Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Reverse (-)

33787842 .. 33791740

Gene Structure 3899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG177000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAGGGTGAGAAGGGGAAAATGGAGGGGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATGGTAGGAAGAAGGGTGGGAAGATTGTGGTCTTCACAGGGTTGCTCAAGCATTTTAGAAGTGATGCCGATATAGCTATGATAATTGGTCATGAGGTTGGGCATACTCTTATTTCAGTTGATTTTGTCAACCCATTATCCAATCTTTTCTTAAGGCTTCTTTTTTCCCGAAGTAAGGCTACTTTGATGATCAGTATACTAGGACTTAACCGGAGCATGCTTGCAGTACTTGTTGACTGGCTTGTGGAGGTGGCTGAAGAGTACATGCTTAACTTTTGGATCAGGTTGCTGAAAGTGCTATTAGCTTTGACTGAGGTGTCTGTTCCATTAGAAGCTCTGCAACCTCTTTGGACCTCCATGAACCGTAAATCTTGGGGTAGAAAGTTACATTCCTCGTCATCAGCTAAAGACCTTCTCCAGACTGTTAGTAGGGAAATTCAGAAGATTTTGACAGAGAGGGCAGCCAAGTTCAATATTGCAATGGATAATGTAGTTGGTTGCTATTATGTTTATGGGCTAGCCGTTGTAGGTTTTGGGGTTTTATTTTGTGAATTATGTAGAATCATGAATGAAGATGAGAAAATTAATGGAAAGCCCCAATTTTTGGATGATGAGAAATGTATTTCTAGATTATCTTTTCCCACCACCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

243

Amino Acids

27.58

Weight (kDa)

