Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

24738457 .. 24742961

Gene Structure 4505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG219800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGGGTGAGAAGGGGAAAATGGAGGGGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAATAAGAAGGGTAATGATAGTGGTGTTAAGGATGCCACTTTGCATTTGGTTGATTTGGATTGGGAGATTTTGGTGGTGGATGAGCCGAATGTCAATGTGTTTTGCTTGCCGGGTGGGAAGATTGTGGTCTTCATAGGGTTGCTCAAGAATTTTAGAAATTGGGCATGCCGTAGCTTGACACTATCAAGAGGGCATCACAAAGAGCCTGTTTCTGTTCCATTAGAAGCTCTTCAACCTCTTTGGACCTCCATGAACCGTAAATCTTGGGGTAGAAAGTTACATTCCTCGTCATCAGCTGAAGACCTTCTCCAGGCGGAGGCCTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

136

Amino Acids

15.35

Weight (kDa)

5.72

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	395
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	399
AcvI	CACGTG	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	391, 397
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	3 cut(s)	255, 308, 377
AluI	AGCT	3 cut(s)	255, 308, 377
AoxI	GGCC	1 cut(s)	399
ApoI	RAATTY	1 cut(s)	229
Asp700I	GAANNNNTTC	2 cut(s)	309, 384
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	324
BbrPI	CACGTG	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	202, 387
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	192
Bme1390I	CCNGG	2 cut(s)	192, 392
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	192, 392
BmsI	GCATC	2 cut(s)	103, 283
BpiI	GAAGAC	2 cut(s)	202, 387
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 397
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	3 cut(s)	52, 118, 166
BseLI	CCNNNNNNNGG	2 cut(s)	391, 397
BshFI	GGCC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	391, 397
BsnI	GGCC	1 cut(s)	401
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	1 cut(s)	401
BspQI	GCTCTTC	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	188, 247
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	52, 118, 166
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	190, 390
BstV2I	GAAGAC	2 cut(s)	202, 387
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	52, 118, 166
Cac8I	GCNNGC	2 cut(s)	188, 247
Cfr13I	GGNCC	1 cut(s)	324
CviAII	CATG	2 cut(s)	246, 331
CviJI	RGCY	7 cut(s)	166, 255, 286, 308, 377, 401, 407
CviKI_1	RGCY	7 cut(s)	166, 255, 286, 308, 377, 401, 407
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	402
Eco147I	AGGCCT	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	399
Eco72I	CACGTG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	249, 334
FaiI	YATR	4 cut(s)	78, 215, 247, 332
FatI	CATG	2 cut(s)	245, 330
FokI	GGATG	3 cut(s)	59, 125, 173
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	2 cut(s)	249, 334
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	56, 226, 267
HpyAV	CCTTC	3 cut(s)	7, 82, 395
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	249, 334
LguI	GCTCTTC	1 cut(s)	315
LpnPI	CCDG	4 cut(s)	204, 300, 377, 404
LweI	GCATC	2 cut(s)	103, 283
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	2 cut(s)	36, 357
MboII	GAAGA	4 cut(s)	202, 211, 302, 392
MluCI	AATT	3 cut(s)	31, 229, 238
MnlI	CCTC	7 cut(s)	19, 37, 263, 327, 337, 376, 391
MroXI	GAANNNNTTC	2 cut(s)	309, 384
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	192, 392
MvaI	CCWGG	1 cut(s)	392
NciI	CCSGG	1 cut(s)	192
NlaIII	CATG	2 cut(s)	249, 334
NmuCI	GTSAC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	401
PciSI	GCTCTTC	1 cut(s)	315
PdmI	GAANNNNTTC	2 cut(s)	309, 384
PfeI	GAWTC	1 cut(s)	52
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	390
PspCI	CACGTG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	192, 392
SetI	ASST	7 cut(s)	43, 257, 310, 319, 329, 379, 387
SfaNI	GCATC	2 cut(s)	103, 283
SinI	GGWCC	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	3 cut(s)	31, 229, 238
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	190, 390
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	43
TasI	AATT	3 cut(s)	31, 229, 238
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	202, 347
VpaK11BI	GGWCC	1 cut(s)	324
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmnI	GAANNNNTTC	2 cut(s)	309, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.