RLG00000026663

Mitochondrial metalloendopeptidase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
4736269 .. 4743395
7127 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026663

Sequence Viewer

Length: 1035 bp
ATGTCATACTACAGAAGAGCCAAGCTCGTGCTCGATAATTTCCACGGATTCAAATTACCCAAAGATGTAACTAGAAAGCCCATCTCGAGAATTTACTCAACCTTGTATTCGCCTCTGGCCTCCAGCAAACCTAAGTTTCCAGGCTTTTCTTCTTCTTCGTCTTCGCGTAAACCAATTCCACAACTCCGAAGAATCACAAGAACAGCTCAACACAGTCCCTTTTCCGGCTGTGCCTATAGATATTACCACGGTGAGGATCGTTACCGCACTTGCCGATTCAGGACGAGGTGGCACGACTGCAGGTTTGAGACTATTCCCTACTCAAAACGAACCCACTTTGTGATTTTGGGAAGAGAATGGGAGAAGTTTCTTGGAGATTTAACATTTGAGGTGATGAAAATAACGGGGACTATAGGCAGCACATTGCCTGATGGAGACTTGCAAACCAGACGTGTTAGGCACATTGGCAATGAAATAACTCAGGGATTGATGAGAGGCATAACTAGGGAGGATCAAGAGAAGGGACGTCGGTGGTGGCGAGGCTCTAGAGTCGCCACTTCACATTTGGATTTTTTGAAGTGGGAGTTCTATGTAGAGGATGATCCTGATGTCAATGCAGCTTGCTTGGCCGGCGGCAAGATTTTGGTTTCCACAGGGTTGCTTAGTGGTGCGGTTGCTGCGCATGCACACACATTTTACCAATTGTCCGACCATTTATTTAGACTTCCTTTTTCCCGAAGGTTGGAACTGGAGGCAGATTACATTGGGCTGTTGTTGCTTGCTTCGGCCGGATATGATCCTAGGGTTGCTCTAGATGTGTGCCAGAAGTTCAGCAAGCTTGTTGGTGAATCTCCAAACCAGAAAGATTATCTTTCTACCCATCCAACCGAGAAAAAGCGAGCTGAAAAGCTGGCTCAATCTCACGTCATGGAAGAAGCACTCTCTATATACCGGGATGTAAAAGCTGGACGAGGGGCCGGGCAGGACAGGTTTTCTTCGAAGATGATCGATCCCTGTAACTTTACCTTTATATGA

Protein Analysis

345

Amino Acids

39.53

Weight (kDa)

