Prupe.2G284300_v2.0.a1

Mitochondrial metalloendopeptidase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
28170945 .. 28173787
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G284300.1

Sequence Viewer

Length: 1341 bp
ATGGGATGCTACAGAAGAGCAAAGCTTGCACTCGATGCCGTTCGCGGTTTCACAGCGAGGATTGTACCCAAAGTTGTAGCTAAAGAACCCATTTCGAGAGCTTTCTCAACCGAGTCTTCCACTTTGGCCTCCAACAAAGATAAGTTTTCTGGGTTTTCTTGGTGTTCTTCTCTTTCACAAAAATCAATTCCACAACTTGGATTTACCAGAAGAACACGGTACACTAGTCCCTTTCTTGATTCTGCCAAGAGATATTACTATGTCGATCGGAACAGCGTGCACCATTTTAAACCGAGAGGCCCCCGTAAGTGGTTTCAGAGTCCTAGAAACGTGTTCATTGTGGTTCTGGTGGGTTCTGGGGTTTTCATCACTGTGTATTTTGGGAATTTGGAGACTATTCCCTACACGAAGCGAACCCATTTTGTGATTTTGTCGAAAGCCTTGGAGAAGAAGATGGGAGAGTCCCAGTTTGAGCAATTGAAAGCCAGTTTCAAAGGGAAAATTTTGCCTGCTATACACCCAGACAGCGTCCGCGTTAGGTTGATTTCCAAGGATATAATTGAGGCGTTGCAGAGAGGGTTAAGGCATGAGGTGGGCTGGACTGACTTGGAGTATGCCTCTGATAGATTCGAGCCGGCACATGAAGGTAGTGGGCATGACACTTTGATGGCACTGAAGGACGTTGGAGAAGAGGTGAAGAAGTGGTCCCGTGAAGATGAGATTCTTGATGATGAATGGATTCAGAAGAGTAGGAAGACGGGTCAGGAACGAGGTACTAAAACTGCAACTTCGCATTTGGATCATCTGAATTGGGAGGTTTTGGTGGTGGATGAACCTGTTGTCAATGCATTTTGCTTGCCTGGCGGGAAGATTGTCGTCTTCACAGGGTTGCTGAAACATTTTAGAAGTGATGCTGAGATAGCTACGATCATTGGTCATGAGGTTGGGCATGCGGTTGCTCGACATTCTGCAGAGGGCATTACAAAGAACCTGTGGTTTGCAATCCTGCAACTGATACTTTATCAGTTTGTTATGCCTGATGTTGTCAACACAATGTCCAATCTTTTCTTAAAGCTTCCTTTTTCTCGAAGGATGGAAATTGAAGCGGATCACATTGGGCTGCTGTTGGTTGCTTCTGCGGGATATGATCCTAGAGTGGCTCCAACGGTGTACGAGAAGTTGGGCAAAATTTCCGGTGAATCTGCACTGAGAGATTATCTTTCAACCCATCCATCCGGGAAAAAGAGAGCTCAGTTGCTTGCTCAAGCTAAGATAATGGAAGAAGCACTTGCCATATACCGGGATGTAAGAGCTGGACGTGGGGTTGAAGGTTTTCTTTAG

Protein Analysis

447

Amino Acids

50.31

Weight (kDa)

