Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Reverse (-)

37079366 .. 37082350

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATCCTAATTCAAGGTGGTTTCTCTGCGGTGGTGGTGGAGGGGTACACCAAGATGATCTCTAGGCCCAAGCTAATCAAGGCAAATTTCGATGAGTTGAAAGCCGAGTTTAAGGGGAAGATTTGGCATCCTATACACCTGGAAAGTGTGAGGGTTAGGGCGATTGCCAAGGATATTATTGATGCGTTGAAGAGAGGGTTGAGGCATGATCGGGAGTGGATCGACATGGGGGATGCATCGGAGGAGGTCGGCGGAATTCGAAGGCCGGGGAGTAAGGCTGTGCGGTCATTGATGGAGGGTGAGAAGGGGAAAATGGAGGGGAATTGGTCATGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAGGAAGGGTAAGGATAGTGGTGTTAAGGATGCCACTTCGCATTTGGTTGATTTGGATTGGGAGATTTTGGTGGTAGATGAGCCGAAAGTCAATGTGTTTTGCTTGCGGGTGGGAAGATTTGTGGTCTTCATAGGGTTGCTCAAGCATTTTAGAAGTGATATATGCCGATATAGCTATGATAATTGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

188

Amino Acids

21.58

Weight (kDa)

7.74

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	29, 252, 283, 481
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	85, 255
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	14, 100, 190
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	73, 549
AluI	AGCT	2 cut(s)	73, 549
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	65, 263
ApoI	RAATTY	2 cut(s)	85, 255
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	311
AsuII	TTCGAA	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	493
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	267
BfaI	CTAG	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	140, 267
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	140, 267
BmsI	GCATC	5 cut(s)	136, 172, 223, 245, 394
BpiI	GAAGAC	1 cut(s)	493
Bpu14I	TTCGAA	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	168, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	168, 266
BseGI	GGATG	4 cut(s)	127, 238, 343, 409
BseRI	GAGGAG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	67, 265
BsiSI	CCGG	1 cut(s)	266
BsnI	GGCC	2 cut(s)	67, 265
Bsp119I	TTCGAA	1 cut(s)	259
Bsp143I	GATC	4 cut(s)	3, 57, 208, 219
BspACI	CCGC	4 cut(s)	29, 252, 283, 481
BspANI	GGCC	2 cut(s)	67, 265
BspHI	TCATGA	1 cut(s)	563
BspPI	GGATC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	168, 266
BssMI	GATC	4 cut(s)	3, 57, 208, 219
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	479
BstF5I	GGATG	4 cut(s)	127, 238, 343, 409
BstKTI	GATC	4 cut(s)	6, 60, 211, 222
BstMBI	GATC	4 cut(s)	3, 57, 208, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	546
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	138, 265
BstV2I	GAAGAC	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	67, 265
BtsCI	GGATG	4 cut(s)	127, 238, 343, 409
Cac8I	GCNNGC	1 cut(s)	479
CciI	TCATGA	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	4 cut(s)	206, 226, 330, 564
CviJI	RGCY	7 cut(s)	67, 73, 104, 265, 278, 457, 549
CviKI_1	RGCY	7 cut(s)	67, 73, 104, 265, 278, 457, 549
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	4 cut(s)	5, 59, 210, 221
DpnII	GATC	4 cut(s)	3, 57, 208, 219
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	4 cut(s)	209, 229, 333, 567
FatI	CATG	4 cut(s)	205, 225, 329, 563
FauI	CCCGC	1 cut(s)	474
FokI	GGATG	4 cut(s)	114, 245, 350, 416
FspBI	CTAG	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	67, 265
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	4 cut(s)	209, 229, 333, 567
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	3 cut(s)	212, 347, 564
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	3 cut(s)	255, 298, 373
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	546
Hsp92II	CATG	4 cut(s)	209, 229, 333, 567
Kzo9I	GATC	4 cut(s)	3, 57, 208, 219
LpnPI	CCDG	3 cut(s)	125, 152, 279
LweI	GCATC	5 cut(s)	136, 172, 223, 245, 394
MaeI	CTAG	1 cut(s)	63
MalI	GATC	4 cut(s)	5, 59, 210, 221
MboI	GATC	4 cut(s)	3, 57, 208, 219
MboII	GAAGA	4 cut(s)	130, 202, 493, 501
MluCI	AATT	5 cut(s)	9, 85, 255, 322, 556
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	2 cut(s)	111, 399
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	140, 267
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	546
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	4 cut(s)	3, 57, 208, 219
NlaIII	CATG	4 cut(s)	209, 229, 333, 567
NmeAIII	GCCGAG	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	259
PagI	TCATGA	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	111, 399
Sau3AI	GATC	4 cut(s)	3, 57, 208, 219
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	2 cut(s)	140, 267
SetI	ASST	5 cut(s)	19, 75, 141, 249, 551
SfaNI	GCATC	5 cut(s)	136, 172, 223, 245, 394
SfuI	TTCGAA	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	5 cut(s)	9, 85, 255, 322, 556
SsiI	CCGC	4 cut(s)	29, 252, 283, 481
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	138, 265
StyI	CCWWGG	1 cut(s)	168
TaqI	TCGA	3 cut(s)	90, 222, 259
TasI	AATT	5 cut(s)	9, 85, 255, 322, 556
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	2 cut(s)	111, 399
Tru9I	TTAA	2 cut(s)	111, 399
TspDTI	ATGAA	1 cut(s)	493
XapI	RAATTY	2 cut(s)	85, 255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XspI	CTAG	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.