Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Reverse (-)

49279530 .. 49281954

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG363000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCCATGGGTTTCCAGCTGGTGTTAAGACTTAAGAATGGAGGTGTAGTTGTTTTGAAGACCCTTGGCACGATGGAATTGGAAGCAGATCACATTGGCCTGCTATTGATTGCTTCTGCTGGATATGATCCGAGAGTGGCTCCAACTGTGTACGAAAAGTTGGGTGAAATCTCGGGTGGAGATTCTGCTCTGAATGATTATCTTACTACTCATCCATCCGGGAAAACGAGAGCAGAAATGCTGGCTCTAGCTAACATCATGGAAGAGGCACTAGCTATATATCAGGACGTTTGCAAAGTGCAGCTGGTATCAGCAAACAGGTCTTGGACTCTTTGCCGAGTTTACAAGAAAAAGAAGCAAGGGGAGGAAGATTTGGCGGTGGTGGCCGTGGTGGTAGTAGGTTTGGTGGAAGAGGAGGTGGCAGGGGTGGTGGTGGTTTCTCTAATGGAAGAAATGATAGGTTTGGTGGCGGCAGAGGCCGCGGCAACTACAACAGATGGTGAAACCCACAGTGTTAGTCATCAAGTAACCTGTCCTGAGCAAACTACTAATAAAGGTTGCATTGATAATTACTTGAAGTGGCCAAGCGACTATAATTATTTGAAGTGGAGGCAAGAGCACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

208

Amino Acids

22.67

Weight (kDa)

