Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

12444139 .. 12445157

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG069900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAGGGGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAAGAAGGGTAAGGATAGTGGTATTAAGGATGCCACTTCGCATTTGGTTGATTTGGATTTGGAGATTTTGGTGGTGGATGAGCCGAATGTCAATGTGCTTTGCTTGCCGGGTGGGAAGATTGTGGTCTTCATAGGGTTGCTCAAGCATTTTAGAAGTTGGGCATGCCGTAGCTTGACACTATCAAGAGGGCATCACAAAGAGCCTGTGGGTTGCAATCCTGCAACTGGGACCTTTGGGCTTCATCCCAAAATTTGGAAGGCTAGGATCTTGGAATGTGATCATGCTAAGAAGTTCATGAAAAGTATAGAGTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

126

Amino Acids

14.25

Weight (kDa)

8.37

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	315
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	312
AcvI	CACGTG	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	287, 315
AluBI	AGCT	1 cut(s)	234
AluI	AGCT	1 cut(s)	234
AlwI	GGATC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	291
AsuC2I	CCSGG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	213
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	171
BfaI	CTAG	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	82, 262
BmuI	ACTGGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 315
Bse1I	ACTGG	1 cut(s)	292
BseGI	GGATG	4 cut(s)	31, 97, 145, 304
BseLI	CCNNNNNNNGG	2 cut(s)	287, 315
BseNI	ACTGG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	287, 315
BsmFI	GGGAC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	327, 340
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	327, 340
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	167, 226
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	4 cut(s)	31, 97, 145, 304
BstKTI	GATC	2 cut(s)	330, 343
BstMBI	GATC	2 cut(s)	327, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BtsCI	GGATG	4 cut(s)	31, 97, 145, 304
Cac8I	GCNNGC	2 cut(s)	167, 226
CciI	TCATGA	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	291
CviAII	CATG	3 cut(s)	225, 344, 358
CviJI	RGCY	5 cut(s)	145, 234, 265, 301, 323
CviKI_1	RGCY	5 cut(s)	145, 234, 265, 301, 323
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	2 cut(s)	329, 342
DpnII	GATC	2 cut(s)	327, 340
Eco47I	GGWCC	1 cut(s)	291
Eco72I	CACGTG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	291
FaeI	CATG	3 cut(s)	228, 347, 361
FaiI	YATR	6 cut(s)	57, 194, 226, 345, 359, 368
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	224, 343, 357
FbaI	TGATCA	1 cut(s)	340
FokI	GGATG	4 cut(s)	38, 104, 152, 291
FspBI	CTAG	1 cut(s)	324
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	3 cut(s)	228, 347, 361
HinfI	GANTC	2 cut(s)	31, 371
HpaII	CCGG	1 cut(s)	170
Hpy188III	TCNNGA	3 cut(s)	35, 246, 358
HpyAV	CCTTC	2 cut(s)	61, 313
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	276, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	228, 347, 361
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	327, 340
LpnPI	CCDG	4 cut(s)	183, 273, 279, 294
LweI	GCATC	2 cut(s)	82, 262
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	2 cut(s)	329, 342
MboI	GATC	2 cut(s)	327, 340
MboII	GAAGA	3 cut(s)	76, 181, 190
MflI	RGATCY	1 cut(s)	327
MluCI	AATT	2 cut(s)	10, 312
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	2 cut(s)	16, 242
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	2 cut(s)	327, 340
NlaIII	CATG	3 cut(s)	228, 347, 361
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	228
PaeI	GCATGC	1 cut(s)	228
PagI	TCATGA	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	315
PleI	GAGTC	1 cut(s)	379
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	291
PspCI	CACGTG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	291
PspPPI	RGGWCCY	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	327, 340
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	3 cut(s)	22, 236, 296
SfaNI	GCATC	2 cut(s)	82, 262
SinI	GGWCC	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SphI	GCATGC	1 cut(s)	228
Sse9I	AATT	2 cut(s)	10, 312
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	169
TaiI	ACGT	1 cut(s)	22
TasI	AATT	2 cut(s)	10, 312
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	4 cut(s)	181, 293, 346, 374
Van91I	CCANNNNNTGG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	312
XceI	RCATGY	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.