRG	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	528
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	3 cut(s)	233, 569, 589
FaiI	YATR	6 cut(s)	231, 382, 494, 567, 587, 594
FatI	CATG	3 cut(s)	229, 565, 585
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	2 cut(s)	93, 413
Fnu4HI	GCNGC	4 cut(s)	46, 242, 251, 443
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	4 cut(s)	46, 242, 251, 443
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	4 cut(s)	46, 242, 251, 443
GsaI	CCCAGC	1 cut(s)	437
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	119, 627
HapII	CCGG	5 cut(s)	259, 277, 465, 500, 628
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	233, 569, 589
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	2 cut(s)	414, 610
HindII	GTYRAC	2 cut(s)	414, 610
HinfI	GANTC	2 cut(s)	60, 90
HpaII	CCGG	5 cut(s)	259, 277, 465, 500, 628
Hpy166II	GTNNAC	4 cut(s)	94, 414, 579, 610
Hpy188I	TCNGA	1 cut(s)	601
Hpy188III	TCNNGA	3 cut(s)	57, 87, 259
Hpy8I	GTNNAC	4 cut(s)	94, 414, 579, 610
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	2 cut(s)	352, 376
HpyCH4V	TGCA	2 cut(s)	250, 596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 35, 247, 250, 439
HpyF3I	CTNAG	2 cut(s)	132, 367
Hsp92II	CATG	3 cut(s)	233, 569, 589
HspAI	GCGC	1 cut(s)	274
Kpn2I	TCCGGA	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	235, 568
Lsp1109I	GCAGC	2 cut(s)	262, 454
LweI	GCATC	3 cut(s)	25, 532, 605
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	237, 570
MboI	GATC	2 cut(s)	235, 568
MboII	GAAGA	3 cut(s)	99, 490, 562
MfeI	CAATTG	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	4 cut(s)	191, 405, 418, 617
MlyI	GAGTC	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	598
MroI	TCCGGA	1 cut(s)	258
MseI	TTAA	1 cut(s)	471
MspI	CCGG	5 cut(s)	259, 277, 465, 500, 628
MspR9I	CCNGG	3 cut(s)	466, 500, 629
MunI	CAATTG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	45, 274
MwoI	GCNNNNNNNGC	5 cut(s)	26, 35, 247, 250, 439
NciI	CCSGG	3 cut(s)	466, 500, 629
NdeII	GATC	2 cut(s)	235, 568
NlaIII	CATG	3 cut(s)	233, 569, 589
NlaIV	GGNNCC	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	598
NspV	TTCGAA	1 cut(s)	621
PaqCI	CACCTGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	4 cut(s)	47, 243, 252, 444
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	269, 298
PspPPI	RGGWCCY	1 cut(s)	298
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SalI	GTCGAC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	4 cut(s)	46, 242, 251, 443
Sau3AI	GATC	2 cut(s)	235, 568
Sau96I	GGNCC	2 cut(s)	269, 298
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	3 cut(s)	466, 500, 629
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	7 cut(s)	27, 70, 133, 249, 271, 435, 609
SfaNI	GCATC	3 cut(s)	25, 532, 605
SfcI	CTRYAG	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	621
SgrAI	CRCCGGYG	1 cut(s)	276
SinI	GGWCC	2 cut(s)	269, 298
Sse9I	AATT	4 cut(s)	191, 405, 418, 617
SsiI	CCGC	5 cut(s)	45, 182, 241, 272, 333
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	464, 498, 627
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	352, 376
TaqI	TCGA	4 cut(s)	33, 413, 450, 621
TasI	AATT	4 cut(s)	191, 405, 418, 617
TauI	GCSGC	2 cut(s)	48, 244
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	2 cut(s)	250, 442
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	2 cut(s)	269, 298
XapI	RAATTY	1 cut(s)	617
XmiI	GTMKAC	2 cut(s)	93, 413
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.