5.04

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	482
AciI	CCGC	4 cut(s)	377, 470, 480, 482
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	3 cut(s)	3, 384, 581
AfaI	GTAC	1 cut(s)	152
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	58, 577, 604
AluBI	AGCT	4 cut(s)	19, 251, 275, 304
AluI	AGCT	4 cut(s)	19, 251, 275, 304
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	172
AoxI	GGCC	5 cut(s)	3, 97, 384, 477, 581
ApeKI	GCWGC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	176, 512
AvaI	CYCGRG	1 cut(s)	172
BalI	TGGCCA	2 cut(s)	5, 583
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	67, 223, 491
BceAI	ACGGC	1 cut(s)	371
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	2 cut(s)	248, 272
BfrI	CTTAAG	1 cut(s)	32
BisI	GCNGC	4 cut(s)	302, 471, 480, 483
BlsI	GCNGC	4 cut(s)	303, 472, 481, 484
Bme1390I	CCNGG	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
Bpu10I	CCTNAGC	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	220
BsaJI	CCNNGG	4 cut(s)	6, 64, 387, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
BseDI	CCNNGG	4 cut(s)	6, 64, 387, 480
BseGI	GGATG	2 cut(s)	211, 215
BseMII	CTCAG	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	5 cut(s)	5, 99, 386, 479, 583
BsiHKAI	GWGCWC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	219
BsnI	GGCC	5 cut(s)	5, 99, 386, 479, 583
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	2 cut(s)	88, 127
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	4 cut(s)	377, 470, 480, 482
BspANI	GGCC	5 cut(s)	5, 99, 386, 479, 583
BspCNI	CTCAG	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	32
BssECI	CCNNGG	4 cut(s)	6, 64, 387, 480
BssMI	GATC	2 cut(s)	88, 127
BssT1I	CCWWGG	2 cut(s)	6, 64
Bst4CI	ACNGT	2 cut(s)	148, 512
Bst6I	CTCTTC	2 cut(s)	258, 405
BstAFI	CTTAAG	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	101, 243
BstDEI	CTNAG	1 cut(s)	537
BstDSI	CCRYGG	3 cut(s)	6, 387, 480
BstF5I	GGATG	2 cut(s)	211, 215
BstFNI	CGCG	1 cut(s)	482
BstKTI	GATC	2 cut(s)	91, 130
BstMBI	GATC	2 cut(s)	88, 127
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 476, 479
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	65
BsuRI	GGCC	5 cut(s)	5, 99, 386, 479, 583
BtgI	CCRYGG	3 cut(s)	6, 387, 480
BtsCI	GGATG	2 cut(s)	211, 215
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	2 cut(s)	101, 243
Cfr42I	CCGCGG	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	7, 259
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	2 cut(s)	90, 129
DpnII	GATC	2 cut(s)	88, 127
EaeI	YGGCCR	3 cut(s)	3, 384, 581
Eam1104I	CTCTTC	2 cut(s)	258, 405
EarI	CTCTTC	2 cut(s)	258, 405
Eco130I	CCWWGG	2 cut(s)	6, 64
Eco88I	CYCGRG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	6, 64
ErhI	CCWWGG	2 cut(s)	6, 64
FaeI	CATG	2 cut(s)	10, 262
FaiI	YATR	6 cut(s)	8, 126, 260, 278, 280, 594
FatI	CATG	2 cut(s)	6, 258
Fnu4HI	GCNGC	4 cut(s)	302, 471, 480, 483
FokI	GGATG	2 cut(s)	198, 202
Fsp4HI	GCNGC	4 cut(s)	302, 471, 480, 483
FspBI	CTAG	2 cut(s)	248, 272
GluI	GCNGC	4 cut(s)	302, 471, 480, 483
HaeIII	GGCC	5 cut(s)	5, 99, 386, 479, 583
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	10, 262
HinfI	GANTC	2 cut(s)	182, 328
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	2 cut(s)	176, 512
Hpy166II	GTNNAC	2 cut(s)	151, 343
Hpy188I	TCNGA	3 cut(s)	132, 192, 626
Hpy188III	TCNNGA	2 cut(s)	284, 536
Hpy8I	GTNNAC	2 cut(s)	151, 343
HpyCH4III	ACNGT	2 cut(s)	148, 512
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	294, 301, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 476, 479
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	10, 262
KspI	CCGCGG	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	88, 127
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	248, 272
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	2 cut(s)	90, 129
MboI	GATC	2 cut(s)	88, 127
MboII	GAAGA	5 cut(s)	70, 275, 380, 422, 461
MhlI	GDGCHC	1 cut(s)	621
MlsI	TGGCCA	2 cut(s)	5, 583
MluCI	AATT	3 cut(s)	77, 568, 595
MluNI	TGGCCA	2 cut(s)	5, 583
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	7 cut(s)	35, 259, 358, 406, 409, 469, 603
Mox20I	TGGCCA	2 cut(s)	5, 583
MscI	TGGCCA	2 cut(s)	5, 583
MseI	TTAA	2 cut(s)	26, 33
Msp20I	TGGCCA	2 cut(s)	5, 583
MspA1I	CMGCKG	3 cut(s)	19, 304, 482
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	3 cut(s)	383, 476, 479
NciI	CCSGG	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	88, 127
NlaIII	CATG	2 cut(s)	10, 262
NlaIV	GGNNCC	1 cut(s)	141
NmeAIII	GCCGAG	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	218
PkrI	GCNGC	4 cut(s)	303, 472, 481, 484
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	141
PvuII	CAGCTG	2 cut(s)	19, 304
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacII	CCGCGG	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	26, 33
SatI	GCNGC	4 cut(s)	302, 471, 480, 483
Sau3AI	GATC	2 cut(s)	88, 127
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	621
Sfr303I	CCGCGG	1 cut(s)	483
SgrBI	CCGCGG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	3 cut(s)	77, 568, 595
SsiI	CCGC	4 cut(s)	377, 470, 480, 482
SspMI	CTAG	2 cut(s)	248, 272
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	2 cut(s)	6, 64
TaaI	ACNGT	2 cut(s)	148, 512
TaiI	ACGT	1 cut(s)	291
TasI	AATT	3 cut(s)	77, 568, 595
TauI	GCSGC	3 cut(s)	473, 482, 485
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	26, 33
Tru9I	TTAA	2 cut(s)	26, 33
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	1 cut(s)	301
TspRI	CASTG	1 cut(s)	517
Vha464I	CTTAAG	1 cut(s)	32
XspI	CTAG	2 cut(s)	248, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.