Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Reverse (-)

4924696 .. 4925519

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGATTTGGAAGCGGATTACATTGGCCTGCTATTGATTGCTTCTGCTGGATATGATCCGAGAGTGGCTCCAACTGTGTACGAAAATTTGGGTGAAATCTCGGGTGGAGATTCTGCTCTGAATGATTATCTTACTACTCATCCATCCGGGAAAACGAGAGCAGAAATGCTGGCTCGAGCTAACATCATGGAAGAGGCACTAGCTATATATCAGGACGTAATAAGAGCAGGACGTGGGATTGAAGGTTTTGCTTATTCGGCCTTGTGGAGGTTCTTGCCGGAAGAGAAGGTCGAGTCAGTGAAGGGTATGGCACCAACAACTGATGGAAAGGGTGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

113

Amino Acids

12.15

Weight (kDa)

4.57

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	242
AjiI	CACGTC	1 cut(s)	233
AluBI	AGCT	2 cut(s)	179, 203
AluI	AGCT	2 cut(s)	179, 203
AlwI	GGATC	1 cut(s)	50
Ama87I	CYCGRG	2 cut(s)	100, 174
AoxI	GGCC	2 cut(s)	25, 258
ApoI	RAATTY	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	2 cut(s)	100, 174
BanI	GGYRCC	1 cut(s)	310
BccI	CCATC	2 cut(s)	151, 317
BcnI	CCSGG	1 cut(s)	148
BfaI	CTAG	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	148
BmeT110I	CYCGRG	2 cut(s)	100, 174
BmgBI	CACGTC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	69, 312
BmrFI	CCNGG	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BpuMI	CCSGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	139, 143
BseLI	CCNNNNNNNGG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	27, 260
BshNI	GGYRCC	1 cut(s)	310
BsiHKCI	CYCGRG	2 cut(s)	100, 174
BsiSI	CCGG	2 cut(s)	147, 278
BslI	CCNNNNNNNGG	1 cut(s)	267
BsnI	GGCC	2 cut(s)	27, 260
BsoBI	CYCGRG	2 cut(s)	100, 174
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	27, 260
BspLI	GGNNCC	2 cut(s)	69, 312
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	310
BssMI	GATC	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	186, 276
BstC8I	GCNNGC	2 cut(s)	29, 171
BstENI	CCTNNNNNAGG	1 cut(s)	265
BstF5I	GGATG	2 cut(s)	139, 143
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	27, 260
BtrI	CACGTC	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	139, 143
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	29, 171
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	6 cut(s)	27, 68, 173, 179, 203, 260
CviKI_1	RGCY	6 cut(s)	27, 68, 173, 179, 203, 260
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	186, 276
EarI	CTCTTC	2 cut(s)	186, 276
Eco88I	CYCGRG	2 cut(s)	100, 174
EcoNI	CCTNNNNNAGG	1 cut(s)	265
FaeI	CATG	1 cut(s)	190
FaiI	YATR	5 cut(s)	54, 188, 206, 208, 308
FatI	CATG	1 cut(s)	186
FokI	GGATG	2 cut(s)	126, 130
FspBI	CTAG	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	27, 260
HapII	CCGG	2 cut(s)	147, 278
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	2 cut(s)	110, 293
HpaII	CCGG	2 cut(s)	147, 278
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	60, 120
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	236, 280, 295
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	2 cut(s)	216, 232
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpySE526I	ACGT	2 cut(s)	216, 232
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	7 cut(s)	33, 41, 155, 160, 197, 213, 291
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	2 cut(s)	216, 232
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	203, 293
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	2 cut(s)	187, 261
MspI	CCGG	2 cut(s)	147, 278
MspR9I	CCNGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	69, 312
PaeR7I	CTCGAG	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	146
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	69, 312
PspXI	VCTCGAGB	1 cut(s)	174
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	7 cut(s)	181, 205, 219, 235, 247, 272, 291
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	2 cut(s)	219, 235
TaqI	TCGA	2 cut(s)	175, 291
TasI	AATT	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	110
TscAI	CASTG	1 cut(s)	303
TspRI	CASTG	1 cut(s)	303
XagI	CCTNNNNNAGG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	174
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.