9.49

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AccII CGCG 2 cut(s) 45, 534
AciI CCGC 6 cut(s) 45, 532, 864, 953, 1106, 1139
AclWI GGATC 3 cut(s) 807, 1116, 1142
AcsI RAATTY 3 cut(s) 385, 501, 1188
AcuI CTGAAG 1 cut(s) 695
AfaI GTAC 4 cut(s) 66, 221, 775, 1172
AfiI CCNNNNNNNGG 3 cut(s) 197, 309, 1299
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 5 cut(s) 481, 493, 1103, 1224, 1328
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 1319
AjnI CCWGG 1 cut(s) 859
AluBI AGCT 8 cut(s) 25, 80, 101, 923, 1075, 1250, 1268, 1313
AluI AGCT 8 cut(s) 25, 80, 101, 923, 1075, 1250, 1268, 1313
Alw21I GWGCWC 2 cut(s) 282, 1252
Alw26I GTCTC 1 cut(s) 386
Alw44I GTGCAC 1 cut(s) 278
AlwI GGATC 3 cut(s) 807, 1116, 1142
AoxI GGCC 2 cut(s) 126, 298
ApaLI GTGCAC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 1120
ApoI RAATTY 3 cut(s) 385, 501, 1188
Asp700I GAANNNNTTC 2 cut(s) 738, 1332
AspS9I GGNCC 2 cut(s) 299, 705
AsuC2I CCSGG 2 cut(s) 1237, 1301
AsuHPI GGTGA 2 cut(s) 706, 1208
AvaII GGWCC 1 cut(s) 705
BaeGI GKGCMC 1 cut(s) 282
BaeI ACNNNNGTAYC 2 cut(s) 211, 244
BanII GRGCYC 1 cut(s) 1252
BbsI GAAGAC 3 cut(s) 108, 761, 871
Bbv12I GWGCWC 2 cut(s) 282, 1252
BbvI GCAGC 1 cut(s) 1107
BccI CCATC 5 cut(s) 448, 661, 1087, 1236, 1240
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 861
BcnI CCSGG 2 cut(s) 1237, 1301
BcoDI GTCTC 1 cut(s) 386
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 225, 324, 1152
BfmI CTRYAG 2 cut(s) 10, 969
BisI GCNGC 1 cut(s) 1121
BlsI GCNGC 1 cut(s) 1122
Bme1390I CCNGG 3 cut(s) 861, 1237, 1301
Bme18I GGWCC 1 cut(s) 705
BmgBI CACGTC 1 cut(s) 1319
BmgT120I GGNCC 2 cut(s) 299, 705
BmiI GGNNCC 3 cut(s) 301, 707, 1161
BmrFI CCNGG 3 cut(s) 861, 1237, 1301
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 2 cut(s) 25, 901
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 3 cut(s) 108, 761, 871
BplI GAGNNNNNCTC 2 cut(s) 602, 634
BpuEI CTTGAG 1 cut(s) 1248
BpuMI CCSGG 2 cut(s) 1237, 1301
BsaJI CCNNGG 2 cut(s) 441, 549
BsaWI WCCGGW 1 cut(s) 1193
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 309, 1299
Bse118I RCCGGY 1 cut(s) 634
Bse1I ACTGG 2 cut(s) 466, 486
BseBI CCWGG 1 cut(s) 861
BseDI CCNNGG 2 cut(s) 441, 549
BseGI GGATG 6 cut(s) 11, 835, 1098, 1228, 1232, 1309
BseLI CCNNNNNNNGG 3 cut(s) 197, 309, 1299
BseMII CTCAG 3 cut(s) 906, 1199, 1265
BseNI ACTGG 2 cut(s) 466, 486
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 1 cut(s) 1107
BsgI GTGCAG 1 cut(s) 1188
Bsh1236I CGCG 2 cut(s) 45, 534
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 128, 300
