Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

16719195 .. 16720235

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAGGGTGAGAAGGGGAAAATGGAGGGGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAAGAAGGGTAAGGATAGTGGTGTTAAGGATGCCACTTCGCATTTGGTTGATTTGGATTGGGAGATTTTGGTGGTGGATGAGCCGAATGTCAGTGTGCTTTGCTTGCCGGGTGGGAAAATTGTGGTCTTCATAGGGTTGCTCAAGCATTTTAGAAGTTGGGCATGCCGTAGCTTGACACTATCAAGAGGGCATCACAAAGAGCCTGTGGGTTGCAATCCTGCAACTGGGACCTTTGGGCTTCATCCCAAAATTTGGAAGGCTAGGATCTTGGAATGTGATCATGCTAAGAAGTTCATGAAAAGTATAGAGTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

133

Amino Acids

15.05

Weight (kDa)

8.35

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	336
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	333
AcvI	CACGTG	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	308, 336
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
AlwI	GGATC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	312
BbrPI	CACGTG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	234
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	192
BfaI	CTAG	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	103, 283
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 336
Bse1I	ACTGG	1 cut(s)	313
BseGI	GGATG	4 cut(s)	52, 118, 166, 325
BseLI	CCNNNNNNNGG	2 cut(s)	308, 336
BseNI	ACTGG	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	308, 336
BsmFI	GGGAC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	348, 361
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	313
BssMI	GATC	2 cut(s)	348, 361
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	188, 247
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	4 cut(s)	52, 118, 166, 325
BstKTI	GATC	2 cut(s)	351, 364
BstMBI	GATC	2 cut(s)	348, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BtsCI	GGATG	4 cut(s)	52, 118, 166, 325
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	188, 247
CciI	TCATGA	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	312
CviAII	CATG	3 cut(s)	246, 365, 379
CviJI	RGCY	5 cut(s)	166, 255, 286, 322, 344
CviKI_1	RGCY	5 cut(s)	166, 255, 286, 322, 344
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	2 cut(s)	350, 363
DpnII	GATC	2 cut(s)	348, 361
Eco47I	GGWCC	1 cut(s)	312
Eco72I	CACGTG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	312
FaeI	CATG	3 cut(s)	249, 368, 382
FaiI	YATR	6 cut(s)	78, 215, 247, 366, 380, 389
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	3 cut(s)	245, 364, 378
FbaI	TGATCA	1 cut(s)	361
FokI	GGATG	4 cut(s)	59, 125, 173, 312
FspBI	CTAG	1 cut(s)	345
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	3 cut(s)	249, 368, 382
HinfI	GANTC	2 cut(s)	52, 392
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	56, 267, 379
HpyAV	CCTTC	3 cut(s)	7, 82, 334
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	297, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	3 cut(s)	249, 368, 382
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	348, 361
LpnPI	CCDG	4 cut(s)	204, 294, 300, 315
LweI	GCATC	2 cut(s)	103, 283
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	2 cut(s)	350, 363
MboI	GATC	2 cut(s)	348, 361
MboII	GAAGA	2 cut(s)	97, 202
MflI	RGATCY	1 cut(s)	348
MluCI	AATT	3 cut(s)	31, 201, 333
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	3 cut(s)	19, 37, 263
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	348, 361
NlaIII	CATG	3 cut(s)	249, 368, 382
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	249
PagI	TCATGA	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	336
PleI	GAGTC	1 cut(s)	400
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	400
Ppu21I	YACGTR	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	312
PspCI	CACGTG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	312
PspPPI	RGGWCCY	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	348, 361
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	3 cut(s)	43, 257, 317
SfaNI	GCATC	2 cut(s)	103, 283
SinI	GGWCC	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	3 cut(s)	31, 201, 333
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	190
TaiI	ACGT	1 cut(s)	43
TasI	AATT	3 cut(s)	31, 201, 333
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	4 cut(s)	202, 314, 367, 395
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	312
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.