Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

28175194 .. 28176179

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTGAAGATGGGCTTCAATGCATTTTGCTTGCCTGGCAGGAAGATTGTCGTCTTCACGGAGTTGCTGAAACATTTTAGAAGTGATGCTGAGATAGCTACGATCATTGGTCATGAGGTTGGGCATGCGGTTGCTCGACATTCTGCAGGGGGCATTACAAAGAACCTGTGGTTTGCAATCATGCAACTGATACGTTATAAGTTTGTTATGCCTGATGTTGTCAACGCAATGTCCAATCTTTTCTTAAGGCTTCCTTTTTCTCGAAGGTACAGTACAGTTCATCTACTTCCTACCTTTTCAGTAATAACATCATATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

107

Amino Acids

12.07

Weight (kDa)

10.0

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AciI	CCGC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	269, 274
AflII	CTTAAG	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	7, 19
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbsI	GAAGAC	1 cut(s)	46
BccI	CCATC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	144
BfrI	CTTAAG	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	148
BspTI	CTTAAG	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	234
BssMI	GATC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	272, 277
BstAFI	CTTAAG	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	32, 126
BstDEI	CTNAG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 95
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	32, 126
CciI	TCATGA	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	268, 273
CviAII	CATG	3 cut(s)	113, 125, 181
CviJI	RGCY	3 cut(s)	15, 98, 250
CviKI_1	RGCY	3 cut(s)	15, 98, 250
CviQI	GTAC	2 cut(s)	268, 273
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	25
FaeI	CATG	3 cut(s)	116, 128, 184
FaiI	YATR	7 cut(s)	114, 126, 182, 198, 209, 313, 315
FalI	AAGNNNNNCTT	3 cut(s)	31, 238, 270
FatI	CATG	3 cut(s)	112, 124, 180
FauNDI	CATATG	1 cut(s)	313
Hin1II	CATG	3 cut(s)	116, 128, 184
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	2 cut(s)	113, 261
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	272, 277
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	4 cut(s)	23, 146, 176, 184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 95
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	116, 128, 184
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	6 cut(s)	21, 25, 48, 132, 179, 225
LweI	GCATC	1 cut(s)	76
MaeII	ACGT	1 cut(s)	193
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	3 cut(s)	19, 46, 55
MnlI	CCTC	1 cut(s)	109
Mph1103I	ATGCAT	1 cut(s)	25
MseI	TTAA	2 cut(s)	245, 319
MspCI	CTTAAG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	36, 95
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	3 cut(s)	116, 128, 184
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	128
PagI	TCATGA	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	269, 274
RsaNI	GTAC	2 cut(s)	268, 273
SaqAI	TTAA	2 cut(s)	245, 319
Sau3AI	GATC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	6 cut(s)	100, 120, 168, 196, 269, 296
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SphI	GCATGC	1 cut(s)	128
SsiI	CCGC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	272, 277
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	136, 262
TatI	WGTACW	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	245, 319
Tru9I	TTAA	2 cut(s)	245, 319
TspDTI	ATGAA	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	74
Vha464I	CTTAAG	1 cut(s)	244
XceI	RCATGY	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.