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 282, 1252
BsiSI CCGG 4 cut(s) 635, 1194, 1236, 1300
BslFI GGGAC 3 cut(s) 213, 448, 691
BslI CCNNNNNNNGG 3 cut(s) 197, 309, 1299
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 3 cut(s) 213, 448, 691
BsnI GGCC 2 cut(s) 128, 300
Bsp1286I GDGCHC 2 cut(s) 282, 1252
Bsp143I GATC 5 cut(s) 265, 799, 927, 1108, 1147
BspACI CCGC 6 cut(s) 45, 532, 864, 953, 1106, 1139
BspANI GGCC 2 cut(s) 128, 300
BspCNI CTCAG 3 cut(s) 907, 1200, 1264
BspFNI CGCG 2 cut(s) 45, 534
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 3 cut(s) 301, 707, 1161
BspMAI CTGCAG 1 cut(s) 973
BspPI GGATC 3 cut(s) 807, 1116, 1142
BspQI GCTCTTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 634
BsrI ACTGG 2 cut(s) 466, 486
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 2 cut(s) 441, 549
BssMI GATC 5 cut(s) 265, 799, 927, 1108, 1147
BssT1I CCWWGG 2 cut(s) 441, 549
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 3 cut(s) 219, 373, 1168
Bst6I CTCTTC 3 cut(s) 10, 684, 740
BstAPI GCANNNNNTGC 2 cut(s) 26, 35
BstC8I GCNNGC 7 cut(s) 27, 278, 510, 636, 857, 951, 1260
BstDEI CTNAG 4 cut(s) 915, 1208, 1251, 1269
BstF5I GGATG 6 cut(s) 11, 835, 1098, 1228, 1232, 1309
BstFNI CGCG 2 cut(s) 45, 534
BstKTI GATC 5 cut(s) 268, 802, 930, 1111, 1150
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 5 cut(s) 265, 799, 927, 1108, 1147
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 4 cut(s) 26, 35, 861, 920
BstNI CCWGG 1 cut(s) 861
BstNSI RCATGY 1 cut(s) 953
BstSCI CCNGG 3 cut(s) 859, 1235, 1299
BstSFI CTRYAG 2 cut(s) 10, 969
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 2 cut(s) 45, 534
BstV1I GCAGC 1 cut(s) 1107
BstV2I GAAGAC 3 cut(s) 108, 761, 871
BsuRI GGCC 2 cut(s) 128, 300
BtrI CACGTC 1 cut(s) 1319
BtsCI GGATG 6 cut(s) 11, 835, 1098, 1228, 1232, 1309
BtsIMutI CAGTG 3 cut(s) 369, 671, 1205
Cac8I GCNNGC 7 cut(s) 27, 278, 510, 636, 857, 951, 1260
CciI TCATGA 1 cut(s) 937
Cfr10I RCCGGY 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 299, 705
CseI GACGC 1 cut(s) 517
Csp6I GTAC 4 cut(s) 65, 220, 774, 1171
CviAII CATG 5 cut(s) 587, 641, 656, 938, 950
CviQI GTAC 4 cut(s) 65, 220, 774, 1171
DdeI CTNAG 4 cut(s) 915, 1208, 1251, 1269
DpnI GATC 5 cut(s) 267, 801, 929, 1110, 1149
DpnII GATC 5 cut(s) 265, 799, 927, 1108, 1147
DraI TTTAAA 1 cut(s) 289
Eam1104I CTCTTC 3 cut(s) 10, 684, 740
EarI CTCTTC 3 cut(s) 10, 684, 740
Ecl136II GAGCTC 1 cut(s) 1250
Eco130I CCWWGG 2 cut(s) 441, 549
Eco24I GRGCYC 1 cut(s) 1252
Eco47I GGWCC 1 cut(s) 705
Eco53kI GAGCTC 1 cut(s) 1250
