Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020175.1

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

8139 .. 9464

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020175.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgccttgggtttgggaggccaaccagggaaatccggttggcgaaaatgccaccttctcgttggggaccgattgtaacctcgtcttggccaaagctgaagccactccccggttggcgaaaatgccaccttctcgtgggggactgatggtaaccttgtcctggtcaaagccaatggccgagtggcttgttgggaccaccacatggcagtgccacgtggtactccgagaccacgtaataattccctgggtgggacagtctctacggaccagaggagtaaacaagctcgttagccgggcctcacgggaagtaaacagagatggtctttacagtttcattttggagcccaagggattgtttttgtactataagagcaacaactccccaaagccattgctctactctcaactgattaccattcagaaggggtcgttagatcatgtgaagttgaacagcgctacagatgatggttatgtttgggacctaacattagagtcctcggctggaaatgtctatgttgggggccccaagttcaatggcaccttgacctatcttaggcttggaattgatggaaacatcaggcttcacgcttactatggccaggcaaacagtttccattactacaaggttgaaggggtagatcatttcttgagtaagtacaccagaggatctgctgcgaaggaggttgattgtggtcagaagtgcagttcagactgcaagtgtttgggatacttctacaaccaggaaacatcaaggtgttggattgcttatgagttgaagaccctgactaaattaagttgccaattctactcatgtgggttacatcaaggcacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

277

Amino Acids

31.01

Weight (kDa)