6.97

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	27 - 98	1.8e-08	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	351
AcvI	CACGTG	1 cut(s)	41
AfaI	GTAC	2 cut(s)	303, 338
AfiI	CCNNNNNNNGG	2 cut(s)	250, 679
AflII	CTTAAG	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	547
AluBI	AGCT	5 cut(s)	152, 380, 410, 479, 729
AluI	AGCT	5 cut(s)	152, 380, 410, 479, 729
AlwI	GGATC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	536, 726
ApoI	RAATTY	1 cut(s)	510
AseI	ATTAAT	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	20
AsuNHI	GCTAGC	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	426
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BbrPI	CACGTG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	581
BclI	TGATCA	1 cut(s)	264
BfaI	CTAG	4 cut(s)	275, 593, 702, 730
BfrI	CTTAAG	1 cut(s)	226
BisI	GCNGC	2 cut(s)	537, 727
BlsI	GCNGC	2 cut(s)	538, 728
BmcAI	AGTACT	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	426
BmgT120I	GGNCC	1 cut(s)	426
BmsI	GCATC	1 cut(s)	130
BmtI	GCTAGC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 679
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	52, 688
BseLI	CCNNNNNNNGG	2 cut(s)	250, 679
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	250, 679
Bsp143I	GATC	2 cut(s)	264, 354
BspCNI	CTCAG	1 cut(s)	379
BspHI	TCATGA	2 cut(s)	166, 639
BspOI	GCTAGC	1 cut(s)	596
BspPI	GGATC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	317
BssMI	GATC	2 cut(s)	264, 354
BssNAI	GTATAC	1 cut(s)	272
Bst1107I	GTATAC	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	440, 499
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	293, 297, 594
BstDEI	CTNAG	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	52, 688
BstKTI	GATC	2 cut(s)	267, 357
BstMBI	GATC	2 cut(s)	264, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 370
BstNSI	RCATGY	2 cut(s)	295, 343
BstV1I	GCAGC	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	100
BstZ17I	GTATAC	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	52, 688
Cac8I	GCNNGC	3 cut(s)	293, 297, 594
CciI	TCATGA	2 cut(s)	166, 639
Cfr13I	GGNCC	1 cut(s)	426
Csp6I	GTAC	2 cut(s)	302, 337
CviAII	CATG	6 cut(s)	77, 167, 292, 340, 433, 640
CviQI	GTAC	2 cut(s)	302, 337
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	2 cut(s)	266, 356
DpnII	GATC	2 cut(s)	264, 354
DrdI	GACNNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	351
Eco72I	CACGTG	1 cut(s)	41
FaeI	CATG	6 cut(s)	80, 170, 295, 343, 436, 643
FatI	CATG	6 cut(s)	76, 166, 291, 339, 432, 639
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	537, 727
FokI	GGATG	2 cut(s)	59, 695
Fsp4HI	GCNGC	2 cut(s)	537, 727
FspBI	CTAG	4 cut(s)	275, 593, 702, 730
GluI	GCNGC	2 cut(s)	537, 727
GsuI	CTGGAG	1 cut(s)	476
HapII	CCGG	1 cut(s)	286
Hin1II	CATG	6 cut(s)	80, 170, 295, 343, 436, 643
HincII	GTYRAC	2 cut(s)	205, 310
HindII	GTYRAC	2 cut(s)	205, 310
HinfI	GANTC	2 cut(s)	52, 636
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	3 cut(s)	205, 272, 310
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	6 cut(s)	56, 167, 243, 493, 640, 702
Hpy8I	GTNNAC	3 cut(s)	205, 272, 310
HpyAV	CCTTC	3 cut(s)	7, 82, 497
HpyCH4III	ACNGT	2 cut(s)	440, 499
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	299, 415, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 370
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	6 cut(s)	80, 170, 295, 343, 436, 643
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	264, 354
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	5 cut(s)	99, 298, 299, 343, 506
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	4 cut(s)	275, 593, 702, 730
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	2 cut(s)	36, 459
MalI	GATC	2 cut(s)	266, 356
MboI	GATC	2 cut(s)	264, 354
MboII	GAAGA	6 cut(s)	97, 100, 109, 344, 529, 659
MluCI	AATT	6 cut(s)	31, 159, 510, 626, 657, 674
MnlI	CCTC	9 cut(s)	19, 37, 163, 316, 382, 429, 439, 478, 525
MseI	TTAA	4 cut(s)	227, 282, 345, 660
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	2 cut(s)	149, 370
NdeII	GATC	2 cut(s)	264, 354
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	6 cut(s)	80, 170, 295, 343, 436, 643
NmuCI	GTSAC	1 cut(s)	36
NspI	RCATGY	2 cut(s)	295, 343
PaeI	GCATGC	1 cut(s)	295
PagI	TCATGA	2 cut(s)	166, 639
PfeI	GAWTC	2 cut(s)	52, 636
PflMI	CCANNNNNTGG	1 cut(s)	679
PkrI	GCNGC	2 cut(s)	538, 728
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	41
PshBI	ATTAAT	1 cut(s)	660
PspCI	CACGTG	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	426
RsaI	GTAC	2 cut(s)	303, 338
RsaNI	GTAC	2 cut(s)	302, 337
SaqAI	TTAA	4 cut(s)	227, 282, 345, 660
SatI	GCNGC	2 cut(s)	537, 727
Sau3AI	GATC	2 cut(s)	264, 354
Sau96I	GGNCC	1 cut(s)	426
ScaI	AGTACT	1 cut(s)	303
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	426
SmlI	CTYRAG	2 cut(s)	122, 226
SmoI	CTYRAG	2 cut(s)	122, 226
SphI	GCATGC	1 cut(s)	295
Sse9I	AATT	6 cut(s)	31, 159, 510, 626, 657, 674
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	4 cut(s)	275, 593, 702, 730
TaaI	ACNGT	2 cut(s)	440, 499
TaiI	ACGT	1 cut(s)	43
TasI	AATT	6 cut(s)	31, 159, 510, 626, 657, 674
TatI	WGTACW	2 cut(s)	301, 336
TfiI	GAWTC	2 cut(s)	52, 636
Tru1I	TTAA	4 cut(s)	227, 282, 345, 660
Tru9I	TTAA	4 cut(s)	227, 282, 345, 660
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	2 cut(s)	536, 726
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	3 cut(s)	449, 656, 660
Van91I	CCANNNNNTGG	1 cut(s)	679
Vha464I	CTTAAG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	426
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	1 cut(s)	510
XbaI	TCTAGA	1 cut(s)	701
XceI	RCATGY	2 cut(s)	295, 343
XmiI	GTMKAC	1 cut(s)	271
XspI	CTAG	4 cut(s)	275, 593, 702, 730
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.