Eco57I CTGAAG 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 1250
EcoO109I RGGNCCY 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 859
EcoT14I CCWWGG 2 cut(s) 441, 549
EcoT22I ATGCAT 1 cut(s) 850
EcoT38I GRGCYC 1 cut(s) 1252
ErhI CCWWGG 2 cut(s) 441, 549
FaeI CATG 5 cut(s) 590, 644, 659, 941, 953
FalI AAGNNNNNCTT 3 cut(s) 1272, 1304, 1320
FaqI GGGAC 3 cut(s) 213, 448, 691
FatI CATG 5 cut(s) 586, 640, 655, 937, 949
FauI CCCGC 2 cut(s) 857, 1132
Fnu4HI GCNGC 1 cut(s) 1121
FokI GGATG 6 cut(s) 18, 842, 1105, 1215, 1219, 1316
FriOI GRGCYC 1 cut(s) 1252
Fsp4HI GCNGC 1 cut(s) 1121
FspBI CTAG 3 cut(s) 225, 324, 1152
GluI GCNGC 1 cut(s) 1121
HaeIII GGCC 2 cut(s) 128, 300
HapII CCGG 4 cut(s) 635, 1194, 1236, 1300
HgaI GACGC 1 cut(s) 517
Hin1II CATG 5 cut(s) 590, 644, 659, 941, 953
HincII GTYRAC 1 cut(s) 1048
HindII GTYRAC 1 cut(s) 1048
HindIII AAGCTT 2 cut(s) 23, 1073
HinfI GANTC 8 cut(s) 113, 239, 319, 461, 627, 721, 739, 1199
HpaII CCGG 4 cut(s) 635, 1194, 1236, 1300
HphI GGTGA 2 cut(s) 706, 1208
Hpy166II GTNNAC 4 cut(s) 222, 280, 1048, 1171
Hpy188I TCNGA 5 cut(s) 270, 318, 622, 744, 807
Hpy188III TCNNGA 6 cut(s) 96, 236, 725, 764, 938, 1086
Hpy8I GTNNAC 4 cut(s) 222, 280, 1048, 1171
HpyAV CCTTC 4 cut(s) 638, 670, 1083, 1322
HpyCH4III ACNGT 3 cut(s) 219, 373, 1168
HpyCH4IV ACGT 3 cut(s) 330, 681, 1318
HpyCH4V TGCA 9 cut(s) 29, 280, 571, 785, 848, 971, 1001, 1009, 1205
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 35, 861, 920
HpyF3I CTNAG 4 cut(s) 915, 1208, 1251, 1269
HpySE526I ACGT 3 cut(s) 330, 681, 1318
Hsp92II CATG 5 cut(s) 590, 644, 659, 941, 953
KroI GCCGGC 1 cut(s) 634
KroNI GCCGGC 1 cut(s) 636
Kzo9I GATC 5 cut(s) 265, 799, 927, 1108, 1147
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 1165
Lsp1109I GCAGC 1 cut(s) 1107
LweI GCATC 2 cut(s) 25, 901
MaeI CTAG 3 cut(s) 225, 324, 1152
MaeII ACGT 3 cut(s) 330, 681, 1318
MalI GATC 5 cut(s) 267, 801, 929, 1110, 1149
MboI GATC 5 cut(s) 265, 799, 927, 1108, 1147
MfeI CAATTG 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 282, 1252
MluCI AATT 8 cut(s) 186, 385, 476, 501, 558, 808, 1098, 1188
MlyI GAGTC 3 cut(s) 122, 328, 470
MmeI TCCRAC 3 cut(s) 156, 664, 1187
Mph1103I ATGCAT 1 cut(s) 850
MroNI GCCGGC 1 cut(s) 634
MroXI GAANNNNTTC 2 cut(s) 738, 1332
MseI TTAA 3 cut(s) 288, 581, 1070
MslI CAYNNNNRTG 2 cut(s) 371, 665
MspI CCGG 4 cut(s) 635, 1194, 1236, 1300
MspR9I CCNGG 3 cut(s) 861, 1237, 1301
MunI CAATTG 1 cut(s) 476
MvaI CCWGG 1 cut(s) 861
MvnI CGCG 2 cut(s) 45, 534
MwoI GCNNNNNNNGC 4 cut(s) 26, 35, 861, 920