9.69

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 236 - 305 2.6e-09 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 529
Acc16I TGCGCA 1 cut(s) 681
Acc36I ACCTGC 1 cut(s) 291
AccII CGCG 1 cut(s) 166
AciI CCGC 3 cut(s) 265, 633, 671
AclWI GGATC 5 cut(s) 264, 519, 596, 791, 1004
AcoI YGGCCR 2 cut(s) 627, 786
AcsI RAATTY 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 526
AdeI CACNNNGTG 1 cut(s) 340
AfiI CCNNNNNNNGG 3 cut(s) 224, 253, 742
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 2 cut(s) 52, 577
AjiI CACGTC 2 cut(s) 452, 925
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 7 cut(s) 25, 206, 620, 838, 902, 910, 965
AluI AGCT 7 cut(s) 25, 206, 620, 838, 902, 910, 965
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 2 cut(s) 302, 429
AlwI GGATC 5 cut(s) 264, 519, 596, 791, 1004
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 4 cut(s) 117, 627, 786, 975
ApeKI GCWGC 3 cut(s) 417, 617, 677
ApoI RAATTY 1 cut(s) 90
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspA2I CCTAGG 1 cut(s) 800
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 1 cut(s) 975
AsuC2I CCSGG 2 cut(s) 953, 979
AsuHPI GGTGA 3 cut(s) 263, 403, 857
AsuII TTCGAA 1 cut(s) 998
AvaI CYCGRG 1 cut(s) 85
AvrII CCTAGG 1 cut(s) 800
BauI CACGAG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 3 cut(s) 429, 629, 664
BccI CCATC 3 cut(s) 89, 425, 888
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 2 cut(s) 953, 979
BcoDI GTCTC 2 cut(s) 302, 429
BfaI CTAG 5 cut(s) 72, 504, 546, 801, 812
BfmI CTRYAG 4 cut(s) 10, 235, 298, 411
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 4 cut(s) 418, 618, 634, 678
BlnI CCTAGG 1 cut(s) 800
BlsI GCNGC 4 cut(s) 419, 619, 635, 679
Bme1390I CCNGG 3 cut(s) 141, 953, 979
BmeT110I CYCGRG 1 cut(s) 85
BmgBI CACGTC 2 cut(s) 452, 925
BmgT120I GGNCC 1 cut(s) 975
BmiI GGNNCC 1 cut(s) 976
BmrFI CCNGG 3 cut(s) 141, 953, 979
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BpmI CTGGAG 2 cut(s) 106, 770
Bpu14I TTCGAA 1 cut(s) 998
BpuMI CCSGG 2 cut(s) 953, 979
Bsa29I ATCGAT 1 cut(s) 1008
BsaHI GRCGYC 1 cut(s) 526
BsaJI CCNNGG 3 cut(s) 43, 247, 800
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 253, 742
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 753
Bse3DI GCAATG 2 cut(s) 422, 475
BseBI CCWGG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 1008
BseDI CCNNGG 3 cut(s) 43, 247, 800
BseGI GGATG 3 cut(s) 604, 880, 961
BseLI CCNNNNNNNGG 3 cut(s) 224, 253, 742
BseMI GCAATG 2 cut(s) 422, 475
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 1 cut(s) 753
BseX3I CGGCCG 1 cut(s) 786
BseXI GCAGC 3 cut(s) 429, 629, 664
Bsh1236I CGCG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 789
BshFI GGCC 4 cut(s) 119, 629, 788, 977
BshVI ATCGAT 1 cut(s) 1008
BsiEI CGRYCG 1 cut(s) 789
BsiHKAI GWGCWC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 5 cut(s) 225, 630, 789, 952, 978
BslFI GGGAC 3 cut(s) 201, 421, 537
BslI CCNNNNNNNGG 3 cut(s) 224, 253, 742
BsmAI GTCTC 2 cut(s) 302, 429
BsmFI GGGAC 3 cut(s) 201, 421, 537
BsnI GGCC 4 cut(s) 119, 629, 788, 977
BsoBI CYCGRG 1 cut(s) 85
Bsp119I TTCGAA 1 cut(s) 998
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 6 cut(s) 256, 511, 601, 796, 1005, 1009