8.86

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	536, 827
AccB7I	CCANNNNNTGG	1 cut(s)	201
AclWI	GGATC	1 cut(s)	673
AcoI	YGGCCR	3 cut(s)	87, 174, 595
AcuI	CTGAAG	1 cut(s)	117
AcvI	CACGTG	1 cut(s)	214
AfaI	GTAC	3 cut(s)	219, 362, 656
AfeI	AGCGCT	1 cut(s)	454
AfiI	CCNNNNNNNGG	7 cut(s)	85, 108, 134, 159, 201, 248, 552
AgsI	TTSAA	4 cut(s)	448, 532, 629, 775
AjnI	CCWGG	5 cut(s)	24, 158, 242, 597, 738
AluBI	AGCT	2 cut(s)	95, 283
AluI	AGCT	2 cut(s)	95, 283
Alw26I	GTCTC	2 cut(s)	219, 261
AlwI	GGATC	1 cut(s)	673
Aor51HI	AGCGCT	1 cut(s)	454
AoxI	GGCC	6 cut(s)	18, 87, 174, 294, 520, 595
ApaI	GGGCCC	1 cut(s)	524
ApeKI	GCWGC	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	7 cut(s)	66, 192, 264, 294, 478, 520, 521
AsuC2I	CCSGG	2 cut(s)	109, 293
AvaII	GGWCC	4 cut(s)	66, 192, 264, 478
BaeGI	GKGCMC	1 cut(s)	524
BalI	TGGCCA	2 cut(s)	89, 597
BanI	GGYRCC	2 cut(s)	536, 827
BanII	GRGCYC	2 cut(s)	345, 524
BauI	CACGAG	1 cut(s)	132
BbrPI	CACGTG	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	782
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	4 cut(s)	139, 311, 458, 560
BciT130I	CCWGG	5 cut(s)	26, 160, 244, 599, 740
BciVI	GTATCC	1 cut(s)	719
BcnI	CCSGG	2 cut(s)	109, 293
BcoDI	GTCTC	2 cut(s)	219, 261
BfmI	CTRYAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	719
BisI	GCNGC	1 cut(s)	672
BlsI	GCNGC	1 cut(s)	673
Bme1390I	CCNGG	7 cut(s)	26, 109, 160, 244, 293, 599, 740
Bme18I	GGWCC	4 cut(s)	66, 192, 264, 478
BmgT120I	GGNCC	7 cut(s)	66, 192, 264, 294, 478, 520, 521
BmiI	GGNNCC	9 cut(s)	67, 193, 342, 479, 521, 522, 523, 538, 829
BmrFI	CCNGG	7 cut(s)	26, 109, 160, 244, 293, 599, 740
BpiI	GAAGAC	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	667
BpuMI	CCSGG	2 cut(s)	109, 293
BsaAI	YACGTR	2 cut(s)	214, 232
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	7 cut(s)	5, 25, 107, 242, 243, 345, 495
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	7 cut(s)	85, 108, 134, 159, 201, 248, 552
Bse3DI	GCAATG	1 cut(s)	389
BseBI	CCWGG	5 cut(s)	26, 160, 244, 599, 740
BseDI	CCNNGG	7 cut(s)	5, 25, 107, 242, 243, 345, 495
BseLI	CCNNNNNNNGG	7 cut(s)	85, 108, 134, 159, 201, 248, 552
BseMI	GCAATG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	658
BsgI	GTGCAG	1 cut(s)	721
BshFI	GGCC	6 cut(s)	20, 89, 176, 296, 522, 597
BshNI	GGYRCC	2 cut(s)	536, 827
BsiSI	CCGG	3 cut(s)	35, 109, 292
BslFI	GGGAC	5 cut(s)	79, 153, 205, 264, 491
BslI	CCNNNNNNNGG	7 cut(s)	85, 108, 134, 159, 201, 248, 552
BsmAI	GTCTC	2 cut(s)	219, 261
BsmFI	GGGAC	5 cut(s)	79, 153, 205, 264, 491
BsnI	GGCC	6 cut(s)	20, 89, 176, 296, 522, 597
Bso31I	GGTCTC	1 cut(s)	219
Bsp120I	GGGCCC	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	345, 524
Bsp143I	GATC	3 cut(s)	433, 637, 665
BspANI	GGCC	6 cut(s)	20, 89, 176, 296, 522, 597
BspLI	GGNNCC	9 cut(s)	67, 193, 342, 479, 521, 522, 523, 538, 829
BspPI	GGATC	1 cut(s)	673
BspT107I	GGYRCC	2 cut(s)	536, 827
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	389
BssECI	CCNNGG	7 cut(s)	5, 25, 107, 242, 243, 345, 495
BssMI	GATC	3 cut(s)	433, 637, 665
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	2 cut(s)	5, 345
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	5 cut(s)	26, 160, 244, 599, 740
Bst4CI	ACNGT	3 cut(s)	255, 329, 608
BstBAI	YACGTR	2 cut(s)	214, 232
BstDEI	CTNAG	1 cut(s)	551
BstEII	GGTNACC	1 cut(s)	148
BstENI	CCTNNNNNAGG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	3 cut(s)	436, 640, 668
BstMAI	GTCTC	2 cut(s)	219, 261
BstMBI	GATC	3 cut(s)	433, 637, 665
BstNI	CCWGG	5 cut(s)	26, 160, 244, 599, 740
BstPI	GGTNACC	1 cut(s)	148
BstSCI	CCNGG	7 cut(s)	24, 107, 158, 242, 291, 597, 738
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	658
BstV2I	GAAGAC	1 cut(s)	782
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BsuI	GTATCC	1 cut(s)	719
BsuRI	GGCC	6 cut(s)	20, 89, 176, 296, 522, 597
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	212
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	7 cut(s)	66, 192, 264, 294, 478, 520, 521
Csp6I	GTAC	3 cut(s)	218, 361, 655
CviAII	CATG	3 cut(s)	201, 437, 810
CviQI	GTAC	3 cut(s)	218, 361, 655
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	3 cut(s)	435, 639, 667
DpnII	GATC	3 cut(s)	433, 637, 665
EaeI	YGGCCR	3 cut(s)	87, 174, 595
Eco130I	CCWWGG	2 cut(s)	5, 345
Eco24I	GRGCYC	2 cut(s)	345, 524
