Rh7DG190700

Mitochondrial metalloendopeptidase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
17653868 .. 17654867
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG190700.1

Sequence Viewer

Length: 234 bp
ATGGAGGGGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAAGAAGGGTTGGGCATGCCGTAGCTTGACACTATCAAGAGGGCATCACAAAGAGCCTGTGGGTTGCAATCCTGCAACTGGGACCTTTGGGCTTCATCCCAAAATTTGGAAGGCTAGGATCTTGGAATGTGATCATGCTAAGAAGTTCATGAAAAGTATAGAGTCAAAATGA

Protein Analysis

77

Amino Acids

8.94

Weight (kDa)

9.15

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 168
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 165
AcvI CACGTG 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 140, 168
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
AlwI GGATC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 144
AvaII GGWCC 1 cut(s) 144
BbrPI CACGTG 1 cut(s) 20
BceAI ACGGC 1 cut(s) 66
BclI TGATCA 1 cut(s) 193
BfaI CTAG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 145
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 168
Bse1I ACTGG 1 cut(s) 145
BseGI GGATG 2 cut(s) 31, 157
BseLI CCNNNNNNNGG 2 cut(s) 140, 168
BseNI ACTGG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 140, 168
BsmFI GGGAC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 180, 193
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 145
BssMI GATC 2 cut(s) 180, 193
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 31, 157
BstKTI GATC 2 cut(s) 183, 196
BstMBI GATC 2 cut(s) 180, 193
BstNSI RCATGY 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtsCI GGATG 2 cut(s) 31, 157
Cac8I GCNNGC 1 cut(s) 79
CciI TCATGA 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 144
CviAII CATG 3 cut(s) 78, 197, 211
CviJI RGCY 4 cut(s) 87, 118, 154, 176
CviKI_1 RGCY 4 cut(s) 87, 118, 154, 176
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 182, 195
DpnII GATC 2 cut(s) 180, 193
Eco47I GGWCC 1 cut(s) 144
Eco72I CACGTG 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 144
FaeI CATG 3 cut(s) 81, 200, 214
FaiI YATR 5 cut(s) 57, 79, 198, 212, 221
FaqI GGGAC 1 cut(s) 157
FatI CATG 3 cut(s) 77, 196, 210
FbaI TGATCA 1 cut(s) 193
FokI GGATG 2 cut(s) 38, 144
FspBI CTAG 1 cut(s) 177
Hin1II CATG 3 cut(s) 81, 200, 214
HinfI GANTC 2 cut(s) 31, 224
Hpy188III TCNNGA 3 cut(s) 35, 99, 211
HpyAV CCTTC 2 cut(s) 61, 166
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 129, 137
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 3 cut(s) 81, 200, 214
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 180, 193
LpnPI CCDG 3 cut(s) 126, 132, 147
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 15
MalI GATC 2 cut(s) 182, 195
MboI GATC 2 cut(s) 180, 193
MboII GAAGA 1 cut(s) 76
MflI RGATCY 1 cut(s) 180
MluCI AATT 2 cut(s) 10, 165
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 2 cut(s) 16, 95
NdeII GATC 2 cut(s) 180, 193
NlaIII CATG 3 cut(s) 81, 200, 214
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 15
NspI RCATGY 1 cut(s) 81
PaeI GCATGC 1 cut(s) 81
PagI TCATGA 1 cut(s) 210
PfeI GAWTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 168
PleI GAGTC 1 cut(s) 232
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
PpsI GAGTC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 144
PspCI CACGTG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 144
PspPPI RGGWCCY 1 cut(s) 144
PsuI RGATCY 1 cut(s) 180
Sau3AI GATC 2 cut(s) 180, 193
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 233
SetI ASST 3 cut(s) 22, 89, 149
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 1 cut(s) 144
SphI GCATGC 1 cut(s) 81
Sse9I AATT 2 cut(s) 10, 165
SspMI CTAG 1 cut(s) 177
TaiI ACGT 1 cut(s) 22
TasI AATT 2 cut(s) 10, 165
TfiI GAWTC 1 cut(s) 31
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 146, 199, 227
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 1 cut(s) 165
XceI RCATGY 1 cut(s) 81
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.