BspACI CCGC 3 cut(s) 265, 633, 671
BspANI GGCC 4 cut(s) 119, 629, 788, 977
BspCNI CTCAG 1 cut(s) 493
BspDI ATCGAT 1 cut(s) 1008
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 976
BspMAI CTGCAG 1 cut(s) 302
BspMI ACCTGC 1 cut(s) 291
BspPI GGATC 5 cut(s) 264, 519, 596, 791, 1004
BspQI GCTCTTC 1 cut(s) 10
BspT104I TTCGAA 1 cut(s) 998
BsrDI GCAATG 2 cut(s) 422, 475
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 1 cut(s) 753
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 3 cut(s) 43, 247, 800
BssMI GATC 6 cut(s) 256, 511, 601, 796, 1005, 1009
BssNI GRCGYC 1 cut(s) 526
BssSI CACGAG 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 800
Bst2BI CACGAG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 215, 251
Bst6I CTCTTC 2 cut(s) 10, 346
BstACI GRCGYC 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 998
BstC8I GCNNGC 7 cut(s) 622, 631, 684, 780, 836, 900, 912
BstDEI CTNAG 3 cut(s) 132, 480, 662
BstDSI CCRYGG 2 cut(s) 43, 247
BstF5I GGATG 3 cut(s) 604, 880, 961
BstFNI CGCG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 6 cut(s) 259, 514, 604, 799, 1008, 1012
BstMAI GTCTC 2 cut(s) 302, 429
BstMBI GATC 6 cut(s) 256, 511, 601, 796, 1005, 1009
BstMCI CGRYCG 1 cut(s) 789
BstMWI GCNNNNNNNGC 5 cut(s) 626, 630, 677, 683, 775
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 3 cut(s) 139, 951, 977
BstSFI CTRYAG 4 cut(s) 10, 235, 298, 411
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 429, 629, 664
BstV2I GAAGAC 1 cut(s) 153
BstZI CGGCCG 1 cut(s) 786
Bsu15I ATCGAT 1 cut(s) 1008
BsuRI GGCC 4 cut(s) 119, 629, 788, 977
BsuTUI ATCGAT 1 cut(s) 1008
BtgI CCRYGG 2 cut(s) 43, 247
BtrI CACGTC 2 cut(s) 452, 925
BtsCI GGATG 3 cut(s) 604, 880, 961
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 7 cut(s) 622, 631, 684, 780, 836, 900, 912
CfoI GCGC 1 cut(s) 682
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 975
ClaI ATCGAT 1 cut(s) 1008
CviAII CATG 2 cut(s) 683, 928
DdeI CTNAG 3 cut(s) 132, 480, 662
DpnI GATC 6 cut(s) 258, 513, 603, 798, 1007, 1011
DpnII GATC 6 cut(s) 256, 511, 601, 796, 1005, 1009
DraIII CACNNNGTG 1 cut(s) 340
EaeI YGGCCR 2 cut(s) 627, 786
EagI CGGCCG 1 cut(s) 786
Eam1104I CTCTTC 2 cut(s) 10, 346
EarI CTCTTC 2 cut(s) 10, 346
EclXI CGGCCG 1 cut(s) 786
Eco130I CCWWGG 1 cut(s) 800
Eco52I CGGCCG 1 cut(s) 786
Eco88I CYCGRG 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 800
ErhI CCWWGG 1 cut(s) 800
FaeI CATG 2 cut(s) 686, 931
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FaqI GGGAC 3 cut(s) 201, 421, 537
FatI CATG 2 cut(s) 682, 927
Fnu4HI GCNGC 4 cut(s) 418, 618, 634, 678
FokI GGATG 3 cut(s) 611, 867, 968
Fsp4HI GCNGC 4 cut(s) 418, 618, 634, 678
FspBI CTAG 5 cut(s) 72, 504, 546, 801, 812
FspI TGCGCA 1 cut(s) 681
GlaI GCGC 1 cut(s) 681
GluI GCNGC 4 cut(s) 418, 618, 634, 678
GsuI CTGGAG 2 cut(s) 106, 770
HaeIII GGCC 4 cut(s) 119, 629, 788, 977
HapII CCGG 5 cut(s) 225, 630, 789, 952, 978
HhaI GCGC 1 cut(s) 682
Hin1I GRCGYC 1 cut(s) 526
Hin1II CATG 2 cut(s) 686, 931
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 5 cut(s) 48, 192, 276, 549, 848
HpaII CCGG 5 cut(s) 225, 630, 789, 952, 978
HphI GGTGA 3 cut(s) 263, 403, 857