NaeI GCCGGC 1 cut(s) 636
NciI CCSGG 2 cut(s) 1237, 1301
NdeII GATC 5 cut(s) 265, 799, 927, 1108, 1147
NgoMIV GCCGGC 1 cut(s) 634
NlaIII CATG 5 cut(s) 590, 644, 659, 941, 953
NlaIV GGNNCC 3 cut(s) 301, 707, 1161
NsiI ATGCAT 1 cut(s) 850
NspI RCATGY 1 cut(s) 953
PaeI GCATGC 1 cut(s) 953
PagI TCATGA 1 cut(s) 937
PciSI GCTCTTC 1 cut(s) 10
PdiI GCCGGC 1 cut(s) 636
PdmI GAANNNNTTC 2 cut(s) 738, 1332
PfeI GAWTC 5 cut(s) 239, 627, 721, 739, 1199
PflFI GACNNNGTC 1 cut(s) 527
PflMI CCANNNNNTGG 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 1235
PkrI GCNGC 1 cut(s) 1122
Ple19I CGATCG 1 cut(s) 268
PleI GAGTC 3 cut(s) 121, 327, 469
PpsI GAGTC 3 cut(s) 121, 327, 469
Psp124BI GAGCTC 1 cut(s) 1252
Psp6I CCWGG 1 cut(s) 859
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 3 cut(s) 301, 707, 1161
PspPI GGNCC 2 cut(s) 299, 705
PstI CTGCAG 1 cut(s) 973
PsyI GACNNNGTC 1 cut(s) 527
PvuI CGATCG 1 cut(s) 268
RsaI GTAC 4 cut(s) 66, 221, 775, 1172
RsaNI GTAC 4 cut(s) 65, 220, 774, 1171
RseI CAYNNNNRTG 2 cut(s) 371, 665
SacI GAGCTC 1 cut(s) 1252
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 288, 581, 1070
SatI GCNGC 1 cut(s) 1121
Sau3AI GATC 5 cut(s) 265, 799, 927, 1108, 1147
Sau96I GGNCC 2 cut(s) 299, 705
SchI GAGTC 3 cut(s) 122, 328, 470
ScrFI CCNGG 3 cut(s) 861, 1237, 1301
SduI GDGCHC 2 cut(s) 282, 1252
SfaNI GCATC 2 cut(s) 25, 901
SfcI CTRYAG 2 cut(s) 10, 969
SinI GGWCC 1 cut(s) 705
SmiMI CAYNNNNRTG 2 cut(s) 371, 665
SmlI CTYRAG 1 cut(s) 1263
SmoI CTYRAG 1 cut(s) 1263
SpeI ACTAGT 1 cut(s) 224
SphI GCATGC 1 cut(s) 953
Sse9I AATT 8 cut(s) 186, 385, 476, 501, 558, 808, 1098, 1188
SsiI CCGC 6 cut(s) 45, 532, 864, 953, 1106, 1139
SspMI CTAG 3 cut(s) 225, 324, 1152
SstI GAGCTC 1 cut(s) 1252
StyD4I CCNGG 3 cut(s) 859, 1235, 1299
StyI CCWWGG 2 cut(s) 441, 549
TaaI ACNGT 3 cut(s) 219, 373, 1168
TaiI ACGT 3 cut(s) 333, 684, 1321
TaqI TCGA 7 cut(s) 33, 95, 264, 434, 630, 961, 1087
TasI AATT 8 cut(s) 186, 385, 476, 501, 558, 808, 1098, 1188
TfiI GAWTC 5 cut(s) 239, 627, 721, 739, 1199
Tru1I TTAA 3 cut(s) 288, 581, 1070
Tru9I TTAA 3 cut(s) 288, 581, 1070
TscAI CASTG 3 cut(s) 376, 678, 1212
TseI GCWGC 1 cut(s) 1120
TspDTI ATGAA 5 cut(s) 325, 355, 657, 747, 846
TspRI CASTG 3 cut(s) 376, 678, 1212
Tth111I GACNNNGTC 1 cut(s) 527
Van91I CCANNNNNTGG 1 cut(s) 197
VneI GTGCAC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 705
XapI RAATTY 3 cut(s) 385, 501, 1188
XceI RCATGY 1 cut(s) 953
XmnI GAANNNNTTC 2 cut(s) 738, 1332
XspI CTAG 3 cut(s) 225, 324, 1152
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.