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	4 cut(s)	66, 192, 264, 478
Eco47III	AGCGCT	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	117
Eco72I	CACGTG	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	550
EcoO109I	RGGNCCY	3 cut(s)	478, 520, 521
EcoO65I	GGTNACC	1 cut(s)	148
EcoRII	CCWGG	5 cut(s)	24, 158, 242, 597, 738
EcoT14I	CCWWGG	2 cut(s)	5, 345
EcoT38I	GRGCYC	2 cut(s)	345, 524
ErhI	CCWWGG	2 cut(s)	5, 345
FaeI	CATG	3 cut(s)	204, 440, 813
FaiI	YATR	8 cut(s)	202, 366, 438, 471, 513, 594, 768, 811
FaqI	GGGAC	5 cut(s)	79, 153, 205, 264, 491
FatI	CATG	3 cut(s)	200, 436, 809
Fnu4HI	GCNGC	1 cut(s)	672
FriOI	GRGCYC	2 cut(s)	345, 524
Fsp4HI	GCNGC	1 cut(s)	672
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	1 cut(s)	672
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	6 cut(s)	20, 89, 176, 296, 522, 597
HapII	CCGG	3 cut(s)	35, 109, 292
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	3 cut(s)	204, 440, 813
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	1 cut(s)	491
HpaII	CCGG	3 cut(s)	35, 109, 292
Hpy166II	GTNNAC	3 cut(s)	277, 310, 657
Hpy188I	TCNGA	4 cut(s)	224, 420, 696, 709
Hpy188III	TCNNGA	1 cut(s)	646
Hpy8I	GTNNAC	3 cut(s)	277, 310, 657
HpyAV	CCTTC	5 cut(s)	64, 138, 415, 623, 670
HpyCH4III	ACNGT	3 cut(s)	255, 329, 608
HpyCH4IV	ACGT	2 cut(s)	213, 231
HpyCH4V	TGCA	2 cut(s)	702, 714
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	2 cut(s)	213, 231
Hsp92II	CATG	3 cut(s)	204, 440, 813
HspAI	GCGC	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	433, 637, 665
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	658
MaeII	ACGT	2 cut(s)	213, 231
MaeIII	GTNAC	3 cut(s)	74, 148, 816
MalI	GATC	3 cut(s)	435, 639, 667
MboI	GATC	3 cut(s)	433, 637, 665
MboII	GAAGA	1 cut(s)	787
MflI	RGATCY	1 cut(s)	665
MhlI	GDGCHC	2 cut(s)	345, 524
MlsI	TGGCCA	2 cut(s)	89, 597
MluCI	AATT	4 cut(s)	237, 561, 788, 800
MluNI	TGGCCA	2 cut(s)	89, 597
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	737
MnlI	CCTC	7 cut(s)	10, 89, 263, 307, 505, 656, 673
Mox20I	TGGCCA	2 cut(s)	89, 597
MscI	TGGCCA	2 cut(s)	89, 597
MseI	TTAA	1 cut(s)	791
MslI	CAYNNNNRTG	2 cut(s)	205, 751
Msp20I	TGGCCA	2 cut(s)	89, 597
MspI	CCGG	3 cut(s)	35, 109, 292
MspR9I	CCNGG	7 cut(s)	26, 109, 160, 244, 293, 599, 740
MvaI	CCWGG	5 cut(s)	26, 160, 244, 599, 740
NciI	CCSGG	2 cut(s)	109, 293
NdeII	GATC	3 cut(s)	433, 637, 665
NlaIII	CATG	3 cut(s)	204, 440, 813
NlaIV	GGNNCC	9 cut(s)	67, 193, 342, 479, 521, 522, 523, 538, 829
NmeAIII	GCCGAG	2 cut(s)	202, 476
PasI	CCCWGGG	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	673
PleI	GAGTC	1 cut(s)	499
PmaCI	CACGTG	1 cut(s)	214
PmlI	CACGTG	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	2 cut(s)	214, 232
PpuMI	RGGWCCY	1 cut(s)	478
Psp5II	RGGWCCY	1 cut(s)	478
Psp6I	CCWGG	5 cut(s)	24, 158, 242, 597, 738
PspCI	CACGTG	1 cut(s)	214
PspEI	GGTNACC	1 cut(s)	148
PspGI	CCWGG	5 cut(s)	24, 158, 242, 597, 738
PspN4I	GGNNCC	9 cut(s)	67, 193, 342, 479, 521, 522, 523, 538, 829
PspOMI	GGGCCC	1 cut(s)	520
PspPI	GGNCC	7 cut(s)	66, 192, 264, 294, 478, 520, 521
PspPPI	RGGWCCY	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	665
RsaI	GTAC	3 cut(s)	219, 362, 656
RsaNI	GTAC	3 cut(s)	218, 361, 655
RseI	CAYNNNNRTG	2 cut(s)	205, 751
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	3 cut(s)	433, 637, 665
Sau96I	GGNCC	7 cut(s)	66, 192, 264, 294, 478, 520, 521
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	7 cut(s)	26, 109, 160, 244, 293, 599, 740
SduI	GDGCHC	2 cut(s)	345, 524
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	4 cut(s)	66, 192, 264, 478
SmiMI	CAYNNNNRTG	2 cut(s)	205, 751
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	4 cut(s)	237, 561, 788, 800
StyD4I	CCNGG	7 cut(s)	24, 107, 158, 242, 291, 597, 738
StyI	CCWWGG	2 cut(s)	5, 345
TaaI	ACNGT	3 cut(s)	255, 329, 608
TaiI	ACGT	2 cut(s)	216, 234
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	4 cut(s)	237, 561, 788, 800
TatI	WGTACW	2 cut(s)	360, 654
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	1 cut(s)	671
TspDTI	ATGAA	1 cut(s)	322
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	4 cut(s)	66, 192, 264, 478
XagI	CCTNNNNNAGG	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	3 cut(s)	58, 109, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.