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 188, 709
Hpy188III TCNNGA 8 cut(s) 85, 87, 280, 515, 546, 605, 735, 812
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 1 cut(s) 531
HpyAV CCTTC 2 cut(s) 514, 732
HpyCH4III ACNGT 2 cut(s) 215, 251
HpyCH4IV ACGT 3 cut(s) 451, 526, 924
HpyCH4V TGCA 4 cut(s) 300, 442, 617, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 626, 630, 677, 683, 775
HpyF3I CTNAG 3 cut(s) 132, 480, 662
HpySE526I ACGT 3 cut(s) 451, 526, 924
Hsp92I GRCGYC 1 cut(s) 526
Hsp92II CATG 2 cut(s) 686, 931
HspAI GCGC 1 cut(s) 680
KroI GCCGGC 1 cut(s) 629
KroNI GCCGGC 1 cut(s) 631
Kzo9I GATC 6 cut(s) 256, 511, 601, 796, 1005, 1009
LguI GCTCTTC 1 cut(s) 10
Lsp1109I GCAGC 3 cut(s) 429, 629, 664
MaeI CTAG 5 cut(s) 72, 504, 546, 801, 812
MaeII ACGT 3 cut(s) 451, 526, 924
MaeIII GTNAC 3 cut(s) 67, 260, 1016
MalI GATC 6 cut(s) 258, 513, 603, 798, 1007, 1011
MboI GATC 6 cut(s) 256, 511, 601, 796, 1005, 1009
MfeI CAATTG 1 cut(s) 701
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 5 cut(s) 37, 53, 90, 174, 701
MlyI GAGTC 1 cut(s) 558
MmeI TCCRAC 3 cut(s) 723, 732, 908
MroNI GCCGGC 1 cut(s) 629
MseI TTAA 1 cut(s) 380
MspI CCGG 5 cut(s) 225, 630, 789, 952, 978
MspR9I CCNGG 3 cut(s) 141, 953, 979
MunI CAATTG 1 cut(s) 701
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 5 cut(s) 626, 630, 677, 683, 775
NaeI GCCGGC 1 cut(s) 631
NciI CCSGG 2 cut(s) 953, 979
NdeII GATC 6 cut(s) 256, 511, 601, 796, 1005, 1009
NgoMIV GCCGGC 1 cut(s) 629
NlaIII CATG 2 cut(s) 686, 931
NlaIV GGNNCC 1 cut(s) 976
NsbI TGCGCA 1 cut(s) 681
NspI RCATGY 1 cut(s) 686
NspV TTCGAA 1 cut(s) 998
PaeI GCATGC 1 cut(s) 686
PaeR7I CTCGAG 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PdiI GCCGGC 1 cut(s) 631
PfeI GAWTC 4 cut(s) 48, 192, 276, 848
PkrI GCNGC 4 cut(s) 419, 619, 635, 679
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 976
PspPI GGNCC 1 cut(s) 975
PstI CTGCAG 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 4 cut(s) 418, 618, 634, 678
Sau3AI GATC 6 cut(s) 256, 511, 601, 796, 1005, 1009
Sau96I GGNCC 1 cut(s) 975
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 3 cut(s) 141, 953, 979
SduI GDGCHC 1 cut(s) 33
SfcI CTRYAG 4 cut(s) 10, 235, 298, 411
Sfr274I CTCGAG 1 cut(s) 85
SfuI TTCGAA 1 cut(s) 998
SlaI CTCGAG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SphI GCATGC 1 cut(s) 686
Sse9I AATT 5 cut(s) 37, 53, 90, 174, 701
SsiI CCGC 3 cut(s) 265, 633, 671
SspMI CTAG 5 cut(s) 72, 504, 546, 801, 812
StyD4I CCNGG 3 cut(s) 139, 951, 977
StyI CCWWGG 1 cut(s) 800
TaaI ACNGT 2 cut(s) 215, 251
TaiI ACGT 3 cut(s) 454, 529, 927
TaqI TCGA 4 cut(s) 33, 86, 998, 1008
TasI AATT 5 cut(s) 37, 53, 90, 174, 701
TauI GCSGC 1 cut(s) 636
TfiI GAWTC 4 cut(s) 48, 192, 276, 848
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TseI GCWGC 3 cut(s) 417, 617, 677
TspDTI ATGAA 2 cut(s) 410, 486
TspGWI ACGGA 1 cut(s) 60
XapI RAATTY 1 cut(s) 90
XbaI TCTAGA 2 cut(s) 545, 811
XceI RCATGY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 562
XhoI CTCGAG 1 cut(s) 85
XmaJI CCTAGG 1 cut(s) 800
XspI CTAG 5 cut(s) 72, 504, 546, 801, 812
ZraI GACGTC 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.